FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_069.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_069.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCAAATTACTTCTTTTAAATTTTAATGAAAACATAAATGTTAAGAAAA11.5873015873015872No Hit
GTTTGTAGAAGAGTGGAGACTAGATTCCAAACAAACAAAAGAGGGGAGCC11.5873015873015872No Hit
AGGTGCCTCCGACNTATNTATGGGGAGTAGGTAGGGGCGGGGGGAGGGGG11.5873015873015872No Hit
ATATAGAGTTTTGGGTTATTTTTCGGTTTTTTTTGTGGGCTAACGGGGGT11.5873015873015872No Hit
CTATTGAAGGACGTATGGTTTCATTCTTAGTATTTCAGATCTTTCACCAA11.5873015873015872No Hit
GTCGCTAAGGAGCTGTTTCGAACAAAGTCGCCGCTGCGGACGCAATCCGA11.5873015873015872No Hit
TACCGGAACTTAACAAAAGTAATTAGTAAGCTAGTGTTAGAGAGGTCTCA11.5873015873015872No Hit
CCGGTACATTTGGAAAGCTTCCGAGTTTGGATATAGTCGGTTTAGCAACT11.5873015873015872No Hit
GCAATATACCGTCGCAGTGAAAGAGTTGAGATACATCGACTTCATCGCCC11.5873015873015872No Hit
GTCTAAGGAAANTTGTATACAAACATGAAACACTACTTAGGATTACAGTA11.5873015873015872No Hit
ATGCGGAGCGTGGGTCTGGCTTGGGACAGAATCCGCGACAGGCGTATCGG11.5873015873015872No Hit
ATCCCTAATGTGGTAGATCATACCCTCCAAGAGTCTAGTAAAGGACTCGT11.5873015873015872No Hit
GACCAAATGACTCGGACACCAGACCGCTCGTGCCCGCCCATTCTGTCTCG11.5873015873015872No Hit
GATGTAGATATAAGGATTCTGAATTAGTGGACAGTTTGGCTGTGTTTCTG11.5873015873015872No Hit
ATTCTTATGCGACTGCGGTTCCTTCAGTCCGGGGGCCCCTCGGCGTTCCA11.5873015873015872No Hit
ACCATATCATCATCTTAACTGGAAAATAAAATACAAAATAAAGACCGTGT11.5873015873015872No Hit
AATAAGAATCTAACCCTACCTATATTGAAGCGTAAGAGCGATTCTTATTC11.5873015873015872No Hit
GATTANAGTGCCCCCCGCCGGTTGCGGATCCAAGGCGGAGGTGCTGGTGG11.5873015873015872No Hit
AAACATTATCTAATATTACAGGTTATATTTCCTATTGTCTTTATCTATCG11.5873015873015872No Hit
TTCATATCGTGTTTCACATCAGTCAAGGGAGTGGGTGTCGCAATAGGTGT11.5873015873015872No Hit
TCTCCATTGGCACTAATGAAAAAGGTTGAGACTTTAAGCCAAGCAGAAAA11.5873015873015872No Hit
GTTCACAAACGGTGAAGACATTAAGGTAAAACGTCTGCGATCCAATTAAG11.5873015873015872No Hit
ATTTTCTGAAGTATAAAAATAAACATATAACGATTTAATCATAGCAAAAA11.5873015873015872No Hit
TCTTTGGATTTCTCGGAGACCTTTGATTCAGCTATCTCAGCTTCTCCAAG11.5873015873015872No Hit
GTGTTTTGGAGTCGAATATGACTTGATGTCATGTGTATGATTGAGTATAA11.5873015873015872No Hit
TACTTTATACGGCGTGTATATGCGTTTGGTTTCGTAATCACTTATTTGGA11.5873015873015872No Hit
TGTCACAGTAGGGCGAGCTGTTTGCGGGTGACGGCGGGCGTTTGGTCGGG11.5873015873015872No Hit
GTTTTATGGCGCTTATTGTTGTGTGCGTATCATCGCCACAGCCACTCCTC11.5873015873015872No Hit
ACTGCAGGTCCCCCGCCAGGCCGGGGCCAGCCCTGCGGGCCCCGGCCCGC11.5873015873015872No Hit
AGTTGGTGGGGGGGGGGTGGGGGGTGGGTCCGGGGGGGGGGGGGGCCCTG11.5873015873015872No Hit
ACATTGCCTAATCCTTTTTCTCTTCGAAATGTATGTGTATACTTAATAGG11.5873015873015872No Hit
AGATAATAACAGTTAAATTTCAACAACTCCTGGATCAAAACCAAAAAGAC11.5873015873015872No Hit
ATCCAATTCCCTGCAAATGAGATAACCACTCATGCGCTTACTACTGCTCG11.5873015873015872No Hit
GAGGTATACTGAGTAGTAAACAAGAATATCGATAAAAAAAAATGATTTGA11.5873015873015872No Hit
CAGTGATACAAGTGAAATTCGAATAAACAACACAAAACAAACTTAAGAAG11.5873015873015872No Hit
TAAGAAGGTTGGTTAGTGTTTTAAAGTCGAATATGACTTGATGTCATGTG11.5873015873015872No Hit
AATACTTCCTATTGGAAGCAAAAATTGTATAACAAGAAAACTATCAGACC11.5873015873015872No Hit
ATCTACACTCGGTTAATAATCTAATCAATGTCAATTTGTGAAGTTGTAGA11.5873015873015872No Hit
AGTGAGTGGGTATGGGCTTTTTGTGTAAGTGTTTTAGTGTGGGGATGGGT11.5873015873015872No Hit
TCGTGACCCAGCGGGGTCGTCGCGCCCCCTACCGTGGGGCCCGCGGAGGC11.5873015873015872No Hit
TCCTAGAAGGGTGCAGCATTCTACTGTGTTAATGTGGAGAAGGGATGCCT11.5873015873015872No Hit
CAAGAAAAAACCATCGCCATTTCATCTGAATCTCGATGAATAAAAATTAT11.5873015873015872No Hit
CTCTAGTCCTTGGTGTGGTGGACGAAGGTGTGGTAGAGACCTAAGGGGCG11.5873015873015872No Hit
ATCGTGGGTCCGGTCCGCCGTCGCTACTCTAGTCTCGTCTCCTCCCTGCG11.5873015873015872No Hit
CTAGCGAACGTACTCCCCAGGCGGGATACTTAAAGAGTTAGCTAAAGCAC11.5873015873015872No Hit
CCTTTTATTTTAGGTACTGAATTATATGATGCCGAGAGTTAGTTGGTCAC11.5873015873015872No Hit
CAATGTATGCTCTGTCACACCTTCTTAGAGCCCCACAATTGCGATAGTAT11.5873015873015872No Hit
TCGGATAAGATTTCGGTCTACGTATCGGACGATGGAGGATCTTCGTTGAC11.5873015873015872No Hit
GTAATTTATAGTCTGGCGACAAATCTGTAGCAGTAAATAACAGTAACTTG11.5873015873015872No Hit
CTATAAGACATATCCTGTCGTCAGGCCGGGTGGTTGGTATCGCGGGCCCA11.5873015873015872No Hit
CATACTATCCATCCGCTCATAGCATAGTATTCTTCATCAAGGAATTAGTG11.5873015873015872No Hit
GGCTTCCATTCTGCTGGGGGCCCTGTGGCGTTCGTAGCGCTCGGTTCCCC11.5873015873015872No Hit
AAAACAGCAAAATCAAAAAACAACCTTATCATCAGTCACNACCATCGGCA11.5873015873015872No Hit
GTATAAAAGGGGTCCCTAGGAACTGAGAAAACAAGAAATCACTGTCTTAA11.5873015873015872No Hit
ATCCTGGACGATAACCGCAACAGTCCACACTTAGGATAGTCAATTTACTT11.5873015873015872No Hit
GAATTAGGGTTCGATTCCGGAGAGGGCGCCTGATAAACGTCTACCAAATC11.5873015873015872No Hit
ATATTATAGTCTCGTCGGGTAAGTACAACTCAGCATGGTTCTGTACCGAA11.5873015873015872No Hit
GTTAAGGGGTATGGTGGTGCCTGGGGTTGGGGAGGGGGTTTTGGTCATGG11.5873015873015872No Hit
GGTCTGGCCGGTGTCGGTGGGGGGGGCTTGGGCGGTGAGTGGGGGGCGGC11.5873015873015872No Hit
AGTCCAGGTGGGTAGGTGGCGCAGGGGTGGCTGGGGAGTGGGGGCGGGGG11.5873015873015872No Hit
GGCAATTTTCGCATTGTTTGGAAACTTTTACGAAATACAAGATCTTCCTT11.5873015873015872No Hit
GATGAATATTCAATCAATGAAAATATTGTACAATGCAAAATTTTTTTGTG11.5873015873015872No Hit
CTTAGTCAGTGAGGTGAGGATCTTTTCAATGATCTCTGTGCACTTAGCAT11.5873015873015872No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)