FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_015.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_015.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1585
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGAAGCGACTCGCTTCTATTCCCCGTTGGGATTGGATATAGATGGGG30.1892744479495268No Hit
GTCTTCTTGCTTCTCAAAGCTTTCAGGTTGTGGCCAAAGTCCATATGAGT30.1892744479495268No Hit
CCATTCGAATAACTATAAAGATCATATCTTAGTGTGATTAGTGTTTCCAT30.1892744479495268No Hit
CTCTATTACAAATTCTTTGTGTATTTTGGTGTTTCTAACCATCCACTCAC30.1892744479495268No Hit
ACTGTACAAAGATTTTAAATATAGTTTTCACAAAATCATAAATCATTGTA30.1892744479495268No Hit
TTGCTATTTCGTTTTTATTTTATATATTTGATTAAAAATACGCTTCACTT30.1892744479495268No Hit
GCTATAAATGTGTTGATTAAAGATCTTATCTGCATATGGCAAAGTCCAGG30.1892744479495268No Hit
TTCCAGGATCACTTTTTGAGCTCGCAACGTTGAGTTTGATTCCTCCCACC30.1892744479495268No Hit
ACTTGTGGATTGACGGTCAAATACTAACTAGCTTGTTATAAGATGTAGGT30.1892744479495268No Hit
GGTTCCATGTCGCGGGTAACTTTCTTTGCAAGGCATTCAATTAAAATCTG30.1892744479495268No Hit
CGGTGGACCGTCGTCGTCTAGACATCTCTGGTCCGGCAATGGTGACTGGC30.1892744479495268No Hit
GCTTCTGAGTTCAATAGAGTGAACAAATAACCATAACATACGACACCAAA30.1892744479495268No Hit
CTATTAATGCAAATATTGGGATGTTTGGTACGATGAAAGAAATAACTGAT20.12618296529968456No Hit
CTATTATAGATGAGACGGGTTAATAGGTGTGTAATAAGACTCGGCATGTT20.12618296529968456No Hit
GGAAACTAGTGTCTCTGTTTCAGAAATTTTCTTACTATCACATAAATTTT20.12618296529968456No Hit
CTTAAGGGGTTTCGACATCGATCATACTAACCAGATTATTGTTAAAACAG20.12618296529968456No Hit
CAATAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTCGAGTCG20.12618296529968456No Hit
CATGAGTCATGACACAACACACCAAAACTCAGTATTTCAAAAACACAAAA20.12618296529968456No Hit
CTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAA20.12618296529968456No Hit
TCCGAGTAGTAGTTACCATCAAACAAACTATAACTGATTTAATGAGCCAT20.12618296529968456No Hit
GTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAG20.12618296529968456No Hit
ATTCATTTTCTGGATTATAATAACCGACTTTTGTGAGGGTTGTAGTTGAT20.12618296529968456No Hit
CTATCGACCCATTTATGAAGGCTCACTTGATTTGGGTACGGGCATTACTT20.12618296529968456No Hit
ATTATGAGGATCAACAAATAGCGGAAAACAAATTACTGTATACACATTGC20.12618296529968456No Hit
ATCTTAAAGGCGTAAGAATTGTATCCTTGTTAGAAGACACAAAGCCAAAG20.12618296529968456No Hit
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT20.12618296529968456No Hit
TTATAGAGCTGTGCTTGAGGTTTATGTTTCTTTTCATGAGAATGATGAGT20.12618296529968456No Hit
CCAGCTCTTGATTCTCAGTTGCCGAAGTCTTTACTCTCTGAGCTGCATTT20.12618296529968456No Hit
GTAACTAATTACTAACTTTGTTACTAACCAAAATGAAAGTCTATTTCAAT20.12618296529968456No Hit
GTATTTAAATTTCAAAAAGAAGTAAATGTTTCATAAGGAAACCAAGTAAA20.12618296529968456No Hit
CACTACAGCTANTCCACATGGAAAACCTCCTCTGGACATGCCATTGAAGA20.12618296529968456No Hit
GAATTAATGTACGAGTATATAATTAGTGAGACGACTTACAAGGAATCTTA20.12618296529968456No Hit
AAAGTATATTGATTTTTCCCCAATAACCGAATACTTTTGTCTGTAAATAC20.12618296529968456No Hit
GAAGTCATATGTTTTTGGTTTTTGTTCGGATTATTAGGATATACTCACAA20.12618296529968456No Hit
CTCTAAGGAAGAATCATCGCATACAGGTATTGTTCATTTGCCATAGTTAA20.12618296529968456No Hit
CTAAAGAGGAATGATGGAGAGCAAGAAAAGTCCTGTGCTGACTCTGTGTT20.12618296529968456No Hit
AATCAACGGATTCATGATAAAATCCCTTTATTTATTAAAAATTTTTAGTG20.12618296529968456No Hit
GTTTTGAAGTCGAATATGACTTGATGTCATGTGTATCATTGAGTATATGA20.12618296529968456No Hit
TTGCTGCAGTTGTCTCTGATTTGAAAAGCAGAGCTGTTATGATTAGCACC20.12618296529968456No Hit
ATTTAAAATCTTTGTACAGTAGTTTTTTTAAGTATCTGATAGGTTCCCTA20.12618296529968456No Hit
ATTTACTGCTTCTAAGCAAATTTTTGTTGGTTTTAGCCTCTTTTGAGAGA20.12618296529968456No Hit
GAAGTAATCTGTTGTTGAACTTATTGTCTAGGGATGGCTTCTGTGAAGTT20.12618296529968456No Hit
TCTGTACTCCTGATTATATCTCCGATCGCTGTAGAACATTTTTGTCTTTT20.12618296529968456No Hit
CATGTTCTCCTTGTGATGATATATGAGGCAGAGAAATTTTTTAATTTTTC20.12618296529968456No Hit
AGTCAAAACCTTGTTTAGGGAGCTATGGATGTTGTGATGAATCGTGGATA20.12618296529968456No Hit
GTCATGTGTATGATTGAGTATAAAAACATAAACTGCAATCTTATCCTAAG20.12618296529968456No Hit
GTATCTGTGGCTACTGCTGTTTTACCGGTCTGTCTGTCACCAATAATTAA20.12618296529968456No Hit
ATATAAAAGAAAAAAATAGAGATTTCTAAAAAGATTTAGAGGTCAAAATA20.12618296529968456No Hit
GATAATAACAGAGCTGCTAAATGTCTTCAGATTTTATCACTCCCACATAC20.12618296529968456No Hit
GTCTCCTACGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGA20.12618296529968456No Hit
GATTTAGTGTATTGATATATAAAAATGTATTTATTTTAATTTTTATTGCA20.12618296529968456No Hit
ATGATTTTGTGAAAACTATATTTAAAATCTTTGTACAGTAGTTTTTTTAA20.12618296529968456No Hit
TATATATTCATGTGCTAATTGGTATTGTTTTTTATCTAAAACTATTTCCA20.12618296529968456No Hit
CATCCATATAATATACAAAAAGAAACTCCAGATATTTGATATCTTTCTCT20.12618296529968456No Hit
ATTGAGAGTAAATCAGAAGTCAACGTTCGTGTATTAATTTTTAACATTTC20.12618296529968456No Hit
AATCTATTGACTGCTTCTAAGCAAGTTTTGTTGTTTTTAAACTCTTTTGG20.12618296529968456No Hit
ATTTAATACATAAGTTGAATAAGCTAAAATAAAATATAAAATAAAAGTAA20.12618296529968456No Hit
ATTTAACNTTTGATAGAGTTATAATATTTATAATTTCTTGAAACATTTTA20.12618296529968456No Hit
GGTCAAAATGTGTCACATTCCAATGTACTTGACTAATTATAAGAGTTAGG20.12618296529968456No Hit
GAATAATGTGATTCATACCGAGATCAATTTAGCTCCAAGCCAGATTCGTT20.12618296529968456No Hit
GATTTACGAGAGTATGCCTGGATTGAGAGAAATTTATGGATTTAGAAGAG20.12618296529968456No Hit
ATATATGTTCCGAGAGGATCCTCTAACGCTAAAGTTAGATTGATCTCTCG20.12618296529968456No Hit
TGCTAGTCCTGCGTTGAGGTTATTTGTCAACACGGCTTCTGACTTTTGAC20.12618296529968456No Hit
TTCCACTCCTGGTCGACAAATTTTCGGACCCGGTAAACCTGTCTCTTATA20.12618296529968456No Hit
ACACTGAATCGACCAGAGCTTACTTCACTACTCTTCCTCTCTGTCTCCAT20.12618296529968456No Hit
AGCCCGAAGATTGGCATTCTATTGCTGTAATTTTATATGTATATGGTTAC20.12618296529968456No Hit
GTATATGATATGAATGTTTACCATACCACACAACATACGATGGAAAAATG20.12618296529968456No Hit
GTACTGGTACATAGGGGAATTATATCAAGAGGGATAGAAACGTCTGTGAT20.12618296529968456No Hit
GTTTTATAGTTATAGTATGTTCGAACGTGGAATTCATCATCCTTATTAAT20.12618296529968456No Hit
GTTACAGACAGAGTTCGAAAAGATCAAATCTTTGATGATTCCATCATACA20.12618296529968456No Hit
CTAGAAGACAAGAGACTTGAGGCGGTTTGGGCAAATACTCGATCTTGGGG20.12618296529968456No Hit
AAAATTGGTGTTCTTGTGGATAATTTAATTTTGATTGAGTTTTTAATATA20.12618296529968456No Hit
TTGTTGAGAATGTTATTAGAAAAAAATATTTTTAATTCTAAAAGTAATTA20.12618296529968456No Hit
GTTCCATGAAAAGACCTTGTAGAACCAAAATTAGTATTAAAACCTCCAAA20.12618296529968456No Hit
GTCATTACATAGGACTCCCACCTGTTATCATAGTTTTCTGTCGTTGTTAA20.12618296529968456No Hit
TCTTTGTATTTTATGTTTTTAGTCATTATAGCTTTTTTTTTATTGAATAA20.12618296529968456No Hit
GGAGGAAACAAACACTGATGATTCGAATTTTCTTCCGTCTCCGATGAACA20.12618296529968456No Hit
GGACATCATTGGACTCTCTGGCCAGACTCTCCTTCGTGCGCTCACTCACA20.12618296529968456No Hit
CTTAAAAGCCTAAGTAGTGTTTCCTTGTTAGAAGACACAAAGCCAAAGAC20.12618296529968456No Hit
AGACAAGAGACACTCAAAGTGATCGGGAAAAGTATGCAGGCCCTCTAGTG20.12618296529968456No Hit
CCGTAAAGATCAAGTGGAAAGGTTTTGGACCGACACAACAAGAGCTGTTT20.12618296529968456No Hit
GTGTAGGATAAGTGGGAGCTTCGGCGCAAGTGAAATACCACTACTTTTAA20.12618296529968456No Hit
TACTTAGGCTTTTAAGATCGTGTTGCGGTTTAAGTTGTTATACTCCTGTC20.12618296529968456No Hit
ATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCT20.12618296529968456No Hit
TTTCTATGGTTTCTTCTGCTGCTTCGTCCCCAGAAGCCGACTTTGTTAAG20.12618296529968456No Hit
CCTTTGTTACTTTATTTAGAACTTGATTGTTCTTTATGTTAATTTATATT20.12618296529968456No Hit
ACCTAATTTTCTTTTTTACCCTATTTTATTAGTTTTTGATTAGTAATATA20.12618296529968456No Hit
GAATACTTTTTTGGTTGTGCAAACCAAAGAGAATGATGACTTTGGGTTGT20.12618296529968456No Hit
ATGTTGTGTTGGAACCTCTTCTGTTTCAGAGAGCGAGTCCCTGCTCCTAA20.12618296529968456No Hit
GTTAGTGTTTTGGAGTCGAATATGACTTGATGTCATGTGTATTATTGAGT20.12618296529968456No Hit
GCGCCAAGAAGNAGATGTTGTGAAGAATTGATCAAAGAGAGAGAGAGAGC20.12618296529968456No Hit
GGAATTCATAGGTATAGGAAGAAGCCCTTTCAAATAGAGATTTTTGCTTT20.12618296529968456No Hit
ATATTACCTGTTGCCAAAGCAGGGATGCCGTGCCGATATGCTGACATTTG20.12618296529968456No Hit
GTTTATATACATACTCAAACTTGGGCTAAACCGAACTCTTAACCGAAAAT20.12618296529968456No Hit
ACTCAACGGGGCCCAACTGTTCCTTCTTTGTCTGATTCGAGGGGGTCCCG20.12618296529968456No Hit
TTATTGTTTTGTTTTTTCAGAAAAAAAAATAAATATATTTCTTCAGATAC20.12618296529968456No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)