FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_043.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_043.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTTGTGGTTTAAGTTGTTATACTCGATCATACACATGACAACAAGTCA22.4691358024691357No Hit
AATGCCAATTTAAATGGATTTTATGAGACGAACAGAGCCTGCATTACCTC22.4691358024691357No Hit
CATGCCAAGTTTGGCCTCACAGTCTAAAAGTTATGGAGTCATAAAGTTTT22.4691358024691357No Hit
GTTCCATAGCCAAGGCAAGCTCATCACTATCCTCGATTTCTCTTAGGTAG22.4691358024691357No Hit
GTGTATGATTGAGTATAACAACTTAAACCGCAAGCCGATCTTAAAAGCCT22.4691358024691357No Hit
ACATATGGGGGTGGTGGAGACTTGTAAGTGACTTTTGGAGAAGGAGAATA22.4691358024691357No Hit
GTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGATGCTGCTCAAGTT22.4691358024691357No Hit
GTTCCTGAACGGTTGGAAGAGCTTAAGGAAGTGAAGGGTAATGATGGTGA22.4691358024691357No Hit
CTATTGCAGCGTGGGAAGACTTGTCCACATCGACTTTGGTTTCATTTTGG11.2345679012345678No Hit
CTCTTGGGCAGGTTCTTTGGATGATTGGTGTGAGACCAATTGCTGATACT11.2345679012345678No Hit
ATACAGGAGAATTTCCAACTTGTACCTATACAAGTAAAATGAAATCAATA11.2345679012345678No Hit
TCATGTCATAGAGACTAGAGGAATGGAACCAACTCAAACGACACGGCCGA11.2345679012345678No Hit
GCATTAGTGCTTGAGGAATGTATCAGTGGAATATGGGGGATTTTAAGGAT11.2345679012345678No Hit
GTATTAGAACTTAAACCGCATCCCGATCTTATAAGCCTAAGTAGTGTTTC11.2345679012345678No Hit
GTATAGTATGAGTATTCACATTAGGTTAAGATGAAACTATATATATACAA11.2345679012345678No Hit
GATTAAATGTCACTGTCACTGAGGATTCAGCTTCTTCTTCTCCGTGAACT11.2345679012345678No Hit
CCCTAACAATGCCGCCGAGCGGTGGGTGCTTGGGTGGGCTTGCGGCGGCG11.2345679012345678No Hit
ATCGCTGAGTTGGTTATACTTAATGCTAGATCTAGAGTAATTAACTAGAT11.2345679012345678No Hit
AGCAAAATCCATGGAGAATTGTCTTATCACAGCTCCATTTCATGTGTATG11.2345679012345678No Hit
TCTCTATTTCACTGTGATGTGGAAACGTAAAATTGGGGTTTCGTTTTTTA11.2345679012345678No Hit
ACTTACCACTATCCAACCCAAAATGCCAAATAACCGACATGTCTCACACA11.2345679012345678No Hit
GGTAAAAGAGTAATTGAACAAACATTGAAAAAAGCCGTGCCTGAAGGTTC11.2345679012345678No Hit
GAGTTCTTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCAGGGGCCTGA11.2345679012345678No Hit
GTTCTAATTCGATGCTAAGACATGATAATTGTATCAAATCATGACTGTGT11.2345679012345678No Hit
GTGTTAATAATATTCAACCTCATAATTAAGTTCGATATCTTGTTCGATCC11.2345679012345678No Hit
GTTTTAACAAAATAAAAATAAAATTATGAATATGTGTGATGATAAACATT11.2345679012345678No Hit
CATAATAAGTGCATAAGAACAAAAAAAGTGCATGAGAAAAAAAAGAAGAC11.2345679012345678No Hit
ATCATGCACATTACAACAAGTCATATTCGACTCCAAAACAATAACCAACA11.2345679012345678No Hit
GTCAAAATATTTTAGTCGTTGCGGGACGTTGAACCCACACATTTTTCGCC11.2345679012345678No Hit
GATATATATATAATACATGTGGGGAAATAGAAGGAAAAACCGATTGTTTA11.2345679012345678No Hit
GTGTAGTGGGAATTTTGCCCGCACGCGCGCGCGCGAATAAGAATAAGAAT11.2345679012345678No Hit
ATACGTAAGCATCAAGGATTCGGCGGTAAAAACTTTCATTTGGAAAAATA11.2345679012345678No Hit
CCTTCTTCTTGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCATATGA11.2345679012345678No Hit
GATAAAGAGAACACAAGGTCTGCAGAATAAAACTAGATAAAAAACTTGTT11.2345679012345678No Hit
ATCAAGAAGCGATGGGAACGACGGAACCCATGAATATAGAGGATTCTATT11.2345679012345678No Hit
GCCTCGCGCAGCCAGAAGCTGAGCGTGCCCAGCACCAGCAGCAGGGGCAG11.2345679012345678No Hit
ACCTAAATGTTTTTACAAGGATTCTGATGCATAAGTTGAAATAAATAGAA11.2345679012345678No Hit
CTTAACATGTATGTGGACCAACGTTGGAAACATGNTGACATAACATTCAT11.2345679012345678No Hit
GGATACATTAGCATGGGATAACATCATAGGATTTCGATCCTATTGTGTTG11.2345679012345678No Hit
GATATAATATCTTCATACTCATAACCGGAAAAAAAAGAAAGAGANTTGAA11.2345679012345678No Hit
CCTTGTTTGTCATGCGGCATGATCTTTGTCAGCATTCAGCATGTATGTTG11.2345679012345678No Hit
CAATTGAAAACAGGATTTCCTTTTTTCAAGATTCTTTATCCTTACTTTGA11.2345679012345678No Hit
GTTAAGTAGGGTCTTAACAAGAGAATTCCTATCAATAATAAAGAAAACAA11.2345679012345678No Hit
GTATTTCAAATACTTCGTACAGTGCCTAACAAATTATTGGGTGTTCTTTT11.2345679012345678No Hit
GCCCCGTAACTCTTCCTCAGCCATGCTTGGGCAGAATAGCGGAGCCCGTA11.2345679012345678No Hit
AAGTACACATGTACGAAATTCCTCATTGATACATCATTCCTCATTACGAA11.2345679012345678No Hit
CTTCGTAATCTGTCCACACTAATGTCTCGAGACGGAGCAACAAAAACTCA11.2345679012345678No Hit
GATATATATATAATACATGTGGTTAAATAGAAGGAAAAACCGATTGTTGA11.2345679012345678No Hit
GGGGGGGGCGGGGGGGGGATGCGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.2345679012345678No Hit
TCTCTAAATAGAACGTTTCTTCTTCTACATGTAGAAAAGGAATAAATAAA11.2345679012345678No Hit
CCCCAAGTGTTATACAAAAGAGATATTCACCAAAAAAAATCTCACTTTTA11.2345679012345678No Hit
TCGTTAGCTTAAGGCGAAACCTGATCCGATCGAAACGTCTTTTCTCAAAT11.2345679012345678No Hit
CAGTAGTAGAGTAAACAAGAAAATCAATCATATAAAGAATTCCTAAGGAT11.2345679012345678No Hit
CTGGTATTCCAATCCGAAAATAAACCGACCTGTGTTGGTTTGGTACTTAG11.2345679012345678No Hit
GGGGGAGGTCATAAGCGTCTATACCGTAAAATAGATTTTCGACGAAATGC11.2345679012345678No Hit
ATACCCGTATTAGGCACTAATCTATTTTTAACATTTAATTAGTTGGGGTA11.2345679012345678No Hit
AACAACAACAGAACGTGTTTCGAACGAAGTTTTAGTCTTTCTTTGACGCT11.2345679012345678No Hit
GTGAAAAATGGAAATGATTCCCATATTGATGAAAACTTGAAAAGTCGGAA11.2345679012345678No Hit
GTCTAGTATATGGTGATATTTATACTTCTTTCCACATACGGAAATATGAA11.2345679012345678No Hit
GCTTACACCCATTCGCATTAGTTCATCCAAAGTTCCTTACCCTTATGCAC11.2345679012345678No Hit
GTTATTATGTTTTGTCTCTAAAGATTGAATCTTTGCATCAATGTTTCTTA11.2345679012345678No Hit
CTTCGTTGGTATATAAAGATACTTAGGAGCACATTGCTTATGGGACGAGG11.2345679012345678No Hit
TATCTATACGGATGGATCTTATATATATCGTAGAATTCTTCTATATATGG11.2345679012345678No Hit
TGATGAGTTCGTTCCAGCAGTATGGTGGTCCTGTNGTTTTCAANCTGGAA11.2345679012345678No Hit
CTTCTTGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCATATGAGTCT11.2345679012345678No Hit
TCTCTATTTCACTTTGATGTGGAAACGTAAAATTGGGGTTTCGTTTTTTA11.2345679012345678No Hit
GGATAGTGTTTGATTCTACAATCCTAAGAATTTGATAATGGAGTTCCTTA11.2345679012345678No Hit
TTGTATTAGTGTCTATAATTGATTTGTTCTGTGTAATACTAATTGATAGG11.2345679012345678No Hit
CAATGAAAATGGCTCCTTCTTTAGTGCGATTATATGAACAAATGCCTGAA11.2345679012345678No Hit
ACTTGTTAGTCATATTCCTTCTTTAAAGTCATTTCATTGTGATGTTTCTT11.2345679012345678No Hit
TTCATAGACAGCATCTCGTTCTTTTATCAGAGGTTCTACCAATTGATATG11.2345679012345678No Hit
ATATAAACCATGTCGTCTTATTCATTCACAGTATTTGTAAAATCCATGGC11.2345679012345678No Hit
GTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCAAACCG11.2345679012345678No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)