FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_087.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_087.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAACGAAGTCGACCTCCGGGTCCATCAGCGCATTCAGGGCGAAGTTC14.761904761904762No Hit
ATTATTTGGTGATGAGTTTATTTATAGAGAAGTCATTTTCTCTTCATAGC14.761904761904762No Hit
GTGAAAGATTAGGTTTTGGTTCGTGTGCCTGGACACAATAGGGTTACTGG14.761904761904762No Hit
GAATGGAGACCATTGGCCTTTTATTATGTCTGAAAATATAAATAAGTATA14.761904761904762No Hit
GATATATCATGCTACTCAGCAAATCAAAGACAGCTCCAGCAGTTGCAAGG14.761904761904762No Hit
ATCTAGAGAAGAAGCACGGGAAAGGATCATGGCGATTAATGAGCCTTATA14.761904761904762No Hit
ACTACAGTGAGGAAGATGACCAGTATGTTAGTGATAGAGATTACATTAGT14.761904761904762No Hit
CCACAAATGAAGTCCGTGCCAAGTCCAAGTTTTGGTACTTTCTCAGGTCA14.761904761904762No Hit
GGTAAATGATGGATTTCGTAATAATGTGAGTTTTGATGATAACTATCATC14.761904761904762No Hit
CATCACATCTATTAATGGCTTTGACTGTGCCCCATAATGTTGCAATTACA14.761904761904762No Hit
CAAAAAAAAAGGAAAAATTTTAGAGTATGGTGCTGCAAAAGTTGGTTGGG14.761904761904762No Hit
GATGTGAAGTTTCCAGATGGGTATGTTTCTAATCTCTCTAAGTGTGTTGA14.761904761904762No Hit
ATACATAACAACGTTGGATCAATATTAGGGCCCATATTTATGACCATGAA14.761904761904762No Hit
GATTTGTATGTTTAGTTTATTTAGTTTTATTGTATTATTTTTATTTAAAA14.761904761904762No Hit
CTATGAACCCTTTAGTAGTCAAAAATGTGCTGAAGAAATGTTTTTGGAAC14.761904761904762No Hit
ACGTTAACTATCTATACAAAGTTAAATTGTAGTCAATGTGTTTCTTACAT14.761904761904762No Hit
GATTTAAAGGTGATGTCACTCTACTTTAGAGAATTTAATTGTGTTCGGGA14.761904761904762No Hit
ATTCGTTGCAGATCAAAAAATGAGATGACCCCTCCCATTCCATAAATTAC14.761904761904762No Hit
ATCTTTCGGGTTCCCTATACTTACACCCATGGATAGCATTGATGTCTCAC14.761904761904762No Hit
CATTTCGCGCGCGGACGCGGCGACGATCGCAAGCCGCTCCTCTAGCGAAA14.761904761904762No Hit
GCTGTTTGGCATGGCTGACCCGATGGCTGGGGAGGATGAAGTGGTGGACC14.761904761904762No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)