FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_096.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_096.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTGATAGGTGGAGGCTGGGTTAAAATTTTTAATTGAGGCAGTTTTAAT11.3157894736842104No Hit
ATATAATATGAGCTAAGACAGCACTGAAGATTCAAATAACAACAAAGTGT11.3157894736842104No Hit
CTTGAAGTGTACGAACGTCCAAAGCTGCTACATTTCATCCAAGAGACTAA11.3157894736842104No Hit
AATAAAAATTGATTAAAAAATAATATATTGGAAAAAACTAATTAATAATT11.3157894736842104No Hit
CATTATACAAATATATAAAAAGAGCAAAGGTATACCTAATTCATCAAATC11.3157894736842104No Hit
AGGTGGGGGTTGGTGGCCGCTGCGGGGCGGGGTGGGGGGGGGGGGGTGCG11.3157894736842104No Hit
GTCCCTAGAATTTACAAGAGTGCCAAAACTTAAGCTCTTTGAAGAAGAAA11.3157894736842104No Hit
GTGTCCTGCGCTGGGTGGGTTGGTTTCTCTTGTGTCGGCTTGAAGTTCTC11.3157894736842104No Hit
TGCTTCATGTGATGGTGAGCGTGAAATCAAGAAGGGTTCCAGGTGCAATG11.3157894736842104No Hit
TTACAAATACCTTCACATATGCTTGTCATCTTCTTTTGAGTAAACGTATT11.3157894736842104No Hit
GGGTAACCGAAGATTTTGAGAGGATAGGCTATTGCACCTATCCTCTCAAA11.3157894736842104No Hit
GCCCAGTACTACTCATTCTCTAGAGACCATTCTTCTATAAGAAGAAAGTT11.3157894736842104No Hit
ATTATATTATAAAACTCATTAAAGGGTAATTATTAATCTAAAGCTAAAAA11.3157894736842104No Hit
CTACTATATGTATCATAACATGTTATATTTCTGTTTTCATTGCTACATCC11.3157894736842104No Hit
CATACTATAGTTGTCTTGTAATGGGGGAGCAATTACACAGAAGACTGAAT11.3157894736842104No Hit
ATATTAATCCGTAGAGAGACGACGCATTAGATCCTCATCACCAGTTTTCT11.3157894736842104No Hit
CACCTTAATCTCGACAGCCATTGCATCTCGCCATTCTTGATATAACATAG11.3157894736842104No Hit
GTGTTGTACCACATTCTTATACTATGGATTGATTCACGAGCTTTTATAAT11.3157894736842104No Hit
GCGGAACGCGGGCTTTACACGCTCCAAACACCCCCTCTCAGAGGCAGGGA11.3157894736842104No Hit
CACGGAATTGTGTTGTTTGTCCGGTGATCGAACATATGTCTTATTGTATC11.3157894736842104No Hit
CCACTCACCAGTGAAACAGGTAAAATGTTATGTCTTTGTCGGAAGTGCAA11.3157894736842104No Hit
CTTTAAAATCCTCCGCCTCAGTGGAAGAGACTCCGCTGGGAAAATACAGT11.3157894736842104No Hit
AATATGTACGTGTCGCTGTGGTGATCACCCGGCGTGTGAAAGTTTGTTAA11.3157894736842104No Hit
GCAGGGCGGGAGCGGGCCCTGGGCGGGGTTGCGGGGCGGGCGTGGCCCCC11.3157894736842104No Hit
GTTGTGGTTGTGTCGACCGACACAGGTAGGGCCTGTCGGTCGACGTGGAC11.3157894736842104No Hit
GGCCAAAACAATGTCGTTTTTTGTAAAGCATTCTTCCGCGATGGTGTAGG11.3157894736842104No Hit
GCTTTCATGGTGTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTC11.3157894736842104No Hit
CTGATTCATCTGATGATCATATGGGTGATGATGACCGTCGTGATGATGGT11.3157894736842104No Hit
GTGGTGGAATATGTAATTCATTTTTGTTCCCTTGTTTTTTACTTGAGCAT11.3157894736842104No Hit
CCCCGGGGGGGTGGGGGTAACGGTGTGGTCTTTTGATGAGGCCCCTGGTC11.3157894736842104No Hit
AGAAAGATCTTCACCCACTTGCCAGAGGTAATGAACGGAGAATGCAGGAG11.3157894736842104No Hit
GAAATAAGTAGTTTCAGTAAAACAACATTGACCGTTCTTTTCATATCAGT11.3157894736842104No Hit
ATTGAGCATGCCATGATGTTGTTAGAATTTCATATAGGCCTTTATGGCCT11.3157894736842104No Hit
GTTCAGTAGATAGTTTTCATGCTGGCATGCCTTTAGTCCGAGTGGTTCAT11.3157894736842104No Hit
GTGCAAAAGTACAATATGAATTTAAAGAGTAAGACTTATAGTAGTATAAA11.3157894736842104No Hit
GATTTTATGAAACACTTATGTAGATTTTATGGGACTTTGTTATGTTACTG11.3157894736842104No Hit
CCTTCATATAGNGCGATTAGTGTTATTGCATAAGCATTCCAAGCATAATT11.3157894736842104No Hit
GTGTTTGAGAGCTTGACTTTTCATTCATACCTGACCTGATAAAACCAAAG11.3157894736842104No Hit
AGACAATCTCAACAAGAAAACAGCAAGCATAGAACCTAATAAACCTAAAG11.3157894736842104No Hit
AGATTCAAATTATTTGGACGTGTAGTCACAGAATCTGACCTCTTTGAGGA11.3157894736842104No Hit
CAACCATTTGGGGACGAGGTGTGCGTTATTTGACNGGGGGTGTGGGGGTG11.3157894736842104No Hit
TTTGTGCTGTTTGTTGCAATACTTGTTCCTCCTGATACTTGATACCAGCT11.3157894736842104No Hit
ATAATCCCTGTTTCCAAATCATATACTTACTCTACAATCCTTTTTGCCAT11.3157894736842104No Hit
CCCCGACGTCTGGGGCGGATGCGAAGCATGCCAGGTGCGGAGACGATACT11.3157894736842104No Hit
GTGTTCCACTTATGGGTGCATTTTCATGTCCAACATTTAGCAACCATGCT11.3157894736842104No Hit
CGTAATGACTTGGTATTCTTCTGGCAGCTTGAGTTACGAAGTTTTACCCA11.3157894736842104No Hit
GAATAAATTCATGTATATTCCGTTTTAATAAAAGAAATCGCAATAATTAA11.3157894736842104No Hit
GTGTGGTGGGGGGGGGGCTCAGGGCGGGGGACGGGGTGGCGTGCAGGTGG11.3157894736842104No Hit
AATTCAAGAAGAGAATACTACAAGATTACATTATATTACCACACAAACAC11.3157894736842104No Hit
CTTTTCTTCTGTATCGATATGAATCCATTATGAATCGATATTATTACATT11.3157894736842104No Hit
AAACAAATCCAAGTTACCTGAATTAAGTGTCTAGTAATCATGGACCGGGC11.3157894736842104No Hit
TGGTTAGATTGAGTCGTTTCTCCATTTTCTTCTCCCATCGTTTCTTCGCA11.3157894736842104No Hit
CCATGAACAAATCCCACTCTTCTGCTTTCACTATTCGATGAACCTACACA11.3157894736842104No Hit
ATCTTCATCCTNATCACCATTCCAAACCGGAGAGCGGTCCTGGTGTTAAT11.3157894736842104No Hit
CAGTACAAGTTAATAACATGCGGTAAGTTTTCATAAATCTCTCTCTCAAT11.3157894736842104No Hit
CATTTGTAGGAAATCTAGTTTGTCTTATCCTAAACCTTATCTTTAGTATA11.3157894736842104No Hit
ACAACAACAGCAACATGCTTATACACAAAACATAACAAAGTCCCCAAAAA11.3157894736842104No Hit
ATCAATCACTATTCNGATATGGGCAACATGGGCAAAGTCAGAAAAGAATT11.3157894736842104No Hit
GCAATAGACATATGGTATACAGGTTGTGTCATGGCTGAACTGCTTCTTGG11.3157894736842104No Hit
GTGGNGAGGGGCGGGGGCGGGGGGCCGGNGGGGGGGGGGGGGGTGGCCGG11.3157894736842104No Hit
TCTCTAGTCACAACTCACTAACAAGTATGTTATATCATAGTTCATACATA11.3157894736842104No Hit
TTCTTACCCTGAAAAAACAGGGACACCTTGCGTCCTTGAACCGATAACCA11.3157894736842104No Hit
CTTACTTACTGGATAAGAGCAAGTAGATGCAACTATTTGAGATCTGCTCC11.3157894736842104No Hit
GTCATAGACTCATAGGCACAAAAATGACAGTTTAGTTATAATTATGATTG11.3157894736842104No Hit
GCTTTCAGACAAGGACATTTTAGTCTGCAGAGGTTTATGGTGCCTTTTGT11.3157894736842104No Hit
GTATCTACACATATATGTCACTTCTTAAATGCAATATTAGTCCTTTTTGT11.3157894736842104No Hit
CCCTAGCATAAAGAACAAAATCATCTACTCTATAACAAACAAAGACATCA11.3157894736842104No Hit
ATCGAGCAAGTTGATCCGCACACTGATTTCGCACTCGAAAATGATGAGTG11.3157894736842104No Hit
ACTATCATCTGGTTCACAATTTTAGTGTTTGGTATATTGTTAGGGGTGGC11.3157894736842104No Hit
GACTAAGCATGATAAACACTTAGTAAATCAATTCTGACATTTCATCAAAC11.3157894736842104No Hit
GATAAACACAATGAGATAAATTCATATGGATAACACGAAAAAGAGACAAA11.3157894736842104No Hit
GGTCCTTGAGTAAACTGAATAATCAAATCCCTAAAGTGCTCTGTCTTAGC11.3157894736842104No Hit
GACGTAGCTGGACAGAACTGTGCTGAAGGAGCGGATGCCACTGTCCTCTG11.3157894736842104No Hit
GTTGTTGGGGGAGCGGGGGTGGTCCAATAGTTGTCCTGGGGGCTGGGTGG11.3157894736842104No Hit
GTCTTTTAGTCGGGAGAACAGTGTAGCCTCTTCTTTAAGCTTATCACGTA11.3157894736842104No Hit
AATCAGAATTGAATAGTGTCCTTTTTGATATTTTGAATAAAGTGGGATAA11.3157894736842104No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)