FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_024.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_024.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22.4096385542168677No Hit
GTTCTGAGATTAGTATAAATGTGAAACCTTTACTATAGCAAGATTGATTT11.2048192771084338No Hit
GTTGTGGGGTTGTAGGTATGATTAGTAGTCTTAATTATAAAGTTCTCGTT11.2048192771084338No Hit
TCTGTAGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCA11.2048192771084338No Hit
TGCTAATAGACTTGTATCAGTTTCTTCACTTGGTGTATGTGTGGATTTTG11.2048192771084338No Hit
GGTATGTTCTAGCGGGGTTCGTGTGATGGTCGAAGTGGGCGGTGCTCGGG11.2048192771084338No Hit
ATCTTCCAGGACCATTAAAGAAACTAGCTAGCTTCAATGCCTTCTGGTAC11.2048192771084338No Hit
CGTTTTCCAGGCCTGCCTTTCTGAGAGCTTACTAAAATTTTGGAAAATCT11.2048192771084338No Hit
CAATTCACATNAAAACTTCTAAATTAAAAAATGATTTAGAAACTTAAAGA11.2048192771084338No Hit
TCTAAGAGTATCGCCATATCGTGTAAATTCGGAATACTCAATCAACGTAT11.2048192771084338No Hit
GATTAAGATAACTCATGATATATACATTTAAATATTCAAGAACAACAAGA11.2048192771084338No Hit
GATATTACCCATCCACCAGGAGAGTTTATAAACAAATAAAGATCTTTGGT11.2048192771084338No Hit
AACACATACACCAAGACTCTTTTATGTAGGTTAGTTGCTTCCTCAAAGTA11.2048192771084338No Hit
GTGTATGATTGAGTATAAGAACTTAAACCGCAATCTTATCCTAAAAGCCT11.2048192771084338No Hit
GGTTAGTGTTTTGGAGTCGAATATGACTTGATGTCATGTGTATTATTGAG11.2048192771084338No Hit
CGTGACTCAGCCATGGCACAGCGGTTGCGTGTTACGCTGGCTGGCTGCCG11.2048192771084338No Hit
ATTCAAATGAGTAAGTGTTTTTTCAATTTCAACCATTCCTTACAATTCAA11.2048192771084338No Hit
ATTTAAATATAAATTCTAGTAAAATCATCTAGAATAGGGCAATGATTGAA11.2048192771084338No Hit
CTCAAACGTAAATAAACCGATAGATAAAATTTGTCTATATAGACGTTTCA11.2048192771084338No Hit
ATATAATTTTGCTCTAATTATTCAAGATGAAAAATATACTTAATAGTACA11.2048192771084338No Hit
TCAATAATAAAAATTACAAAAAATTACAACAATAACATCACTCAAAACAA11.2048192771084338No Hit
ATTTTGGGACAATGAAGCCTATGGGTACCATGGGCACAGAGTACGTCAGT11.2048192771084338No Hit
ATAAAAAACTATCCCAAGCGCGAATAAATTCATAAATATTATTCCATCCG11.2048192771084338No Hit
ACTATGGCGGGGTCCGCTTTTGGTATCCGTTTTTCCTGCGCGGTGGGATT11.2048192771084338No Hit
TATTTCAATTTCTTCACAGTTTAGTTTTGAGTGTTATATAATAATAGGAG11.2048192771084338No Hit
TCTATCAAGAACTCCATCAGTTTTGATGTTACCAAACCTCAACTGGTAAC11.2048192771084338No Hit
TAAAATATCTAGGTTAAGAGATAATTGAGCATGCCATGATGTTGTAAGAA11.2048192771084338No Hit
GAATCATTGAGCGTGGGCGCCTATCCCAAGTCCCAAATATAACATCTTCT11.2048192771084338No Hit
AATGGGATGTGGGGGGCGGGTCCGCCTGGTGAGTTGTCGTTAGTAAGGTT11.2048192771084338No Hit
AGCGTGTAGAGTAGAATGCAGTAGGTAGGGGTGTGTGTTTGTAGTGTGTT11.2048192771084338No Hit
AAAAAAAGCTATACTTAATAAAGAACGTGTTTATATTAATGTCAAACCAA11.2048192771084338No Hit
GTGGTTACTTTTAATAACTTAAAAAATAAAATAAACAATAAAATTAAAAA11.2048192771084338No Hit
GACCTATCTCCTCCNCGGATTCACCCTGAAAAAGGACATCCATGACTCCC11.2048192771084338No Hit
GCCGAACATCAATCCCAGCATCTCCAGAACCTGGTTTATGAAGATCAAGG11.2048192771084338No Hit
GTTTGTTACGAAAATCGTTATTCTCATTAATGAATCTGGACTGCATACAT11.2048192771084338No Hit
CATCTATATCGTAAATAACCAACCTCATACTTTGTTAGTAACAATTGAGA11.2048192771084338No Hit
ATTTACGTACTTAGCTTGACTAGTTGTCGTTCATTACAACCATCTTAGGT11.2048192771084338No Hit
AAAAAAAAATACTATATACTAAAAAATAAAAAACAAGAAAAAACAAAACA11.2048192771084338No Hit
AGCCTGCAGTCAGTCGAGCTTACAGGTGTCACATATAGCAGACTTCTTTC11.2048192771084338No Hit
GCTTTCATGGTGTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTC11.2048192771084338No Hit
AAATATATGAGTAAGAGATATATTAGGAGTGTTTCGACAACACTTATAAC11.2048192771084338No Hit
ATCCTGAAGCCTTAAGCCGAGGAGACGCTAGCTGGCTCAGAGGCGAAGCA11.2048192771084338No Hit
TTTCCAGGGTTCGTGCTCGGGGCTGTGGGAAGAGGCACGTATTCCACTTC11.2048192771084338No Hit
CAAAATATACATCCATTAAAAAATCAAGAAAGAAGTTAAAATTTCAAACC11.2048192771084338No Hit
CAACTAAATTCAATTAATACAAAATATAAATTAGTATAACATAAAAAAAT11.2048192771084338No Hit
GGGGGGGGGGGGGGGCGTTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGTG11.2048192771084338No Hit
ATATATTACTAATAAAAATATTTAATTGAATAAAATTAAATTATTTTCTT11.2048192771084338No Hit
TCAATGTAAGGAAACCCCATCAAGTATTAACTATCTTAGAAGAAACAAAA11.2048192771084338No Hit
AAGGTGTGTTGTTGAAGTGAATCTCTTTTGTAAGCGGGTGCTCGGGCTGC11.2048192771084338No Hit
ATTGGATGATGCATGAATTCCGCCTCCCCTCCACCACGAAAACCGACTCT11.2048192771084338No Hit
AAATTAAGTTTATGAACAATTAAAGAATTCTATTTATGTACATATTTATA11.2048192771084338No Hit
CTTGTCATTCAGCGCTTTGATATCCTACATGTGTTTGTCATCAGAGTCAG11.2048192771084338No Hit
AAAAATTCACTTATAAAATATAAGAAAAAAAAAAAAATATACAAACAAAA11.2048192771084338No Hit
GGTTGGGGAGAGAGGATTGCAGCTGTCAGGTGGGCAGAAGCAAAGAATAG11.2048192771084338No Hit
AAAAATCACAAATATTATATATAACATCAAAAAATCACACACTACATAGG11.2048192771084338No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGAGGGGGTGGGGGGGGGGG11.2048192771084338No Hit
AGTAAATATTCTTGCATTTATTGCTACTGCACTCTTCATTCTCGTTCCTA11.2048192771084338No Hit
ATATAATATATATTAATATATATATAAGGCATCCTCCGGATAATTCAAAT11.2048192771084338No Hit
ACAGAGAACAGTTCCTCTGGAAATGTCTACCGACAAAGAACACATTCAAG11.2048192771084338No Hit
GAAAAAGCTACGCCGAAATCGAAGTCTATCTAGCAATAACATGCAAGACA11.2048192771084338No Hit
GTTTTATTCGTCTTTTCAAAGTTGGAGCAGAGTTGTTATTTTTAGCCAAA11.2048192771084338No Hit
GTATATCAATTATAAAAAAAACTTAAACATCAAAAATATAATTAAATCAT11.2048192771084338No Hit
CCTTTATTCGACGCGTGATTTTGTTTCCCATAATTACACCCACCAATTGC11.2048192771084338No Hit
ACATAAAAGTTCTCGACTCTATATCATTCATCAACGTCCCCAACAACCTC11.2048192771084338No Hit
ATCCCCCACCGTCTCACTTGCCGACCTTGACCCCAGTTATTTTGAGGTCA11.2048192771084338No Hit
AATCTAAATTAAAAAAAAAATAAAATAAACAAATAAAAACATAAAAGATA11.2048192771084338No Hit
CCATTCCATTTGTAGTGACTGTACGAACTATTATTCACACTAAATCCAAC11.2048192771084338No Hit
ATTGTATCCTTGTTAGAAGACACAACGCCAAAGACTCATATGGACTTTGG11.2048192771084338No Hit
CAATAAATAAAAAGAAAAAAAACAATAAAACAAACAATCATTTCGCCGAA11.2048192771084338No Hit
ATATGTAGGTTAGATGATTATTTTTTTTTAAAAAAATCACAAAACAATCA11.2048192771084338No Hit
GAATTTGCACTACTAACATAAAAAAAGTATACAAAAAAAACGCTTAAAAA11.2048192771084338No Hit
CTAAATGACCTGACCAAGCCAATGAGCTTACCCCGAATAGTCCTGACAAA11.2048192771084338No Hit
GGCCAACTTGATCNTCTTCCCCAGGGATCAATCCCAGACGAGGGAACCCT11.2048192771084338No Hit
CCATAAGATAATTGAAACATCGATGATGTAATTCGAAAAGTACTGTCATT11.2048192771084338No Hit
GAAGAAGATGATTCACCTTACTTCTCTAGATCTACTCCACCGGGCTTCAA11.2048192771084338No Hit
ACTAAGGACTATTCGCTTTNTGAGTTAGGATTCAGTTGTTGAACATGTTT11.2048192771084338No Hit
AAAATATAGTCATTAAAAAAAATCCAAAAAAACATAATCAAAGGAACTAT11.2048192771084338No Hit
GAACAAAGCGTACATTCTCTTGTTCTCCTAAAAAAGGACGAGTCTCGACA11.2048192771084338No Hit
ATATTTTATTCTACCACAGGGCATTTTTTGACTCTTCTATTTCAAAATCT11.2048192771084338No Hit
CGCCAGAAGAGNTGCAAGACGTGGTCTGGTCGAACAGATTACGACCTGTC11.2048192771084338No Hit
ATAAAAAAAGTATAATAAAAAAACGAAAACTATATAAGAGAGTCACCACA11.2048192771084338No Hit
TTCTGTATGTCAGGATAGGTTAGAATTGGAATTCTAAAGTCTGTAGGGTT11.2048192771084338No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)