FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_067.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_067.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC21.1627906976744187No Hit
TGCCCTTTGTGAACTATAATGTCAGAGAATTCATAACCCTCTTCTTTGGC21.1627906976744187No Hit
CACTTATAGCTATTTTGTCCCAAAAGAAAATAAAACCAACTCAAAATTGC21.1627906976744187No Hit
TTGCTGCCCAAACCGCAGCAGGAAATGCTATTCGAGCAGTAGTGGATCAA21.1627906976744187No Hit
TTTCTAGATTTTCTTTTTACCCTTCAATCACTTATCTCTATCTATCTACC21.1627906976744187No Hit
TATCTCTACTATTTCCATGTCATCAGCGAATGATACTCCGGTTTGGGCAA21.1627906976744187No Hit
GTATTTTATAGAAGAAAAGATAATCCAATAAGTAAGTAATAATAACTCAT21.1627906976744187No Hit
ACAAAGCATGGAGAATTTGTTTGTAAANATTTCAAAAAATTGGTTGTGTT21.1627906976744187No Hit
CCATTTATTATCATTTCTTCACAAAATGTCTTGAAGCCAACAATCCACAT21.1627906976744187No Hit
ATTCCATATTCCTGGCAGAGGCGAAGACAGTGTTCCACCCTGTAGCTGTC21.1627906976744187No Hit
ACCTGATCTTANAAGTCTAAGTAGTGTTTCCTTGTTAGAAGATACAAAGC21.1627906976744187No Hit
GGCTAAATCAGTTCCTAGTCGTCGCCTCGACTTATCATCTCTACCTAAAG21.1627906976744187No Hit
TCACCACTCCCACCACGACCAGTGCAGCGGCCGAAATCAGTGTCTAGAAC21.1627906976744187No Hit
GCTACGGAGACTTCTTTTGCTGGTGTTTTAAAGTCATGTGGTTTAATCTT21.1627906976744187No Hit
TTCAGGCACTGAGCACACTGAAGAGTAATAGAGATTAACAATGCAAACAT10.5813953488372093No Hit
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACATTAACCAACC10.5813953488372093No Hit
TACAAAATGAGCACCTAGGAAAAAAAGACCATATGCAGATAACGAAGAAC10.5813953488372093No Hit
GATGTATCTTAAGACCCATTTCACAGCCTGCCAATGACTCCTCAATGGCT10.5813953488372093No Hit
AAATAGGGATTAAGTGGAACGGAATTGACTGGGTGGTAGAGTTGTATAAA10.5813953488372093No Hit
TCTATAGCAGTTATCTCTATTTTACTAAGTTATTCAGTAATTCCCTTTAG10.5813953488372093No Hit
GTTCTTGTTTTCAAGTACAACAACGATGATCAAACCCAATCCAAGACGAA10.5813953488372093No Hit
TGACTGAACAATAACAATACAATATACTGCAGTGTGCTACAGCAAACCCG10.5813953488372093No Hit
GCTCCAAAGTATGGGAAGAATGGCTGCAAAGTCACTCGACCTGGGGGCTG10.5813953488372093No Hit
CTCTCAATCTTCGACAACCACAGAACCTCTACCAGCTACTCCACAGAATG10.5813953488372093No Hit
GTTTACAGTCCATTAACGTTTTCCATCAAAACTCATTCTCATTGTCTTTT10.5813953488372093No Hit
ATCCAGGATGGCCCAGCTGCGCCAAGGAAAAGAATATAAGAAGGATCTGA10.5813953488372093No Hit
TTTAGATGCAAACCATGCTTGGAGGCTTGGTTCGTATCTTATGTCTTCCT10.5813953488372093No Hit
GCTAAAGGGCCCATTGGTTTTGACTGTTAATTTTGGCTTCAACTGTAAAA10.5813953488372093No Hit
GTAATAACGGAATACCAAGATTTGTGGTTAAGCTTAAGAAATATTGACTT10.5813953488372093No Hit
GCTCTTATGTTTTCTAGATCACACTTGTTCCCCACCAGCATTCTCGCCAC10.5813953488372093No Hit
AAGAAAAGCAGTGTGCTGGACAGCACCTTTCCTACGTTTGAAAACGAATT10.5813953488372093No Hit
ATGTATATATGCGTAATCATCACAACTTTCATATACTAATTAAAATTGAT10.5813953488372093No Hit
GGTTGGTTAGTGTTTTGGAGTCGAATATGACTTCATCTCATGTGTATGCT10.5813953488372093No Hit
CATTTTCTATTNGACGATGAGGATGTGCAACAGAATCATCAGCTAAGAGT10.5813953488372093No Hit
AGAGCGTAGAATAATAAAATAAAAAATAAAGAGTAGTAATTTTATTATCC10.5813953488372093No Hit
GGGTAAAACAGGCAAACAGTTCTAAAAATTTACATTGGAAATATAAAACT10.5813953488372093No Hit
GTTGTGGCGTGTTTTACCTGCTTATTGTATGTTCTTGTGTTTAGAACATT10.5813953488372093No Hit
GGGAAAACGTCAACGACTGCTGGCTTATTTGTCAAAAAAAAATAGAGTAC10.5813953488372093No Hit
ATATCATACTTTCCTTCACGAAAATTTTCTGATGTAAAGGAGCTGAAAAG10.5813953488372093No Hit
GTTCTCCTCTTTTATATTTACACTCTCAGAAGGGTTTTGGATATAAAAAA10.5813953488372093No Hit
CTTTTTAGAACTGCTGAAAGTTCCTCGAGTGGAGACTAAGCTAAGGGTTT10.5813953488372093No Hit
GGGGGGGCGGGGGGCGGGGCGGTGGGGGGGGGGGGGGGGGGGGGGCCGGG10.5813953488372093No Hit
ATAAAAAGGATTTGCTTGTGAGCTTTCTCGTTTCCAGTCANGGAAACACG10.5813953488372093No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.5813953488372093No Hit
ACACAAAGCCAAAGACTCATATGAACTTTGGCTACACCATGAAAGCTTTG10.5813953488372093No Hit
GATCATTACTTGTCTATATATCTAGACAATGTAAGGTGAGTACATGTGGC10.5813953488372093No Hit
GTTAGTATTGGACGTGAATTGAGAAACAGTTATATAAGCCTATAACACAT10.5813953488372093No Hit
CTTCCTCCACATTCTCACCTCCCATATCATCCGGAATAGAGTATGTAACA10.5813953488372093No Hit
ATCCAGGGGTCGCGGACCGACCATAGACCCCTGGTCAATAAGTGGAAGGC10.5813953488372093No Hit
GAGTATAAGAACTTAAACCGCAACCCGATCTTGTAAGTCTAAGTAGTGTT10.5813953488372093No Hit
TAGTATAATTTAGTTATTATGAATCAAGATTTTATTTTATTTTATAAAGT10.5813953488372093No Hit
GGTTTTAGTAGGTATATGGATTTTATGATGAGTGTCTGCGTAAATATGGC10.5813953488372093No Hit
GTATTGAACAATGATCTTCTGCCTTCAGCGATTAAAAAGTTGGATTCTAA10.5813953488372093No Hit
GGCCTACTAAAGGCACAAAAATAGAGGGTAAGTTATTGAAAGTTGTCATA10.5813953488372093No Hit
GGGTTTGGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGCCCGTG10.5813953488372093No Hit
AGATAGTGTGTTTGGTATGAGCTTATTATTAAAAGTCAAAATAATTGTGC10.5813953488372093No Hit
ACCATGAAAGCTTTAAGAAGCAAGAAGAAGGTTGGTTAGTGTATTGGAGT10.5813953488372093No Hit
GAACTTAAACCGCATCCCGATCTTATAAGCCTAAGTAGTGTTTCCTTGAT10.5813953488372093No Hit
ATATATACGATTGCATTGCATATACTAACGGATGCGATCATACCAGCACT10.5813953488372093No Hit
CATGAAACCTTTCCCTGTCAATTTGAACTTGAATCTGAGTTATAATTATC10.5813953488372093No Hit
GAGAATATTGTTTCTAGTGGATTCTAAAACTCCTCATTTTCAACCACTGA10.5813953488372093No Hit
GGACGACGAAATGGANTTTGAAACTTATTAACATTTTCCAAAAAGGGTAC10.5813953488372093No Hit
GTCGGGTGTAGAAGACCGGATGGGCCGCTGAGGCCGGCATAATGGCTCGG10.5813953488372093No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGG10.5813953488372093No Hit
ATCAAACCTTAAATTCCACTGCCTTGGAGACTGTTTAAGACCATATAAGG10.5813953488372093No Hit
GAATTGGGATACTTTTGGTGGGGGTTGGGGTTGTGGGGGTGGCGGGCGGG10.5813953488372093No Hit
GTGTTGTCTAAACACTTCTAATCCATCTCTAACTCTATATTTAGTCAAAT10.5813953488372093No Hit
GTTTATACATTTCTCTTAGTATCCACTTTAGGGATAATTTTTTTCGCTAT10.5813953488372093No Hit
ATATTCGACTCCAAAACACTAACCAACCTTCTTCATGCTTCTCATAGCTT10.5813953488372093No Hit
GAGTAATGGTGAGGAAGAAGAAGGTGAAGGGTATAATGGTCAAAACGGCT10.5813953488372093No Hit
GGTGAAAAGGGACCTAACAATATTATTCATCGTCAAATTTATGCTTGTTT10.5813953488372093No Hit
GTATGGGAGCTTCCACACAATCTACTCTTACCTGTCGGAAAGTGTCTATG10.5813953488372093No Hit
TCCATATTCTGCTGAATGGGATTCGACAATGAGTTTGAGTCAATGATTGC10.5813953488372093No Hit
GTTCTCTTCAACAGCCTCCTCTGTAATCCTGCAACCAATATTTCCAACCT10.5813953488372093No Hit
GGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGCCCGTG10.5813953488372093No Hit
GGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGG10.5813953488372093No Hit
TGGTCGATGAAAATCTATCGGGTTCGAGGAATGGTCGACCAGGGGTTGAA10.5813953488372093No Hit
ATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCAATGCCTCTAA10.5813953488372093No Hit
GTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACCGCAGC10.5813953488372093No Hit
ATTCTTCTTTATAACAGTGTTTCTTTCTGAGATTCCTTTATTTTCCACCT10.5813953488372093No Hit
GCATACTTCATCTACTACATCACTTTAAAAATCTGAGTCAGACACGCTGT10.5813953488372093No Hit
ATCTGTAACTTACAATTTGTGAAAAAAGCGGGTTGTGTAATACCACCCCT10.5813953488372093No Hit
CCATTCTTCCGGGCGCGCGCGGGTATCGGCTCCGCGCAGGGCGCACTCAC10.5813953488372093No Hit
AGATAAACCGAGTCATCGAAAGCAAGATTAGGGACAAAAGCAGCTTCTTA10.5813953488372093No Hit
CTAATTAGTAATTACACTAATCTTATCATCTTTAAAATGTTATGAGGAAA10.5813953488372093No Hit
GCATATAAATACTTAAATTATTTCTTGAACATTTTATTCTTACTGTGTAG10.5813953488372093No Hit
ATCATCTCTTTCCAGTTTAACTCACGGGTACAATACAAAACAAAACCCTT10.5813953488372093No Hit
GATGTAAGATTATTGTGTTCTTTATGGATATAAGCTTTCAATGATGTTGT10.5813953488372093No Hit
CACTTATACCCATTTTCTCCCAAAAGAAGTTATAACCAACAAAATATTGC10.5813953488372093No Hit
ATATAGTGTGAACTTGGCTTTATTGAATTCTTTTTAAAAAAATTTCTCCA10.5813953488372093No Hit
AGGGCTAAAACCACAACCAGGGCTATGAACCTAAATTTATCTTTCCTTGT10.5813953488372093No Hit
TTACAACACAGGGGGACTAGATTCACTGTTTGCTCATGCTCAATGCATTT10.5813953488372093No Hit
AAATCTTCTTCCAGGTGTTCGACAAGGGCTGGATGGAAGACGGCGAGGGC10.5813953488372093No Hit
GGGATGAAGCGCCGCGGCACGCCCGACGGGCCGTTGATCAGGCTCTTGGC10.5813953488372093No Hit
AAAATNAGGAGACACTGTTTAAGAGATTCACTCAAACAAGCAAAGCCCTA10.5813953488372093No Hit
TAATATTGGAGTATGAGGAAAAGAAATATATTCTCTGTTAGGTGTGTGGA10.5813953488372093No Hit
CTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCAAATATGAC10.5813953488372093No Hit
GTTGTGATAACAGAGCATGAGGAAGAGTATGTGATTGAGTTAGCGAATGA10.5813953488372093No Hit
AAGTTAGATTATGCTCTCTTATTTAGGTGGAGGATTTAACATCGCCCCAC10.5813953488372093No Hit
CTGTTGTCGGAAACATACAGTTAGAGAATTGAATTGTTATGAAATCAACA10.5813953488372093No Hit
TGACAAAATTGGGGGAAGGATTCTTCTGCCGAGCTGTGCTTCAAGATACG10.5813953488372093No Hit
GCGTTAGTCTCTTTTCAATGTGCATGTGAGATTCCTAACAACCTTACAAC10.5813953488372093No Hit
TTCTCATTCTCCGTCCACTCAGAACCGTAATAATATTCCTCCTGTGATCT10.5813953488372093No Hit
ATAGAAAACACACCACTATCAATGCGCAACCCAAAACCCTATCAGACCAG10.5813953488372093No Hit
ACACTACTTAGGCTTATAACATCGGGTTGCGGTTTAAGTTCTTATACTCA10.5813953488372093No Hit
GGTGCCCGACGCCCTGGTCGCGGAGGTGGTGTCACTCGACTCCGTTCCCG10.5813953488372093No Hit
ATAATAAAGTAAAAATAGTAGTTATTTGAGAAAAAAAATTAGTGATGATG10.5813953488372093No Hit
GAATTTCTAATTACTTTGGAGAAGCTGGTCGCTGCTGGTCAAAGCAGCGG10.5813953488372093No Hit
ACAAAAATCCTGAGTCTAAAACAGAAACAAAACAAATTCCTACTTGTTAT10.5813953488372093No Hit
TATGAGTCTTTAGCTTTGTATCTTCTAACAAGAAAACACTACTTAGGCTT10.5813953488372093No Hit
ACGCGAGGCCGTCGGCGGACCGTGGTGTTTAATGCTCAGGTTCGTCACCT10.5813953488372093No Hit
GATATGCGGTCCAATGAATATAAAACACCAAAAGGAGAACATGAATAAGG10.5813953488372093No Hit
CTGCATGGCATAGGGCCCTTTAAAGATCTCCTCGAAAGAGTGCTCCATTT10.5813953488372093No Hit
GCCATTAATCATGTCCTATTTGAGTTAGGCCTTCTCTGTTTGTGAACTTA10.5813953488372093No Hit
GTGTCGATAATTATCAAAATTAGGTCATCGAAAAACAGACTCTTACAATA10.5813953488372093No Hit
ATGTATCTCTTCTTCTTCTTCGTCTTCTCTCTCATTCATGTTTGTTTGGT10.5813953488372093No Hit
ACCACGATGGGCTTAAATACTTTTTTTTTTTAGGAGTTTTTTATTAAAGG10.5813953488372093No Hit
TAGTCAAACGAAAACACAACTCGACATATATATGTTATGTCTGAAATTTC10.5813953488372093No Hit
ATTTCTTTTCCGTCGATACGTCCTGCAATTTGTACTTGAATTCCTTTTGT10.5813953488372093No Hit
TTATCTATCTATGGAGTCAAAAACACTCTTGTTTTGTATCTGGTAACTTG10.5813953488372093No Hit
ACGACGCCATTTCCGAGAGAGAGATCTTTTTTAGTTTCAAATTGCGATTT10.5813953488372093No Hit
GAAATAGCGGTTTCAGAAAAGAAATTGAAGCGCAACCTCAGGCCGGTAAA10.5813953488372093No Hit
TTATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGG10.5813953488372093No Hit
TCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGA10.5813953488372093No Hit
CGGTTTAAGTTCTTATGCTCAATGATACACATGACATCAAGTCATATTCG10.5813953488372093No Hit
TACTTAAATTCCTCTAAATTACTCTCATAAGAACAAGATTCAAACTTTAC10.5813953488372093No Hit
ATAGAGTAATGTGTAGATGATTTACCGGCTGTGGAAAACAGCACTCCAGA10.5813953488372093No Hit
GAAGTCACTATTATAACAGCTACTTTGCTATAGCAAGAGATGTATATCAG10.5813953488372093No Hit
CTTTCAAAGACGTATCTCGAGTGTCGGATGGCTAAGTCAGTCCTTATAAG10.5813953488372093No Hit
ACCTGATCTTAAAAGTCTAAGTAGTGTTTCCTTGTTAGAAGATACAAAGC10.5813953488372093No Hit
GTTCTTGTTCTTTCTGGATCCTAAAATTAAAATAGAAGATTGAGGTGAAT10.5813953488372093No Hit
GAAAGGATAGGCTGGTTTCGGGTCTAAAGGAAGCGGGTATCGGTTGTTTG10.5813953488372093No Hit
GCTACTTAAAAAGCGTTTTGTGAAAATTTCTCTACAGGCACAGATGGTTA10.5813953488372093No Hit
CTTTTTGAATANTAATATTTGTCTCTAATTTTCTGGAGCGTGCTTTTATC10.5813953488372093No Hit
GTATGAGTCTTTGGCTTTGTCTCTTCTATCAAGGATACAATTCTTACGCC10.5813953488372093No Hit
TCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTC10.5813953488372093No Hit
AATTATAAGAGTTAGAGATAGATTAGGAGTGTTTAGACAACACTTATACC10.5813953488372093No Hit
CATTTTCACAAAAAAATTGTCCAAGACTAATTATTGTGGACGTTTCCTCA10.5813953488372093No Hit
ATGCATAATGATCCATCTTCTTAAGTGTGGTAGAAAAAAAAGCACCCACA10.5813953488372093No Hit
TACCTACACCCACTCTACCTCCATAATTTTAGCATCTCTTTGAAAAAACT10.5813953488372093No Hit
TTTCTACTCTGCTTTTAATCTCATTGACTAACCTCAGACCATTACTGAGA10.5813953488372093No Hit
AAGCAAACATATATTCTGATATCCATACCACTTCAGTGATCTAATTCGTG10.5813953488372093No Hit
CCTTTGATCTATCTTGATCCCTATGGGTGCTTTGGTCATCAGTAACTGTT10.5813953488372093No Hit
GCTTATATATAGGTTAATTTGTTTATATTCTTTTCAGATATAATCCTATT10.5813953488372093No Hit
CTTAATATATGTATATAAATTATTGTAATATGGAATTATAATTCACTTTT10.5813953488372093No Hit
GGTATTTGAGTGAAATTGGAGAGTTGCAGCTCTTGGGTGATGAGGATGAC10.5813953488372093No Hit
TTTATGTTTCTTTAGGATTGGCCTATTATTGCTCAGCGTGTTCATGACCA10.5813953488372093No Hit
GTTCTTATTTGTTACTGGACTTTGTGTTGAACGTGATTGTTAATCTTATT10.5813953488372093No Hit
GTTTGAACGTCTGCAAAGGGCTGGGTACCCTATCCTTATGCTTACCCAGC10.5813953488372093No Hit
TTTTATACCTGCATATGTTTTAGATTATGAGAAACGACAAAAAGTGTAAA10.5813953488372093No Hit
GCACCCATTTTCCTAAAAGTCGCAAAAGAAACTAAAAACTGGATTCTCAA10.5813953488372093No Hit
AGTGACTCAGGCGGCATCTATTGGGCCTAAAACGCATCTAGGTAAGGTCT10.5813953488372093No Hit
GATTCGACTGCCAGAAAGCTTTGTCCTTCTCTTTGATTTTTCAACTCCAT10.5813953488372093No Hit
TCGGTATCGTATTCGTTAGGCCGGCCGGTTGCCACCGCACAAAAACTGCA10.5813953488372093No Hit
AGATGCTACATAGTTGGTTCTCATCCTTCAGAGACTACGAGTGTAATAGG10.5813953488372093No Hit
ACTTCACGGGCGAGGTCTNTGGTTCAAATCCAGGATGGCCCAGCTGCGCC10.5813953488372093No Hit
CATTCATCAGAGACCAATCCCCATCTTTTCCAACTTTCCAGTGGCAGCAA10.5813953488372093No Hit
CTGTATGTGTCTTCCTTCCCTTGTTTGGCAACTGTGGTATGTATTTCGTG10.5813953488372093No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)