FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_048.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_048.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81
Sequences flagged as poor quality0
Sequence length151
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTTAGTCTTAACATTAATTAAATTGTCAGATAGACTGATTCTATAGAT11.2345679012345678No Hit
ATTCAGGGTTTAAGGTTTAAGGTTAAGGTTTTGCGTTGAGGGTTTAGGTT11.2345679012345678No Hit
GATAAAGAACTTAGTAAAATTAAAACAAAATGATAACAAACATTTAAAAA11.2345679012345678No Hit
TTGTTATACGATTCAAAACCAAAAAACTCATAAGAACTTTGGCTTCACCA11.2345679012345678No Hit
AAAAGGGAGAGTAGTGTGTACCAGAAGAAGAAGATGAACAGAAGCCTTCT11.2345679012345678No Hit
ATTTAGATATTAACAAAGTCTGATCCAAATGTAGTTTAACTTAAAAATCT11.2345679012345678No Hit
ATATAGACTTAGGCTAAACCATGAATGCTTTGAGAAGCAAGAAGAAGGTT11.2345679012345678No Hit
ATGTGATTCCATATTAGACCGAGTGGATACCTCATATAAAACAGAAAAGT11.2345679012345678No Hit
CGTTTACTCAAAACATCTGTACGAGACCGATAATCTCAAAAAATTGAAAA11.2345679012345678No Hit
GTTCTTACTCTCTCGTTGAACTGTAACTTTCCTCGTAGATCTAGTTTGTT11.2345679012345678No Hit
ATCTATTCTTAACGAGCTGTGATGCATGAAGACTACTATAAAACTATAAA11.2345679012345678No Hit
GCGTTTGGGGTTATGTTCTGATTTTTTTTTGGTCGTTTGGCTTGAATTAC11.2345679012345678No Hit
GGGTTGGGCCCTTCAGGGAGGATCAGAAAAAGCGTAGGAAAGGAGACTGT11.2345679012345678No Hit
TGATAATCAACCTTGTTGTTGCAGACTCACCTGTGTCATATTTGGTGCGA11.2345679012345678No Hit
ATAAAAAAAATAACAACTTAAAAACAATGAAAATAAAACAAATTTTACAT11.2345679012345678No Hit
ATTATGTGGTGTGCAGTCAATAGAAAAGAAGCAAATAATGTTTTACAATA11.2345679012345678No Hit
CTAATAATCAATTAATCTAAAAAAACAATAATTTGATAAAAAAAAATATT11.2345679012345678No Hit
GAGTTTGTCTGCCCATGCATCCTTCTTTTCTTCAAGGTGTTTCTTTAGTC11.2345679012345678No Hit
AGTATATAAAGACAAGCAGAAACAACTACAAAAAACAAAATATAGAATTT11.2345679012345678No Hit
GTAAAATATTTATATTTATAAAAAAAAATACTAAAAAACTTAATTTATAA11.2345679012345678No Hit
CGTATATATCCCCGAGTTGTTTATGTTGTGGAAGTTGAAGTTATGACGAG11.2345679012345678No Hit
TCATTGGATAATGTTGATGTAACCTTGAATTTGTTCTTTCACTTTTATGT11.2345679012345678No Hit
ATGCGTTCCAAGATGTTTGCTAGGCCAACCTGTTGGTAATTGAATTGAGG11.2345679012345678No Hit
ATGCGTTATGATCTTCAGGTTGGTGAGTCGTGCTGTAGTGTGGTGTCTGG11.2345679012345678No Hit
CCTAATTAACTCACTGGTAATAGTATTGCTTTAATTCGGAATCATTCATT11.2345679012345678No Hit
GACTTACGATATGAAAATAAAATTACAGAAAAGAGAAACAAAATTCACTT11.2345679012345678No Hit
GCGTCTCCCCAAGCTTTCTCTTCCGTTTCTTTTTGGACAAGTCTATCTCT11.2345679012345678No Hit
AAAAAGATCTAAATAACATTCAATTATACAGCCACTTTTCTTAAAACAAA11.2345679012345678No Hit
GCTTTTATCCTTTAGTGTTTCTTTGTGTTCTTGAATCTACAAAACTTAAT11.2345679012345678No Hit
CTTATAATATTGTCTAATATGCGGCGGACAAATATAGTTTCGTTTTCTCT11.2345679012345678No Hit
ACCCTAATATTACCTTATAACCCAAATTCGACCAGACAACTTTAATTTAG11.2345679012345678No Hit
GGTATAAACTCCTCATATTCTTTCACATATAAACATAAGCGTAAGTGGTG11.2345679012345678No Hit
CTTCTTGATATCCTTCTTCGTAATAGGCCTCTCCGTTTAGCTCATCGGCT11.2345679012345678No Hit
ATATGAAAAGTAAATTTGATATACATCAATAAAGTAGCTAAATACCTAAA11.2345679012345678No Hit
GAAAAATATAGCGGAACGGGTTTTGATTGATATGAAATATAGCAGGACGG11.2345679012345678No Hit
CATTATTCACTGAGAGGCTAGAAATAGATTTTCTTTCGGCGGAAAGAAAG11.2345679012345678No Hit
GGAGCTGACAAAGAAAGCTTCCAAAAAATCTGAACGTAGCTCAAGCATGA11.2345679012345678No Hit
GTTAAATCGAGTCATGGTCTTGTCTCATAGAAAGGTACTTTCTTTTACTT11.2345679012345678No Hit
AGTCTTCTGAAACAGCTTCCAGCTTGTTCCAGCAATCAGCACTCCTTCTG11.2345679012345678No Hit
CTTGCTCACGACGCGGCGCATCTTACTACAATTGCCGACGTGGAGCTCAG11.2345679012345678No Hit
AATGTATGCATNTCGATTAGGNTCGTATTCTATGGTTACGATTCTACCAT11.2345679012345678No Hit
ATCTTATTTCGTGAACAACAATCTAAGACCCATGAAAAGTGGATGACATC11.2345679012345678No Hit
GTATATAACGCAGCTTGAGTCGTAAAATCTTGCGCTATGAACGCATAAGC11.2345679012345678No Hit
CTTATAAAACATCTGGGATGATGGCCGTGAAGTGACCAAACGCTTAATAC11.2345679012345678No Hit
CCCATTGTCCTTAAAAGGTTCTCCTTTTTCATGCGAAGATACCACTGGAT11.2345679012345678No Hit
ATTTAAATGCGGACTGTGTAACAGATACCTCTCGCAGAAATCTCCGTGGG11.2345679012345678No Hit
CTCTAGTCCTGTAGAAAATATAGACACACGTAAGAATGGGGTCTATCCAG11.2345679012345678No Hit
AGTTTAGTAACAAGTCAAATTAGGAAATTTGAATAGAAAATAACTCTTGA11.2345679012345678No Hit
GTTCTATTTGACAATAAAGGCGAGTCGATAATGGCTCAACGTGCTTATGC11.2345679012345678No Hit
GGTCTATGCTGTTATTTTAATTTTTAAAGAAATACTTTTGTTATTTGGTA11.2345679012345678No Hit
GTATATTACCTNCCAAGTGAGTGTCACCATTTGTGGAGAGAACCGCAAAC11.2345679012345678No Hit
ATGGAGAATATGGTGTTCTTAGCATGTTCAACCAACTTCATGATGTACTT11.2345679012345678No Hit
ATGTTCTTGAGATATTGGAAGGTGAAAGAGATGCTTAGGAGGTTGTTGGT11.2345679012345678No Hit
ATATTGATAAACCAAAGCCATATCCGACACTTAAGTAGTGAAACTAAAGG11.2345679012345678No Hit
GGTCCGATGTGTAACTGAAACCAGTTCCAACTGGTTGGTCCACGTAGATT11.2345679012345678No Hit
ATCAAAAGTAATCAAATAAATAAAAATTATATACAGGGATAGTCATGGGA11.2345679012345678No Hit
GGTCAATAGTGCTATTGACTCGTACTAATTTTAAATTAATGACGCCATGG11.2345679012345678No Hit
CTATTTCAATTTGGTTAATAAGAAACTTCAGTAACTTTAATAGATACAAT11.2345679012345678No Hit
GATTGAAACATTAACAAACAGAAAATAAATTACTAATTAATAAAAATAAA11.2345679012345678No Hit
TCATTCCTAACTCCAAGCATTAGAATATAATGATATTTGAACAAAAAAAT11.2345679012345678No Hit
TTCTAACACCATGCAAAATGTGTCCAAAGAAGAAAAGTAGATCAAACTAA11.2345679012345678No Hit
CCCAAACAAAGTTTTGTAAAAGCCAAAAAACACATAAAATTAAATCATAC11.2345679012345678No Hit
CGTGTGCTCTTTCGTTTCACACCCAATTTGTCTTTCAAATGCTTTGACTC11.2345679012345678No Hit
CTTTTGGGACATAGGCTTATGCAAGATGTTTCTCGCGAAATTGAAGCAGT11.2345679012345678No Hit
GGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGAT11.2345679012345678No Hit
GGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.2345679012345678No Hit
GTGGGCCTGGGGGGGAGAATAAGAGTCTCAAGGGTGTGATGGTACGTGAG11.2345679012345678No Hit
GTATATCAAGCATCGATTGTGGGTAACCAGGAACCAAACCTTTTGATTCG11.2345679012345678No Hit
ATAATAGCTCTTCTCTCATGCTAATAATGTTGATATTTCAACCAGATTCA11.2345679012345678No Hit
TTGTATCAGTGCAGAAAAAAGAGGATTGCGTGTAACTGGTTCTGAACTTG11.2345679012345678No Hit
GATCAAGACAATTGGCTGAATCCCGTGAAACCATTTCAGAGAAGTTCATT11.2345679012345678No Hit
GTTATTAGATATTAGAATTTTCTGAAAGGTAACTATCCCGCTTTCATATA11.2345679012345678No Hit
CCTCCCTGCCGCCACACGAGAGCGACATGGGGGCGTAAAAGGGGATCCTA11.2345679012345678No Hit
GTTTTTGATATATGAATTGAATAAATTTCATAATAAGTTAATAACAATGA11.2345679012345678No Hit
ATGTACACTCAGTATTATTAATGCATCTTGTCCCCTGTTCACCACTTTCA11.2345679012345678No Hit
GATGTGGAATCTGCCCTTAACCATTGTCTAGTCAACGAAACGCGGTATAT11.2345679012345678No Hit
AAGTTAGCTTCTCGCCACTGCCTTAACAAACAAGCGCGAGGACAAATAGA11.2345679012345678No Hit
GAGTATAACAACTTAAACCGCAACCCGATCTTAAAAGCCTAAGTAGAGTT11.2345679012345678No Hit
ACAAACCAACACACCCTACCTAATAATATAAATACAGATATACACATTTA11.2345679012345678No Hit
GTGCTAACTGGCTATTGGGGGAAGTAAGCGACAGTAATCGTCATGAATTG11.2345679012345678No Hit
GTGAGGTGGTACGTGTGTGTGCAGGTGTGCACGTGTGGGGCTGGGGGTGA11.2345679012345678No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)