FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_055.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_055.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATTGTATCCCTGTTAAAAGACACAAAGCCAAAGACTCATATGGACTTT21.7699115044247788No Hit
CGAGAGATAGCGAGGAATTGACGAATCCTCTAGAGAAATCAAATGGTCTA10.8849557522123894No Hit
GTATTGATATCATTGGGATGGAAACTTCTTCCTTTTACTCGACCACGACC10.8849557522123894No Hit
GTGTTGTATGTAGCAGAGCCACTCGATGCTTGTTCGGATTTGGTGAATAC10.8849557522123894No Hit
AATTTAAAGTGTTAAACGGCCCAATTTGTATTACACGGCCCAAGTTAAAG10.8849557522123894No Hit
AAGACTCAACTTTGCCAAACCTGCTTAACACCACTCCTTTGAGAATTACT10.8849557522123894No Hit
CTTAATGACAGTATACAGGTTGCTGCTATGAGAATGTATCAATTTAGATA10.8849557522123894No Hit
ATTTACGTAGAAACAGTGTTCCTCTTGATCGAGCCATTGCTAAAGACACT10.8849557522123894No Hit
TGACATCAAGTCATATTCGACTCCAAAAAACTAACCAACCTTCTTCTTGC10.8849557522123894No Hit
GGTTTAGATTGTGTGTGCATTGTTGATATCTATTGACGCCCCCCAGTTCG10.8849557522123894No Hit
TGTCTAAACAGNCCCAGTTCTTTGGTTTTTTATTTTCATCTTCTCATATG10.8849557522123894No Hit
ATATAACATAAGTTTATTGTTTAATATCTCCATTGGCAACAAAGACTAAA10.8849557522123894No Hit
GACAAGCTTTGGTTCTTCAATATTTTCACCCAAGGTTGCTGATTTTGTTG10.8849557522123894No Hit
GTGTAATGATAATAATAAATGAATTTGATCATTTATTTTCCATAAATTTA10.8849557522123894No Hit
GATACATGCGATGATGACAACATAATCTGGAGTTGAGGACAAGAGAAACA10.8849557522123894No Hit
CAACTTATCCCTGCAGCATATTTGAGGATCGGCACCCATCTACTGTGGCT10.8849557522123894No Hit
ATTCAGCACCAGTTCCATCTCAGACTGCTGTTTTATTGATATATCCACTT10.8849557522123894No Hit
AGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAAGGAAG10.8849557522123894No Hit
CAATACATCCTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTATCAGA10.8849557522123894No Hit
CCTGTCTCCTTCAAGTTTACCTACTACTGTACCCGCGTGAATATGATCTC10.8849557522123894No Hit
ACTTGATATAGAGCTAGCTTCAAGTTCACTAGAAGCTGTGAAAATGGAGC10.8849557522123894No Hit
ATTGTAAATAAGTTCCAACTCCAGGATTTATTTCACAAAATGACTGCAAA10.8849557522123894No Hit
GAGTCCACTTCTCTTGCGACTTCCTGTGCGACTTTGGTAGCGACCTCCAA10.8849557522123894No Hit
TTATTAGAATGTGGTTTGGAATGAAGAGATCAATAAACCTTATATATTAG10.8849557522123894No Hit
TAAAAACTAAATAATTATAACATAAAAATAATATATCTTAAAGAGATCAA10.8849557522123894No Hit
ATATTGGTGATGGGTATATAACGCAGCTTGAGTCGTAAAATCGTGCGCTA10.8849557522123894No Hit
GCTTTAGACAACACATTTTGTCTATACAAATGCATAGCCTATGATCATAA10.8849557522123894No Hit
TAGTACACATATCCAATTAGATTCGATGTCAGAATGATGTAGTGATTAGA10.8849557522123894No Hit
AAACAATATATTCTATAATCTATTTATTTCCTATAACAGAAAGAAAAGAA10.8849557522123894No Hit
GAAAAAATTAGTATCAAACAGAAAATAGAATAAAACATAGTTTACAAGAT10.8849557522123894No Hit
GATCGTGGTCTGCAGCACNCGCCTAACGGCGTGCCTCGGCATCAGCGTGC10.8849557522123894No Hit
ATATCGGGTAATCCTTCGGGTGGATGCTGTGGATCTCTTTAACTGAGCAT10.8849557522123894No Hit
ATATAATACTATACACTTGAAAAATCACCATGAAAAAAAAATACACGGCC10.8849557522123894No Hit
GTAGTGACTGGTGCGGGAGTGACGGTCCAGGGTGGGCGGTGGCGCGGTTG10.8849557522123894No Hit
ATCGATGACTGCATCAAACATCCACTTGATAGTAGATCTGAAAATTAATA10.8849557522123894No Hit
ATCTCCCTTCATACGTATTTAATACATTACATATATCTTGGAGTTGGATA10.8849557522123894No Hit
GTGGAAATCTAGGCTCAACGCTCTTAAAGACACCAACAAGCTGGTAAAAT10.8849557522123894No Hit
CAAAAAAGGTCAGTTGAGTTTATTATGGTGTACAGTTCAGAAAATTAAAT10.8849557522123894No Hit
CCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTCATTTGATGG10.8849557522123894No Hit
GAGTTATTGAATCGATGACTCAAGTTAGAGAAATGTATTCACCTCGATGC10.8849557522123894No Hit
GTAATAATTATATAAGAAGATGCTCTTTATTCATGCCGTGTTAGATTATA10.8849557522123894No Hit
ATAATATACATCTTATAAACTCGAAACAACAACTTAAATTTATCGTAGTA10.8849557522123894No Hit
TTCGCTTTCCTTGTGGTTTTGTTCTTCTTTTTCTCCTTGATCTTCCTTGT10.8849557522123894No Hit
GTTTATACACATTATCTTATAGGCAAAGATGTGTTTGTTTTGTTTCTTGT10.8849557522123894No Hit
CAACACATGATTGAACTTTCTAAAGGATGCGTACAAGTAAAGTGCAGGTA10.8849557522123894No Hit
GTAGATATTTTGTGATTGATTTTTGTTCCTATATCACTTATCTAGATATT10.8849557522123894No Hit
TAACAATCTCGAGCACACAATCTACTTTTGTTATAAATTGCCGCATCTAT10.8849557522123894No Hit
CTCATACGGATTACGGCTACACTATCATAGGTTTGAGAAGCCAGAAGAAG10.8849557522123894No Hit
GCCAAAGTCCGTATGAGTCTTTGGCTTTGTATGTTCTAACAAGGAAACAC10.8849557522123894No Hit
GCGTTATATTATCAATTTTTTCAAAATTCTGAACTTTAGTATTAATATAT10.8849557522123894No Hit
CAATCAAACAGTATAAAATAATAATCTAATATTTAAATTATAAAAACATT10.8849557522123894No Hit
ATATAACCTAGCTTCCACATAAAAAGAACAAAACTTGCAATTACCTGCAC10.8849557522123894No Hit
TTAGATACCTCTGGCGAACGGTGGTAGCTCTATCGGCTGGCCGCCTCGGG10.8849557522123894No Hit
CTGATAAGGTTTAACTTTCTCCGACTTATTTTCTTCTTTTTCCTTTTTGG10.8849557522123894No Hit
ATATTCGACTCCAAAACACTAACCAACCTTCTTCTTGCTTCTTAAAGCTT10.8849557522123894No Hit
TTTCCTAATTCACCAAAGCAAAACAAGAAAACGATGGGGAGTGTGAAAGT10.8849557522123894No Hit
GCTATATACTANGCATAAAGTGTTTTCTTAAAGGCAGCCGAGTGTTTAAT10.8849557522123894No Hit
GTCTTGAAATTGGACCGTTTATAAAAGTTTTCCAAATTTCATACGTATGG10.8849557522123894No Hit
CCCCAAATATTAGGCAGATAGAAATGGTCGACATCTTTGAGCCACTGCAT10.8849557522123894No Hit
CATATATATTTTGTTCATTCTAAACGATGATTTAAATTTCAATGCATATG10.8849557522123894No Hit
AACCTTTAGTGTCTATAATCTTATTCAGAACTTGCTTTCTCTTTTCATCC10.8849557522123894No Hit
ATGTTGATTAACCAAGAAACATTGGTGCTGGTGATGCCCCAAGGAATCAT10.8849557522123894No Hit
CGGGCCGCCTGCTCGGGATTTGCCACAGCATTGACCTGCTCGGTTTTGGC10.8849557522123894No Hit
GATTAATCAGTACACAAGCAGATACGCGAAAGATTGTCTGCATTCCGTAT10.8849557522123894No Hit
CTATGGAGATAGAGACATTTTTTTGTTCCATCTTTGTCTGNTTTTCCAGC10.8849557522123894No Hit
GCATCTTCTTCAGTAGCTTCATATTCACCCTCGAAAACTGTAACCTCTTG10.8849557522123894No Hit
AGGTTAGGTGGAGCGGCTGTGGGATCGGGCGGACCAGGGGCAGGCGGCGC10.8849557522123894No Hit
ATATTGAGATCCGCTAAAACAAGGTGATTGCTAAAGGGAATTACTGAATA10.8849557522123894No Hit
ATATAGAAGAAATTGATGGTGTATTAATTCATAGTGTGTGCAAAATGTAT10.8849557522123894No Hit
CTGTGTATCAACCATGTGCAACATCCGGATTAGTTCGTTTGGGATCCCGT10.8849557522123894No Hit
GAGTGGTATAATTTCATAAAAAACCAACCGCAAACAAGTTCACAAGAACA10.8849557522123894No Hit
GAGTACATCCGCACTATCCAGGTTAGACCACTAAAAAGCTCCCAGATCCA10.8849557522123894No Hit
GAACTACGTAGGTCCAAAAGAAGAAACGTGAGACCGGATATCTACACCGG10.8849557522123894No Hit
ATTTCACTCTGAAACGCTAACCAAGATTCTTCTTGCCTTTCTAAGTATCA10.8849557522123894No Hit
GATGGTCCCTTACAGAATAGGCTTCAGTAACAGGGGATCTCTCAAAAAAT10.8849557522123894No Hit
TAATATTACTANTTTCGTCGGCTCTAATGGTTACCATGAGTATTGTCCTG10.8849557522123894No Hit
GANTATAAAGAAAGTAAAAGGGTAAAAGAGTCTAAAAGATGGTGATGTTG10.8849557522123894No Hit
TAACAATATAGACAAAAAATTTGATTGTGGGCTCAAATTTTCATATACGA10.8849557522123894No Hit
TTTTATAATTGTTTTCAACCGAATGAAAATGAATTTCCACCAGACTTATA10.8849557522123894No Hit
TCTATATTCCACCCGATGAGACTAATGCTGTCACTCGAAACCAAGCTGCT10.8849557522123894No Hit
TAATTAACCCCATTTAACGTGCGTACCTATGCCTAGACTCGCCTTGCAAG10.8849557522123894No Hit
GAGAAACGATGGACGGTGGCTTCTTGGGATGTTGTTTGTGATGGGATTTA10.8849557522123894No Hit
ACCTTCTTCTTGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCATATG10.8849557522123894No Hit
ATAGAAGGATAACCAGATATAACACAAAATTTATCAGCCGATTATTTTTA10.8849557522123894No Hit
AATTTAATCTCTATCGAATTTGAATATCAGAATAGTGGATATAGTCATGA10.8849557522123894No Hit
ATGTTCATCTCTGTATTTAACATTGGTTTGTCAAACAGAGGAAGGAAGAT10.8849557522123894No Hit
CACTACATCTTATACTAAAATAATAAAATTGAAAGAAAAAGAGTGATGGG10.8849557522123894No Hit
GAAATAAAACGACGTAAACCCTAACAACTACGAACCACATATAATTTAAA10.8849557522123894No Hit
GCTAAGATGTGGCCCCATAACGATGTGTCCTACTATTTTATTTTCCTGGA10.8849557522123894No Hit
GAATAAATTAAATACATGCATTAAAATACGAAGGCTTCTTATTCCACAAC10.8849557522123894No Hit
GGATTTTCCTTCCTTTTGCCGCATTTCGCTCAAAGGGTTGAAGGGAGATA10.8849557522123894No Hit
GACTTAGTTGATACCTTATCATTTGAAGCTCTCAAAAAGGTATGGTTTCT10.8849557522123894No Hit
TGCCATCACTGCGCAGGCCCTCTTACCAGAAATTTGGTATTTTTCTGCAT10.8849557522123894No Hit
ATTAGTAGGTAGGAGAGGATTAATGTCGGATCCCCAAGGACAAAGGATTG10.8849557522123894No Hit
ACCTTCTAAATAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAA10.8849557522123894No Hit
ATATTAACGGATCGAAAACCTCGCTTGCTCGACTCTCATGCTTCATCTTG10.8849557522123894No Hit
ATTATATATAGTAAAAAGTATTTATGATTAAGGAATTGGAAATCGCGTAT10.8849557522123894No Hit
CTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGC10.8849557522123894No Hit
CCATTATCTTTTCTTCCTCCACACGCAACACTACAACTTTAAAAGAGATG10.8849557522123894No Hit
AAATGACGAAGAGAAGCTTGTACCAGTGGAATACTCTTCTTAAGAGTTTA10.8849557522123894No Hit
GAAAAAATGATGTTTAGTTATGACGAGACGAGTTTATATGGCGGGACGAG10.8849557522123894No Hit
GAATCATTGAAACAACAATATCATAGTCACGGGAAAACAAACGATCTAGA10.8849557522123894No Hit
CTTATATATATATTAATATATATTATATCAAAAAGATGGACAATCAAATC10.8849557522123894No Hit
GCACCATATGTATTACATATTTACATTTGATCCATTCTGGTGGAGGATGG10.8849557522123894No Hit
ATTTAAGGCAGTCTTCTTTAAATTACAATCTCAGTCCGGAGACAGCTTCT10.8849557522123894No Hit
TGTTTATATAGTCAAAATGTGTCATAATCTAATACATTTGACTAATTATA10.8849557522123894No Hit
AATTAGGACTCATGAAAAAATTGATAATAACACGCAAGAAAAAAATGCCT10.8849557522123894No Hit
CATCAAAGATATGTATATAGGTCAAATATCACTTAAAGCTGTTGATTTTG10.8849557522123894No Hit
CTTATTACCAGAAGATGGGAAAAGCTTCAGGAAGCTGAGATTTCAATGGA10.8849557522123894No Hit
GTCTCTCTGATATGTCCCTGGAAGGAGATACTCTTTCTCCTCCTTTAGCA10.8849557522123894No Hit
TCTCAATAGATTGGCGTAATTTTTCTACCGCATGTACATTCCCATAATGA10.8849557522123894No Hit
GAATAGGAGAAATCCTATTCAAACTTGTGATTCAGATCCTGCGAGTTTTT10.8849557522123894No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)