FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_021.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_021.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCTCTTTTTGTCTAACTCACTTCCTTTTTTCTTTGTGAGTGTCGAGCA11.36986301369863No Hit
ATGGATCTCGGCGCGGCCGTTGTGTGGTCCCCCGGTGGATGTTCGGGGAC11.36986301369863No Hit
CTTTTTTAATCTTCACGACCAGGAAGACCTCCAACATCAGAATGTAGGAC11.36986301369863No Hit
TTTCTCGTGTATTGGGAATCAGAACAGGTGTCCTCGGAATTGGGTGGGTA11.36986301369863No Hit
GTACTGACCTCAGCTTACAACTCACAAACAGAGACGTCGCTCACGCCCTA11.36986301369863No Hit
CTTAAAACTCTTATATCTACTATCATGTTTTAGCTACATAGCATAGATTG11.36986301369863No Hit
TCTTTCAGTTGTGCAAGCGGTTGGTTTATCAAGTGATGCTTTGAATCAGC11.36986301369863No Hit
AATAAATTGAAGACTTTACCTCTCTTTCACCAAGAGGTTTAAGAAATGAT11.36986301369863No Hit
TCGTAGTGTTATGAAATTGCAGTGATTATACTCCATAAGTAAATACCGGC11.36986301369863No Hit
CTTTTCGGAGCTGCTAAGGTCCCCTCCACAGACGTGATAAACTAATTGGG11.36986301369863No Hit
GCCATGCTCATGTTCCTTGGATGATCCACAGCTCAGGTTCAGCCGCTGAT11.36986301369863No Hit
AGTATATGAGTCGCCGGGAGGCCGCAAGATGATTGTGTCAGGTTGATTTT11.36986301369863No Hit
GATAGGGATTAGCCTTTATCGATTAGTGATAGGGTTAATTTGATAAAAAT11.36986301369863No Hit
ATAATAACGTATGTAAAAATCATTTTGCTAATCCAAAGCACAGGAAAAAA11.36986301369863No Hit
ATAAAATATTGGGCCGCTTGAACAACTCCTAAAACTGCAGCAGCCACCAC11.36986301369863No Hit
ATCTAATCTTTAGTTTATTTTCTAGTCCCAAACGAATAAAGGATCAAAGC11.36986301369863No Hit
TCAAAAAGAGTGAAAAACATATAAAAATTTGTCATGAGAAAAATTCAGGA11.36986301369863No Hit
GCAGTTAGCTCCCCACAAGCCGAGACGAAAGCTATTGTTGGGTTCAATGG11.36986301369863No Hit
TTCTTAACCGTGCACTTTGTGATATGGCACCCACTTCTTCAAAGGCAATT11.36986301369863No Hit
GTCCTGCCGCATTAACAATAGAGTCGTCCAGTCCTCATAAAAGGATTCAG11.36986301369863No Hit
CTACAATGACTCTGTTGTAGCTAGCGGGTTACTGATTTATTCTGATGACA11.36986301369863No Hit
GTATACTTAATTATCAAATAATATTATTAGTTTGATCTCGTAACCAGCCG11.36986301369863No Hit
CTTAGCAAATTCTTTCTCAAACTCTGAAAGATAGCCAAAAAAAAAAGTAC11.36986301369863No Hit
ATCATACACAGGACCTCAAGTCAGATGCGTCTCCACATCATTAACCAACC11.36986301369863No Hit
AAATAACTCCAACAACAAAAGCACCAAAATAAATTGGAGTACAAGAAGGC11.36986301369863No Hit
ATTAACAACAAAACTAAATCTAATCCATAAGTAAAACGTCAGTTGTCGTG11.36986301369863No Hit
TGTTGTTTTACTTTTAGTTTTATTAATTTAATATTTTTTTTTTATTTTGT11.36986301369863No Hit
AGAGGAGTGTGGTGAGGGCTTTTTCGGAATGGAGAGACTCAACAGACGCC11.36986301369863No Hit
TAACTTCATAAGATTAATATACTACTTCACTATGATTATGAAGATAGGCA11.36986301369863No Hit
GATATATGAGTTTGGTGTTGATCGCTTCTCATTTTTGACTATGCAAATTC11.36986301369863No Hit
CCCTAATGCTAATCATAGCCACAGTGAGGGAAGTGGGCAATAAAATCATC11.36986301369863No Hit
TCCCGAGATACCCACGTCGGGTATGTTACAATTGACGAAAGTGCATTTAA11.36986301369863No Hit
CAAGTCTCCACCACCACCATATGTCTACATGACGCCTGCGTATTGCTTTG11.36986301369863No Hit
GCATTCATTTATAGCACAAAGACATTGGCGTGGATAAAGAGCGTGGGTTT11.36986301369863No Hit
TTCCTTGTCTCTCTCTTTGACACTTCTCTCCAATGCCTAAAGAGAGCGCG11.36986301369863No Hit
ATACGGACTAGCGTCTACCACGCCTCCTTGTTCGATCCGGATCAACCCCA11.36986301369863No Hit
TTCTTATGCTGCTCGATTGCGGAGAGTCATTCTCTTACTCATTGCTTCAT11.36986301369863No Hit
CTAATAAATCGACTAATAAAACTAATGTTTCTATAATCAAGTCGATCCCC11.36986301369863No Hit
TTTTATCAAAGACTTGAAATAGAATAACGATACAGAATATAAGGAAAAGA11.36986301369863No Hit
GTAGTTTTTCCTTGTTAGAAGACACAAAGTCAAAGACTCATATGGAATTT11.36986301369863No Hit
TCGTTGTGTGGGGGGGTGGGGGGGGGCAGTGGGGGACCGGTCGGGTAGGG11.36986301369863No Hit
AAATTTGCCTTGCTATTTCTACTGTTGGAACTGAATTAATAATGTCTGGA11.36986301369863No Hit
ATACTCATCAAATAACATTATTAAAACCTCAAAAAAATCCCAATTTAATT11.36986301369863No Hit
TACCTACGCTCACTATATGCACATTGTCACATCAAAATCAACCCGTCAAT11.36986301369863No Hit
ACGTCCCAGAACCCGAGAACGACATGAAGCCCATACGACCGGGCGTTGGC11.36986301369863No Hit
GGAGCAGGGAATGAAGATCTCTACCTTCTCTCAAGAAGCAGCTGAAGCAT11.36986301369863No Hit
ACGTATTGTCAAACTCTTTCAGATATGAATCTATCCGATTCAGAAGAGAA11.36986301369863No Hit
CTTTATAGAAACAACAAGGGCTTCAAATGCTGCCCGACCCCATGGATACG11.36986301369863No Hit
GAATAAACAAACAAAAGCAGTTTATTAGTCATCGAGTACATAGCTTCGAG11.36986301369863No Hit
GTCTTAACGAGCTTTGATGCATGAAAAATAGGCGAAACCTCTGCTTGAAA11.36986301369863No Hit
ACTCACTCAAGACATAGAACTATAAAAAATCCAATATAACATAATATTAT11.36986301369863No Hit
GATTAGGGTGAGGGTGGACTGATTTCTCGTGTATGGTCGTGGTGGCTGGG11.36986301369863No Hit
CTGACATATATATCGATACAGGTTAGTCCAGATTTATATGGCGANAACAA11.36986301369863No Hit
ATATAGAACAGCATATAAGTTATCAAGCTCGCATATCCACCAGGTGAGTC11.36986301369863No Hit
AGTGTCGGGAGCGCTAGTTGTCTTGCGGATACTATCTGCAACCTACGGGT11.36986301369863No Hit
GTGTTGGGGGTGCTGGTGGTGCTGGTGGTGGTGGAGGGGGGACGTGAGTG11.36986301369863No Hit
CATGAACATCAATAAAAACCTTATGTACAATCCTACATGGGCAAATTCTA11.36986301369863No Hit
ACGATGAGTGTTACAAATGTGTGAAATGCGATTCAGAGCTGCACCAACTA11.36986301369863No Hit
TTCAAATAGTGATGAAATGTGTTTTCACGATTTTATCTACAAAGTCAAAT11.36986301369863No Hit
ACCCTAAACCTTGAAAAAGGGGTTGTGGGATAGCAAAAAAAGCGTAGAGC11.36986301369863No Hit
GTATATTGTAGACTCTCGCTCAATTCTGCGTATTGGGTTCTGGGTACGGG11.36986301369863No Hit
TATCACATTTTGATTCGACTAGTAATAAAGGGTTGAGTTAGTTATTTTTA11.36986301369863No Hit
AATAACGATCTCACCTTTCGACCCCGCTACCTGGAAGTTCCACCCAAGAT11.36986301369863No Hit
CACTCAGTAGACCAGGGCAGATGAGATGCCGACTCACGAGGCTGAGGACC11.36986301369863No Hit
GAATCAATACAACGATATATGATTATATAAACATAATCAACAATTAAAAA11.36986301369863No Hit
CCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGTC11.36986301369863No Hit
GTATATATTGAGTATGACAACCGGACATCTTAGGAGAGAGTCCCGTGGTG11.36986301369863No Hit
ATTCGTAAGGCATCAATTAGCTTAATTTGTTGTCCAAACAATTTATATTT11.36986301369863No Hit
ACCTAGCTCGTGTCGGGTCCTGCATGGGTCCGCTCTGCGCGAACGCCGAA11.36986301369863No Hit
GTCCATATGAGTCTTTGGCTTTGTGTCTTTTAACAAGGATACAATTCTTA11.36986301369863No Hit
GCTTTATATCACTATTCCCGCTTGGCACCAACATACATAGAAATGTCTGA11.36986301369863No Hit
TGCTTTATGACGCTTTGTGTCCGTCAGGATCAACAGGGGCGCGGCTGTCT11.36986301369863No Hit
TATAATCTAAGTATCACATTTCAAAGAATTAGTAAAAGAACATAAAAACC11.36986301369863No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)