FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_019.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_019.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTACCACAGAGGCCTGTAGATAAAAGACAGCAAGAACCGTGGAGTGCTT23.225806451612903No Hit
TGTCTTTATGACTTAGCTTAGTATCGATTTCATTTTGTTGTTTTGACTTG23.225806451612903No Hit
GTATGATTGAGTATAAGAACTTAAACCGCAACCGAATCTTATAAGCCCTG11.6129032258064515No Hit
CCCCATTCATTAGATAGAGAAGATCGCCAATATTTCGCGATCCGCTGCCG11.6129032258064515No Hit
CGGTTTAAGTTCTTATACTCAATTATACACATGACATCAAGTCATATTCG11.6129032258064515No Hit
CATCAAGGGACTTATCCACAGAATGTCCTCTAGATGACTTATAAGTAGCC11.6129032258064515No Hit
GAATATCATTGGGAGTGCACTTAAGCCAATTGGAGTACTAGGCCTTCTGT11.6129032258064515No Hit
GTGGGAGGCTCTTCAAGAAATATCAACGANTCAGCATTTGCTTAAGTTAA11.6129032258064515No Hit
AACGTACACAGGAGTGTATCCATGGATGATGAAAGTTGTAGAATCTGTGA11.6129032258064515No Hit
GCCTGATGCTGCTGCGCTGCTTGTTGACCATTGTAAAGCTGATTCTGTGG11.6129032258064515No Hit
GATATAATAGATATATATCTAAATTCAAATAAAAAAGAAGGTCACTCCAC11.6129032258064515No Hit
GGTACTCGCGGAGGTTGCCACGCTGCCGCAGAACAGCAGCTGTTATTTCG11.6129032258064515No Hit
CTCTAGAATTACTACGGTTATCCGAGTAGTAGTTACCATCAAACAAACTA11.6129032258064515No Hit
GTATATGAGCCTCTTCAAACAGGACTTATTGCTATTGATTCCATGATCCC11.6129032258064515No Hit
GTATTACGCTGTAATCGATTTAGTAAGTTTCTTACCCAAGTAACAAGATT11.6129032258064515No Hit
GTTAAGCGTGCTTGGGCGAGATCAGAAAAACGAATGTAGCACACCAGGGA11.6129032258064515No Hit
GGTTTATAAGAAGAGAGTTATTCACCAAAAAGATCTGTGGTGAGGAAAAT11.6129032258064515No Hit
GTACATTCATCTTCTTTCTGTTTTTTGCAATGTTTTGCTGGTTTCCTGGC11.6129032258064515No Hit
CTTATGTATACTTTCCCCGGTTCCGTTGCTACTGCGGGCTTTACGCAATT11.6129032258064515No Hit
CGGTTTAAGTTCTTATACTCAATCATACACATGACATCAAGTCATATTCG11.6129032258064515No Hit
ATCTTAAAAGCCTAAGTAGTGTATCCTTGTTAGAAGACACAAAGTCAAAG11.6129032258064515No Hit
CGTCTTTAATTAGGTTTTGTCTTCCAATCAGACTTCTTTGCACTGACGCG11.6129032258064515No Hit
CCTTCTTCTTGCTTCTCAAAGCTTTCATGGTNTAGCCAAAGTCCATATGA11.6129032258064515No Hit
AATATATACACATATATAATGATGCTATACTTGTTGACATCGAATGAATA11.6129032258064515No Hit
CAGAGTAACAGAGCTCGGATTCATGCATCATAGACTAGGTTTCGGTTACA11.6129032258064515No Hit
GAACAGATAGCCGACATCTTCACTAAATCTCTTCCAGTTGGTATCTTCAC11.6129032258064515No Hit
GTCGCATATATTATCAATCGGATAATTAGCTTTCTTTGGAGGCCGATTCT11.6129032258064515No Hit
GTATAGGAGTCATTTGGTCAGTAAAAGTTCCAAGAACAGTGACACCAGAT11.6129032258064515No Hit
ATACTAACGAAAACAAGTAATTTTGATTTTTGTAAGTAAGTTTTAAAAGG11.6129032258064515No Hit
GATGTCATGTGTATGATTGAGTATAAGAACTTAAACCGCAACCGGATCTT11.6129032258064515No Hit
CATGACAGCCTTTAGCACTACAAAAAAAAAAAATAAACCATCAAAGCTGT11.6129032258064515No Hit
ACCTTCTTATTTGCCAATTCATTTGTATAGTGATTATTCTCATCACTATG11.6129032258064515No Hit
AAATTTAACCGATTCTTTCGTTTACTTGGGTCACTGGCCATCCGCCGGGA11.6129032258064515No Hit
TAGTTATAGTGAGCAAATTATTTCCAGATCAGCTCAGATTTAAAAAATGG11.6129032258064515No Hit
GTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAAC11.6129032258064515No Hit
TTATTCAGGAATACACATTGAATGCGAAGATTACGCATTTCATTTCTGGT11.6129032258064515No Hit
GGGATGTTGGGGGTGGGGGGGGCGTGGGGGTTGTGTGGGGGGTGTGCGGG11.6129032258064515No Hit
GTGAAATTCTCAAGCTTCGGAAGTTGACGCCGGAATCTTCCCAGATAACA11.6129032258064515No Hit
CTTTGATTCTTTCTTCAAAACCGCTCTCCAACATCCACTCAAATAGTTCT11.6129032258064515No Hit
GCGTTATCCGGACTAGATAGGACTAGGTGGGTACTTGTTCTATGGGTTGG11.6129032258064515No Hit
TATATACATAGTTTCCTAAACGTCCAAAGTAGATCAATCATTTTTCAAAC11.6129032258064515No Hit
GTGTGTGACTATTGAAATGAGATTCTCAAGTTCTTAGGTTATATCGTTTG11.6129032258064515No Hit
AGTTAAGCATATATATAAGAGGGGCTCGCTTACTCAGGATCATTAATAAC11.6129032258064515No Hit
GAACTTAAACCGCAACCCGATCTTATAAGCCTAAGTAGTGTTTCCTTGTT11.6129032258064515No Hit
TGGTAAGATTTAGTAATTAGTTGGTAGGGTTTCGAGTGATATCGAAAGTG11.6129032258064515No Hit
GACCTCGTCCTTTCTCTCTTTCCATTGCGTTTGAGCGGATGTGGCGGGGA11.6129032258064515No Hit
GCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAACCCAATAACG11.6129032258064515No Hit
CTTTGGGTAATCCGAATCTCATCTGAAATATCCGACTAGAATCCGATCTA11.6129032258064515No Hit
CTCTTACCTATCCTTCTCCCACAACTGCAGATACTTGCTGAGGCTAAAAG11.6129032258064515No Hit
GTATGGGTTCTAGCTAGTGGGGGTTTTGCATTGGCCATTAGTACAATCAA11.6129032258064515No Hit
ATCTCGGAATTTTGTGCTTATAACCAGCGGTCAACAGGCTGAATCAAGGA11.6129032258064515No Hit
CCGGGGGGGAGGTTGGCGGGTGGGGGTGGGGGCGGGGGGGGGGGGGGGGG11.6129032258064515No Hit
GGAATATGGAAAGGGGCCCTGAATGTAGAATTCTCACCAATGATGCGTGA11.6129032258064515No Hit
CTTTTAAATTTCTCCATCTTCCTCGTTTTCTTTGTTTTGTTTTTTGCAGT11.6129032258064515No Hit
GAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTCCGAGATGTTAAT11.6129032258064515No Hit
CAATTACAATGAATAATGATAAGTCGTCTCTTGAATCGCCAAATATATAT11.6129032258064515No Hit
GGAGGGACCCGGTCGGTGGGGGCCGCGGGCGGGTGGGGGGCGGGGGGGGG11.6129032258064515No Hit
TTTGCATATCTGGGACACCTGATCAAATCCAAGCAGCTGAACACCGTCTT11.6129032258064515No Hit
CAAATATGTTGCAATGTAAGTAGCAAATGTTTGTATGCTAGGAAAATTTA11.6129032258064515No Hit
GGTGTGGTATTAATCATAACGCTAATCTTGTTCCTAATAACGTCGTCTAT11.6129032258064515No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)