FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_031.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_031.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1469
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTAACCAACC60.4084411164057182No Hit
TTCTTATACTCAATCATACACATGACATCAAGTCATATTCGACTTTAAAA40.2722940776038121No Hit
GGGTTTAGAGTTTAGGTTTCAGGGTTTAGGGTTAGGAGTTTAGGGTTTAG40.2722940776038121No Hit
ATATGGTACTNATTTACTACAACTCACTAGTTTACGTTCACCTGAAATTG30.2042205582028591No Hit
CAATATGGACACGATAATCTTCCATCTGTTGTCCACCCAGATAACATTCC30.2042205582028591No Hit
GATGAATAGATGGAAGATAGAAGAGAAAGAAAAAAAAATTCTAAGTATCT30.2042205582028591No Hit
TGTTTCATCAGTTCTTGTCGTTTACCTAGTGCGGGAACTTTAGGGGGATG30.2042205582028591No Hit
GGCTTCGCGGTGAGCGAAAAGATCGATCGCGAGCATGAGCAGAATTGCGC30.2042205582028591No Hit
ATGTCTACCTTTACTGAAGGATCATTATCATGTGACACAGGGATTTTAAG30.2042205582028591No Hit
GATGTTGTAAGTTACGTTGTCCTTTCATATTTATTTAGTTAGTAAGATTT30.2042205582028591No Hit
AGACACAACCGTAAAAAGATAACCGTAAATATTTTAACGAAAAAGTACGA30.2042205582028591No Hit
GCTTTCATGGTGTAGCTAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTC30.2042205582028591No Hit
CACTAAAAACTTTAGAAAACGTCGTTTGTTCTTCAATTATTGAAACCTAT30.2042205582028591No Hit
CACCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAG20.13614703880190604No Hit
CTTATACTCAATCATACATAAGACATCAAGTCATATTCGACTCCAAAACA20.13614703880190604No Hit
CACACACTTCTCTATTTATTTATCTTACCTTTTCTAGGCAATCTCCCTTA20.13614703880190604No Hit
TACCAGCAGTAGTATAGTGGTTATTAGAGCTTTGAATGATGAACAGGATT20.13614703880190604No Hit
ATCATCGCGCAGTAAATCAACAAAGCCCAAAGTTGACTCTCTGTCTCCTT20.13614703880190604No Hit
ATCATGCAAGAACAATGTTTTTATAGTAAACAGCCCTAAACAACATGATA20.13614703880190604No Hit
GCAACATACTTTCGGCGACTCTTTGAACGAGTGATCTCGATTTCCTTTGT20.13614703880190604No Hit
GTACCATGATGTTGAAGCAATGTATTCTTCTTTAACATTCTGGAAAGAAT20.13614703880190604No Hit
ACCTATACCCGGCCGTCGGGGCAAGAGCCAGGCCTCGATGAGTAGGAGGG20.13614703880190604No Hit
GCTTTACTCGGTCGTATCCCGTCTGCTGTGGGATACCAGCCAACTCTGGC20.13614703880190604No Hit
CTACTAAATTACTAATTATCACATTTCGCTAAAGACTTGCTATATTTGAT20.13614703880190604No Hit
GGTTAAAGCGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTAC20.13614703880190604No Hit
ATAGTAAACCTCAACCAAAATATCTCAAACCCGTAAATCTACTAAAATAT20.13614703880190604No Hit
GGTCCGTGGATTCATCCACTGGATCATCGTAGGCTAGCCCATGAAATCTT20.13614703880190604No Hit
GCAATAATATTGGCATCTGCTTAATGGCTGTTCCATCAAGCAGCAGAATC20.13614703880190604No Hit
GTTTCAGCTCGCATAGACAGTTGGGAAGAGACTCTAACAATTTACAGTTT20.13614703880190604No Hit
GAGTCTGATGAAGATGTGGAGGACACCATGAGGCTGGATAGAGTAAATGC20.13614703880190604No Hit
GAAATAGCATGTTCCATAATTCACAACATGTTGCTCCTGCTTTTGTTTTT20.13614703880190604No Hit
GTTGTTGAACTTTAAAAATTGCATCAAATAGTTATAATATACATAGGTTG20.13614703880190604No Hit
CAACAAAACTAGGGGAAGGTTTAAAAAACCCACGGTAGTATGAAGTGCTA20.13614703880190604No Hit
TAGCTACACTTATATGGATAGAAGCTTTACTTATATCGGAAAATCGTATA20.13614703880190604No Hit
CTGTTAATCCTAATCAAGTAGATAACAAAGCAGACAAGTCATTTTTATTT20.13614703880190604No Hit
CCAAAATACTAACCAACCTTCTTCTTGATTCTCAAAGCTTTCATGGTGAA20.13614703880190604No Hit
AAATAATATATTATGAAAATAAAAATTTGTTTTAACATGTTTGAAAAATA20.13614703880190604No Hit
TCTTGCGATAGAGTGATTCATCAAAAATTTGATTTTTTTTATTTGAACAC20.13614703880190604No Hit
GGTGATGGAAAATGGATTGTAAAGAAAGGTAATGTTAGCTCAACAGGAAG20.13614703880190604No Hit
CATATGCCTAATCCTTCTTTTTATACACCAAGCGGAAACATATGCAAATA20.13614703880190604No Hit
TACTTCAACCACACCAACGACGGATCTAGCTTTGGTTCCTGAATGGTAGA20.13614703880190604No Hit
AGCTACAGGAGAACCAGGAACGGAGAGCTTTCCCCCCCTTTTCCGCCCCA20.13614703880190604No Hit
GTCTATATATATGTGTATATTTTTTACATCAACTCTGCAAAAAAATAAAT20.13614703880190604No Hit
GGTCAATGTATCTGATGATGTTGATGGAAATGACAGCGTCGATATTGATC20.13614703880190604No Hit
TTAGACAAGTCTCCAGGTTCTTGAGGACGTAAAGGCTCTTGGTCAACTTC20.13614703880190604No Hit
GTACGATTTAATTCAACACTTTGTTCGTTCGGATTTGATTGTGTCATAGC20.13614703880190604No Hit
GTTTTTGTTTTTTGGTTTAGTGTTACGGATCACTGAAGCTGTGCTTGTGC20.13614703880190604No Hit
ATTCTATACATATCCATAAGTTCGGGGATATCTTTCGTTGATTATTTGCT20.13614703880190604No Hit
GAACTTGGTCTTCCCCCGTAAGGAATTCTTCCAATAAACCAGAGCCCAAC20.13614703880190604No Hit
GGTTGCGATCGAGTACTTTGGGTGAAAGTGTGATTTAGTATCTTGACTTT20.13614703880190604No Hit
CGGTTTAAGTTCTTATACTCAATCATACACATGACATCAAGTCATATTCG20.13614703880190604No Hit
AGCAGTAGAGAAGATTCTCAACTACAAATTCAGTAACAAGAGTCTTCTCA20.13614703880190604No Hit
ATACAAGACAATAGTGTCNACCGACACTCACCTAATGTCGATCGACACTG20.13614703880190604No Hit
CCATTGGTGCTACCTAGAGAGTTTATCATCCTAAGAACTTGCCAGCAAAT20.13614703880190604No Hit
CGAGGGTAATGAAATCTATGAATAGAGAAGAAATTCGAGACGGAGATGAC20.13614703880190604No Hit
GGAATGTTGATGATGAAAAAGAATCATGTTTTCTTTCTTTTCTTCTGATT20.13614703880190604No Hit
AGACAATGATATGCAGAAAATTCTTTCGAAGTTTCCACAATTTGNACTNT20.13614703880190604No Hit
TTCTTTCACTATAAAACGGTCAACGCGTCAACGGTTAGAGACCGACGTAG20.13614703880190604No Hit
CCCTTAGCCCATCCTCTGTAGCTCAGCAGATGTTCGATTAGGGAGAATGA20.13614703880190604No Hit
GTCTTGTAGAAGCCTTCATTATCCTTGACACGAGAAGGAAGAGACGAGAG20.13614703880190604No Hit
GGAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAG20.13614703880190604No Hit
AGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCC20.13614703880190604No Hit
GTATTATAGTAATTGTATTTGTAAATAGACTTTGTATCTTAGATGATTGA20.13614703880190604No Hit
GATGCCTAAAGTTGTGCTTTTTTATTATCTGAATCAGGAATTAGAAATTT20.13614703880190604No Hit
ATCCCTACATAGCGGGTGGGACCCACGGCGAATGGTTCATCAAGTCTTCA20.13614703880190604No Hit
GTCATATGGAGGTGGCCTAAACTTTACACACAATGGGATGTGTTGTAAAC20.13614703880190604No Hit
GAAACGTACATGTAAAAGGTCGATCGTGTAGTCAACATTAGTCCTAATTT20.13614703880190604No Hit
GCTCAGCAATATCGGTGATACCGGAGATATCGAGCGTCTGGCGCAAGCGG20.13614703880190604No Hit
AGGTGAAAGACATCAACTGAATCCCTGGCTCTACATACTCAAACTGGAAA20.13614703880190604No Hit
TTCTGATATATGAGCTGAAATTTGGGTTAGAATTTGTGAGTCAGTGCCAA20.13614703880190604No Hit
ACATAATAATTGAACATCAATCATACTGTTTGTGAAAAAATCTTTAGTTT20.13614703880190604No Hit
CCGTCAGCGTCCGGAGACAACACCGCACTGACCGATCTATCGACCTCAGC20.13614703880190604No Hit
ACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTG20.13614703880190604No Hit
GTATGAGATTGAGCAACGATTGAGTGTTATACAACAAGGTTCTATGGATG20.13614703880190604No Hit
GTCTTAGTCTCATTCTATGGGGAGGTTTGGCCTTTCATCAGGCTTCACCC20.13614703880190604No Hit
CGTTAGTGGTATTTAATGGAAATTTGAATAGGCACCCAAAGTCTTTTAAA20.13614703880190604No Hit
AATTTAACTACCAGCCATGCATGCTGTAAAAGTGCTGACAAAGCTTTGCT20.13614703880190604No Hit
CCATGTACGAGGATCCCCACTAAGCATCCATGGCTGAATGGTTAAAGCGC20.13614703880190604No Hit
TGATCAGACAGTACTCCCCAAGATTCCGATTCAGAGTATGCTCCTATCCA20.13614703880190604No Hit
CTACTAAACACATTCTAAACCTAGGGATTTGAAAAGATGTGAACTGCCAA20.13614703880190604No Hit
CTATAATCCCTACCATAAGCTACTTCTCCTGGAGTGGAACTCTAAGCTTT20.13614703880190604No Hit
GTTATGATTCCCAATACAAGAGAAAATATAGGGACAAATATCCATATGAG20.13614703880190604No Hit
GAAGGTTGGTTAGTATTTTGGAGTCGAATATGGCTTGATGTCATGTGTAT20.13614703880190604No Hit
GTTTCTTTTCGAACAAGTCTGTCTCTTGACTTACTCTTCTCACTATGCAC20.13614703880190604No Hit
GTCATATTCGACTCCAAAACACTAACCCACCTTCTTCTTGCATCTCAATG20.13614703880190604No Hit
GTCCATACACTGATAAGGGATGTATGGANTCTCGAGAAGAGAGGAGCCAT20.13614703880190604No Hit
TATGTATGGAGATATGATCTAATGTCTGATATAAAATAAGTAGTCGGTTT20.13614703880190604No Hit
CTTTAAAACAATATTGGCCGTGTGACTCTTTGACCAGGATCACTCGTCAT20.13614703880190604No Hit
GTAGAGCCTATCAAACTAGTCCAGGTGATCGAGTGGATCCTCCATAGGGA20.13614703880190604No Hit
GTACTAAATTGGACAACGAACAACATCGTCATCTAGTACATTTGCATTTA20.13614703880190604No Hit
GATCAACCAAAAATTAGTACCTTGTTTAAATATCAGAGATACAATGTAAT20.13614703880190604No Hit
AAACTTTATATACATTTTATTCACATTTTGCGACGATTATAACATAGACA20.13614703880190604No Hit
ATGGATTGGTATTTGATTTTAATGCTTATGATTGCACTCGCCTGATTATA20.13614703880190604No Hit
AATTAATAGTATGTACTAATTCCTTTATTTTAATATAAGATGTAAAAAGA20.13614703880190604No Hit
CGCGCAACTCATCAGCAAACGCAACCTCCTTCCGATTTTCTCGCTCTTGT20.13614703880190604No Hit
CCTTCGATGTGCTGCACCGCGGCAAGGTGGTCGGCCGGGTCCAGTGGGCG20.13614703880190604No Hit
ACATTAACCAGAGAGAGCGTTTTACTAGGGAAAACGCTACTACACACGGC20.13614703880190604No Hit
GAATAGTATTGTCTGATTCATGCGGATAATAGAAAGTTCTTGTATTAAGT20.13614703880190604No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)