FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_chi_012.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_chi_012.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14
Sequences flagged as poor quality0
Sequence length151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGCGGGG17.142857142857142No Hit
TCACTTGACTGTCTACGGCTCCATTGCGTGTGCTCGGGGTAGAAGTTTTG17.142857142857142No Hit
CTTGACATGTTCCTCCTCTTCCCGGCCCATCACAAGGGAAACGAAAACCA17.142857142857142No Hit
CATATTAACACCAAAAATATACACAAAAGAAACATAATTCTCATACAAAC17.142857142857142No Hit
GAAATGGGAGAGCGCTCAAAAGGTCAGAGAGTTGATGAGTAAGGAAGGAA17.142857142857142No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17.142857142857142No Hit
AGGCGGGGGGGGGGGGGGCGGGGGGGGCGGGGGGGTGGCCGAGGGGGGGC17.142857142857142No Hit
GATGAGCGAAGACACTAACTTTCCTTTCCCAGGGTACTGGGTGTATTGGA17.142857142857142No Hit
ATTCTAGACAGTTCTGTTCTAGTTTTTTCTCCTTTGTCGTAATCAGGTGG17.142857142857142No Hit
GCGCTAATTGTGTTATAGTATGTAAAAACTGTGATTGTTGCAAAGCTATG17.142857142857142No Hit
GGGCGGGGCGTGGCGGCGTGTGTGGCTTGATGTGCTGTGTCGGAGGGCGT17.142857142857142No Hit
TCCCCTGGGCGACCCGGTGCGCTCCGGCTCGGGCTTCGCGTACTCGTTTT17.142857142857142No Hit
TTACTATTCCATATGGAGTAGTAGTATGTATATAGCAGTACTAATAAGTA17.142857142857142No Hit
CTAACACATTCTATAGGGTTATTNTGGATATTAGTTTTTTTCCAGTACAT17.142857142857142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)