FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_049.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_049.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62
Sequences flagged as poor quality0
Sequence length151
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTACCACTCCGGAGGTCAGATGGGTCTGTGTGGCGGGGCTGGTGTGGCCA11.6129032258064515No Hit
AGCTTGGGGGTTGCGGGTGTGTGGGGGGGGTCTGTGGGGGAGGGGGCTGC11.6129032258064515No Hit
GGGGGGTGGGGGGTGGGTGGGGGGGGGGTTGGGGGGGGGCGGGGGGGTGT11.6129032258064515No Hit
GCGTGGGGTTGGGGGGGTGGCGGGGCTGGGGCGGTGCGGGGGGGGGGGGG11.6129032258064515No Hit
GTGTCACGGGGNCGGGCTGGCCGCGGTCTCGGGCGGGGATGGGTGCTGGC11.6129032258064515No Hit
GGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.6129032258064515No Hit
CATTAGACGCAGTTGGCTAATCATACATTCAATGCCAATGGAGAAGTCCA11.6129032258064515No Hit
AGACNTCAGTGGACAAAATTACTTCATGNTTATACCAATGCAAAAAACGA11.6129032258064515No Hit
GTACAGCGTAACACGCGATTGCGGGTGGTTGTGCGTATTGTTTGGGGGTT11.6129032258064515No Hit
ATATAGAGCTCATAACCAAAATTATTTTTGTTGTATAATTTGTTTTGAAT11.6129032258064515No Hit
CATTGATTGTTCTCACAAATACCGAAAGCCAACTCTATCTATATGAGAGA11.6129032258064515No Hit
GCAGAAAATCAATATCGAAAATAATAATTTTGTAGTAATTAAATAATATT11.6129032258064515No Hit
GTGTGGGGGGGGGTGGGGGGGGCTGTTGGGGGGGGGGGGGGGGGGGGGGC11.6129032258064515No Hit
GGTTTAGAATTTGAGTCGTTTGATTCTATTTTTTCATGAAGATTTTTGTG11.6129032258064515No Hit
GTCTTGTGCGGCAGTGTGAGTTGTCCAGGGGGTATGGGGGGGTGGGGGGT11.6129032258064515No Hit
AGTCGCGAGTCGTCGGATTGGCGGGTACTGGTGGGCTCAGGCGGCTGGTG11.6129032258064515No Hit
GGGGGGTGAGGGATGGTTGGGCCCTGTCAGGCCCAGGGGGGGTGTGGTGG11.6129032258064515No Hit
CTCTCGTGGCGTTGTTGGTAGGTGTGTGGGAAACGGTTTATTGAGGGGGA11.6129032258064515No Hit
AGTCCCGGGGGTTGCGGGGGGTCCCCGTACAGTGGGTGGGGGGGGGGGTC11.6129032258064515No Hit
GAAGAAAAGAGAGTCCGGAATCTGAAGTTTCTTCTATCCATCTGAGCTCA11.6129032258064515No Hit
TAATTTTATTATAAATTTTAGGGGCAGTTTTTGACTCGAACAACTTGGTA11.6129032258064515No Hit
CGGGCGTGGCGGGGCGGGGGGGCGGGGGTGGGGGGGCGGGGGGCGGGGAG11.6129032258064515No Hit
ATATATGTATGTATGACGAATGAAGTAATTTTGTTTCATTTATCAGCGCC11.6129032258064515No Hit
GTTTAGGGCATGCTTCTTGGGTGTGGAGCTTGTGGTGTTTCGTATTGGTT11.6129032258064515No Hit
GTGTTGATCCCNGGGGGGAGTTCCCCGGTGGTTACTCTTGTATAAGTCGC11.6129032258064515No Hit
CATATTTTCCGTGCCGACGAGTTTTTGCCGTTGTGGTGGGGTGTTTTTAC11.6129032258064515No Hit
CGTCATGCTGATGCCAGTCTTCTACTACATCGGATATTTGATGATAATAT11.6129032258064515No Hit
TTGTGGGAGTTACTGTATGTTCCTACCGTGGGGTCGTTAGTGGGTTTCGG11.6129032258064515No Hit
GAGATACAGGTATTGACTTTTTGCCAAAATCTCCTCCTATATATTAAAAA11.6129032258064515No Hit
GGCGTCGCCCCGCGCGAGGGACGGGGAGGTCCCGCGGACGCGCCGCCGGC11.6129032258064515No Hit
GTGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.6129032258064515No Hit
GGTTACGTTTGGTTAGCTGGGGGTGTCGGTTTTGTCTGGGGTGTGGGGGG11.6129032258064515No Hit
CTTAGTCGGGGNATCCAACGTGTTGCGGGGGGTGAGGGCTTGGGTGGTCC11.6129032258064515No Hit
CGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.6129032258064515No Hit
TGATGGTGGTGGTTGTGTGGCCTGCCTGTGCGCCGGGTTTTGGCTGCGTC11.6129032258064515No Hit
GATGTGGCTTTTGCCCCTTACGGAGAATATTGGAGACAAATGAAGGTAGT11.6129032258064515No Hit
AATGAGTTCTCTACAGTGTTGTTGGGGCTGGAGTTGTAGTATTCACGTTG11.6129032258064515No Hit
CCGTTGGGCGGGCTGCGGGGGGAGGGGGGGGGTTGGGTGGGGCGGTGGGG11.6129032258064515No Hit
GTGAGGTGTCGTGGGGGGTTTTGGCGGGGTGTGGGGGCCTCTGGGGGGGC11.6129032258064515No Hit
CATTTACCGGAAAGCTCGCACCATTGATTCCCTGAGTGATGCTTTGTGTG11.6129032258064515No Hit
ATGTCGTTGGGGGTTTTTTGTGGAATTCGCGGTGGGTTCCGGTTCGTTGT11.6129032258064515No Hit
GATTTTGTGGGGGGGTGGGGTGGGGTGTGGTTGGGTGTTTCGGTTGGGTT11.6129032258064515No Hit
GGATTATGAGAAGGATCTGAATTCGAATCTACGGTGACAGCTTCAGAANA11.6129032258064515No Hit
CGGCGCGTGTGTGCGCCTGTGGTAGCGGCAAGGGGAGTTGGGTGGGGGCC11.6129032258064515No Hit
ATCCCTTATGGGAGATCTTTTTGGGCTTCTCTCTGCGGTCTCTTATGGAC11.6129032258064515No Hit
GCGAAAACAGAGAGCTACTTATCGGATTGAAGATATAGAGGGTAAAGCAA11.6129032258064515No Hit
CCCTCGAAGATATACGGTCTCGAAAAAAAGGGCCTCGAGTGTCCAGGGCG11.6129032258064515No Hit
GCTGGAGGTAGGGTGGGGGGCCAGAGGGGGGACGGGTCGTTGCGTGTTGG11.6129032258064515No Hit
GTATTGTTTCCTTGTTAGAAGACACAAAGCCAAAGACTCATATGGACTTT11.6129032258064515No Hit
TCTGCGGATGGCGCGAGGTTGTGATTTTGTTTTGGTTTTGTATTTCGCTT11.6129032258064515No Hit
GTTCCTGTGTGTCTGTCGTGCGTGTGCCCATGGGTGGGGTGGTGTCTGGG11.6129032258064515No Hit
AAAAAATGTTATCTGAATTCTCCCTTGATACGACATGCTATTTTTTCCAT11.6129032258064515No Hit
GAGCTGTGGGTCGGCGTGTGGAGGGGCGAGGGGGGGGGGGAGGGGGGGGG11.6129032258064515No Hit
GGTGGGTGGGGGGGTGGGGTGCGGGTTGGGGGTGGGTGGGCCGGCGAGGG11.6129032258064515No Hit
TTACCGTATAGTGCCCGGGGTTTGGTTGTGGTGGTTTGGGCCGCGGGGTG11.6129032258064515No Hit
GGGGGGTGTGGGGGGGTGGGGGGGGGGTGGGGGGGGGGGGTGGGGGGGGG11.6129032258064515No Hit
GGGGGGGGGGGGAGGGGGTGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGG11.6129032258064515No Hit
GTATTATAAGTTGTGTAAATATAATTCTCTTATCCATAGAGGGTGAGATT11.6129032258064515No Hit
GTGTGCGGCGGGGGGGAGCGGGGGCGGGGGGGGGGGGGCGGGTGGGGGGG11.6129032258064515No Hit
CGTCATGCTGATGCCAGTATTCTACTACATCTGATATTTGATGATAATAT11.6129032258064515No Hit
GATTTGGGCGGTTGGTCGGTGGTTGGAGCCTGTGTGCGGGCGGGCGTCCG11.6129032258064515No Hit
AAATAAAATAGATAAATTCGCATCTACCAAATAAAATAGATAAATTATTT11.6129032258064515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)