FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_061.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_061.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22
Sequences flagged as poor quality0
Sequence length151
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCCGCCTGCGTGGGAAAGCAAAAGGTTGAGCGCAGCTCACCGGCACA14.545454545454546No Hit
ACGCCTGTCGGTGGTGTCGGGGGGGCCGGCGTCGGGAGGCTGTGGGTGCT14.545454545454546No Hit
TTATTACACCTTTTGATTGAAGTTGAGCCGATTTCGTTGAAGATCACGTA14.545454545454546No Hit
CTCCTTCTCTGACTACGACGACGACGAGTTTTATCAATCGCCGGNGGATT14.545454545454546No Hit
GCCCCATGTATCCTCCTGAGGAGAAGTTGGGTGTCATCCCCCGGGGCGTC14.545454545454546No Hit
GTATATAATGGAGCGGACCCAAAAAAACAAAAGAAAACTGTTGCGGACCG14.545454545454546No Hit
CAGTTGACGAGGCTAAGAAACATTTCGCAGTTCGTGGCAATGATATAGGT14.545454545454546No Hit
GAGCGCTGGTCAGTCACAGCTAATTGAAAACAGAGCAGGGGGATGCAAAC14.545454545454546No Hit
GTACCGGGCGTGAGTGGGGATGCAGAGCCTGTGGGTGGAGGGGACGTGGG14.545454545454546No Hit
AGGTGGGTGTCNTGGGGGGTTCGGGGGCGGGCGGGATGCACGGTGGGTCG14.545454545454546No Hit
ATCTAACACGCTGCTCACGTGGACATAATGAGAGCATGACTCCCGCGAGG14.545454545454546No Hit
CTAAACTGGTTCACATTGACCCTGATTTTGGCTTACCTGCTAATTTCAGG14.545454545454546No Hit
GTCTACCTTGAAAATAACTCGACTATCTTCTTCACAAATCGAACCGGAAA14.545454545454546No Hit
ATGGAGAAGTGTTGGACCGCCAGTTCCGGGGGCACGGGGTCGGGCGGGGG14.545454545454546No Hit
GATCCCTTGCTTTTTCTTTTAAATGAATTTGCCTCTAAATTTCATAAGAA14.545454545454546No Hit
GAGAAGCAGGGGGTCTGCATGGTTTCCTTTCTGCATTATCGTTTCATCGC14.545454545454546No Hit
TACTTTCTGCCGGTACGCCCAATGATGTAAGTGCTTGACTTACAACGACT14.545454545454546No Hit
ACTTAATGTGGTCTAGAGGTGGTTGAGCTGTTGGGCGGGGTGGGGGGTTG14.545454545454546No Hit
GACACATCATCCACGGCAATCAGGAGCTACGACCAATCCGCGTCACCACC14.545454545454546No Hit
CTAGTAATTCTATTAACCCCGTCGGATGGCGTCTATATAATAAGTATCTC14.545454545454546No Hit
GGACTATGTGCTTCTAAAAGATCTTTTTTACTGTGTCCGATTCCAAAGTT14.545454545454546No Hit
GATTAGTAGTGAGTTTTTTATTCTGTTTTTGTCTAACTCTTCATGTTTAT14.545454545454546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)