FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_082.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_082.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGATGGTGATTCGGTGTTGAATAGAGGCAGCAGTATTGATTCGATCA21.574803149606299No Hit
TAGTTATAGTTAGATTAATATGAACATCCTAATTAATCCAATGATAAGTT21.574803149606299No Hit
ACATGTACTTTACCATAAGCATAGCAAACATTACCGTACTCTAGCATCCG21.574803149606299No Hit
TATATATAGTGNATAAGAGATAAGGTCAGATACGATCCTAAGTATATCAT10.7874015748031495No Hit
CCTTCAGCATCTGTGAAGATTGCATATACGGCAGAGCTAAGAGAGTGAGT10.7874015748031495No Hit
CCTGTAAATACCCCGCCGGTATGAAAAGTTCTTAATGTTAGTTGAGTCCC10.7874015748031495No Hit
TGTCAAAATAATTTAAACTATTATAAAAAATTGTTGCAAAATACCTATAA10.7874015748031495No Hit
GGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCG10.7874015748031495No Hit
GCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATAAAAGCGTCGTGCT10.7874015748031495No Hit
GCGCACTAGATCAGCTAGTGCTACTAGGAAGTCACAGAGGCTGGCTCCGT10.7874015748031495No Hit
ATTCTGATAAACCCTAATTGCAACTGACTTATAAGATTGATCCCCAAAAA10.7874015748031495No Hit
TAGCCTATTTAGATTTGAAATCATACCAAATCTCTCTTCAAACAATTTAA10.7874015748031495No Hit
TTCACAGACACTGCGCTCCTGGGTTTAGATGCGGCAGTCAGACACTCTTT10.7874015748031495No Hit
GGGTTGGAAACGTGAAATGCATGTTAAATGCACTTATAATGGGGTTCAAC10.7874015748031495No Hit
AAGTATTTTAACAATGCTTTCGGTGATGTTAGTCGATCCTACCCGAACCG10.7874015748031495No Hit
TTAGTAAACAGAGTTTCTCATATTAAGAAAGGGTATAATGCCGTCTGTTA10.7874015748031495No Hit
GGATCCGTTTTTGTCGCCAACAGTGACTCAACTAAACGGATATTACGAAC10.7874015748031495No Hit
GTTATTGGCTTCACTTCCTTCAACACTTCTCTTCATCGATATCTTTACTC10.7874015748031495No Hit
AGGATATAGGGTATAGGGTGTAGGGTATAGGGATTAAGATATAGGGGTTA10.7874015748031495No Hit
ATGTTAAACTAACCTTTGCTCGAAATGACTTCTCTATAGTAACAATGTCA10.7874015748031495No Hit
GAACTTATTTGAAGTGGCTCATTTTGTACATGAAAAGCCCATGTATGAAC10.7874015748031495No Hit
GTGTTTAGGAAACTGTTGGTTTCATACTCTCCAGTGGATCAATCGGGTCG10.7874015748031495No Hit
ACATACTTAGGGTTAAGGATTTAGAAAAAAATTCATTGTCCAAAAAAATG10.7874015748031495No Hit
TGCGAGAGGTTACCGTTTGATTTACCAGAAGCGGAAGAAGAATTAATAGC10.7874015748031495No Hit
CAATACTATAATATAAAATATAAATGGTTACTAATGCAGCTAAAACCAGC10.7874015748031495No Hit
GTTACCACCATTGTTGCCTTCTCTGTTGTTGAACTGATTGTAGCTAAATT10.7874015748031495No Hit
GGAAAGAAGCCNCCTGGTAAATACTTTGCAGTGTTGAAGCTTATCCTATA10.7874015748031495No Hit
CCCAGAAAGAGATTAATCGGATTGAATTGGAGATGCAAAACCCAGAAAGA10.7874015748031495No Hit
CTCTTTAATGTTACTGCTGTTGAAGCTGCAACTGTTTTTTTATGAAATAT10.7874015748031495No Hit
ATGCTTGACATACCAACCAATACTTAGAAGAACCAGAACTTAACTAAACC10.7874015748031495No Hit
TTTCTAAGGTAATCTTCTCTTTTCATTATTACTGCATCCATATGTACACT10.7874015748031495No Hit
ATATAAGGATAGTGTAATGTGTTTGAGGTTCAAATCTTTATATTAAATGA10.7874015748031495No Hit
GTTTCCCTCTCGACGATGAAGCTTATCCCCCACCGTCTCACTGGCCGACC10.7874015748031495No Hit
ATACAATTTACTCCAGTCTTCCAATGTTTGAAAGCCAGGTAACTTGGCTA10.7874015748031495No Hit
CTATAAGCTTTTAGGTATGTTACTCGTGTGTGTACATAGGATGTAGTTTT10.7874015748031495No Hit
ATACCATATGGTTCAGCTATAGGACTTATCCTTGCTATATAAGCAAGTAC10.7874015748031495No Hit
GAATCAATCGTCACTTGTTACGCAAGAGAGCGAATTGCAAGGCTTTGAGA10.7874015748031495No Hit
GTTTTAGGAGTAAGTGCTCGTGGAGGAAATTTACAATATGATAACGAAGT10.7874015748031495No Hit
ACATATGGCTTACCATCCTCTTCTAGTAAGGAAGTCTTTTCCGTCCTTCC10.7874015748031495No Hit
TGATAGGACTGTAATTAAAAAAGAGATGGATAATAAAGTAACATTTTGGT10.7874015748031495No Hit
GTACTTTGGGGTATGTGGTGGGGGTGTGGAGACGAGGTTTAGGATCATTC10.7874015748031495No Hit
ATGCAATAAACGAAATAGCAATGTAAAGGGATTTAATTCAAGTGATTAAA10.7874015748031495No Hit
GTCACGTAGGCTTAGCGGTTTTAGAACCATAAATGATTGGTGAACCTGCA10.7874015748031495No Hit
AAGTTAGGGTTTACGATTATGTTCTGCTGTTCTTCGTTAGTGTGATGCTG10.7874015748031495No Hit
GCATGTTGTTGTGTTTGTTTTTGGGGAGGGAGGGGGAGGGTCGAATCTTA10.7874015748031495No Hit
GATTCTTGTTTGCTNACCAAAGCAGGGTGGTCCAAGAAGGGATTATNATC10.7874015748031495No Hit
ATATCTATACTATTAAAAGGGAATCAGTTTTAAAAAGAACCCTGTAAGTT10.7874015748031495No Hit
GTGTTCTGTCTGAATTGTTTAAGGAGTATACTGCTCGATACAGTATTGAG10.7874015748031495No Hit
TATGTGAGAGAGCTCCAAGAGTTTTCTTGAACTTACTCGGATGACTAAGC10.7874015748031495No Hit
CAACAGCTCCGGAGAAACTTCATCATCATCATCTCGTCTCTCCTTGAAAA10.7874015748031495No Hit
GTAGAAGAGCTAATACGTATGCAAACTCACATTGTCCAAGTTCTTTCTCT10.7874015748031495No Hit
CAAATAAAACATACATAACATCTGTACATTAAGGTCTCTTCAAAATCAGC10.7874015748031495No Hit
GTGAAACTATGGGGAAAACAGGGACTCTAGGGATTGAGATCATGGGATCG10.7874015748031495No Hit
GAGTAATTATAGTGTAAAAATAGAGGAAAAAAGAGAGTTACTCTATATAA10.7874015748031495No Hit
GACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGC10.7874015748031495No Hit
GAATATAGGAGATACCAGATAAAGGACGATGGAAGATCTTTGATAAAAAG10.7874015748031495No Hit
TCGTTCCTACAGCCTCTAATGATGATCCGATTCTTTACTCTACTGCACNT10.7874015748031495No Hit
GCATTGGTGGTAGGTGGATGCTACTGCTCTCATACTGTGCAGCCATGGTG10.7874015748031495No Hit
GTTCCTAAGGGGCCCAACGAATTTTTAAATGTAATTATAGGAATTTTTTT10.7874015748031495No Hit
CTCTTTCTGATTAACCTTCCACGGATGATGATTTTAATAGGGATGAAGAT10.7874015748031495No Hit
GAACTGCACCTGCACAAACNTATTAAAGTGCATTCGGAAAACGCTTACAC10.7874015748031495No Hit
GTTGAACTCCAGATGGTTCAATGAATGAATTTAATTAAACATAATAGTGA10.7874015748031495No Hit
TTACACAAGTTCCCTGGAAATATATTTACACAAGTTCTCATATGATGCAA10.7874015748031495No Hit
ATATATTAATTATCAATTGGGTTTTTGCTAAACGGAGCCTGGATACTTCA10.7874015748031495No Hit
ATGTTACTCCAACAAGCGGAAATACAAGAGGTCACTTGAACCTTAAAGGT10.7874015748031495No Hit
GTGGATCTCCAAGGTAAGTATACTCTGAGTTCTAGTTTTAGTGTTTCTGA10.7874015748031495No Hit
ATGCTTTATTTTCTACAGCCACCTTTCAGAGATATTTTTTGGAGAAGACT10.7874015748031495No Hit
CTTTTCAGCAGCTTCCTTGACATATGACATGACCAAGGTAGGATCTGAGT10.7874015748031495No Hit
GATTAATATTAAAACTAAAGATATTCCCTTTTTGTGGGTTTTAAATGTTT10.7874015748031495No Hit
TCACCACCATTTCTGGCATCTACAACTACATCATCTCCATCATCAACCTT10.7874015748031495No Hit
TATATTAACTTATAAATTTCAAAAAAAACTCTGATCTTATTATTTTATTG10.7874015748031495No Hit
TAATGGTGTTGAGTATTGTCCAACAAATTGTTTGTCAATGACTGAAGAAT10.7874015748031495No Hit
TTCCTAAATCAATACATATGCTTTCTAAATCAATACATATGCTTCCTAAT10.7874015748031495No Hit
AGTCGTCCTCGTACTGTGATTTTTTTTTTTAGTTCCATGATATGCTGAAG10.7874015748031495No Hit
ACCCAATCTAATCTATCAAACTATTAATATGATAAACGTTATACTCCTTT10.7874015748031495No Hit
ATCATCATATATGCTGGAATGTTTATTGTTTACTATGTTGGGTTATGATC10.7874015748031495No Hit
ATCAAAATTTCAAGCCTCACCAAAGTTTCATTCACCACCAAAGTTCACCA10.7874015748031495No Hit
TATCTATATTTAGACAATATAGGAATATATCCTTCATCATTTTTGAATTT10.7874015748031495No Hit
TTGTTTATGAAGGTGGTATTCCGAATCTCAAGTGGTTTGGAGTTGAAGGT10.7874015748031495No Hit
ATGATGGAGATCACTGTGAGTTTGGTGTTGACGTGACCATTCCTTCACTC10.7874015748031495No Hit
TACTTAGTCGGAAGGCATCCCAAATTCAGAATAGGCAGTGTGGTAGCCTT10.7874015748031495No Hit
CATTTCAGCAAACAAAAATAGCTAACAATAAATTTCATCACATAACTTGT10.7874015748031495No Hit
ATTTTGGTTGATACACCTATTCTCTCACGCTTGTATGTCACTATTTTGGT10.7874015748031495No Hit
ATTAAAACCAGGCGAGGATGCAGAAGGAAGATCACAATCCAGTTCAAATG10.7874015748031495No Hit
TTTGAATCCTATACTAAACTATCGATACTTAGGTCTTATAATACCTCAGG10.7874015748031495No Hit
GATTGGAATCGAGTACAGTACCGTTTGTTTGGTCGCTTAAGGAGAAGGAA10.7874015748031495No Hit
ATACATGGGTGATTCACACTGCCTTGACTCGACTGCGTTGCACGAGTGAG10.7874015748031495No Hit
CTCTTTTTTATTGAGTAATTAGAATATATATATATAAATATTACATAAAA10.7874015748031495No Hit
ATTGTGANATATGTTAGTTATTTTCATTTTTTTCCAATAGAAAGAGATGC10.7874015748031495No Hit
GCGGACGCCTTTTTGAATCCAATCGTAGATGTTATCCCCGAAATACCTCT10.7874015748031495No Hit
TAAATAGGCAGCTCGAACCGACGAGTGCAGCCTGATATATCATGGATTTG10.7874015748031495No Hit
GTTTATTGATCTAACTGGAGTTTTTTTTCTATAAATCTCATTGATTATGT10.7874015748031495No Hit
ATATTGTCGACTGAGGCATTTTGTTTAAAAGACCTGAAGTAGCAAAACCC10.7874015748031495No Hit
GGGTTGTGATAAGAAACGCTCAATTTTTCGTGCTCTTGCTACGGTTAAGC10.7874015748031495No Hit
CTTCAATTTTAGTAATTTACATGAAGAAACAATTGAGGATTATGTGGAAA10.7874015748031495No Hit
GTCTAATGAAGATGCTCTAAGAACCCAATGACTAAACAAAGTCATCATCA10.7874015748031495No Hit
GTCATGGGAGGGATGTGAGAAATGGCAAAGAAGGCGACATGCACAAAAAG10.7874015748031495No Hit
ATATGAATGCGCATCAANCTCATGTATCCAAGTTTGGCTAGAAATCGACT10.7874015748031495No Hit
ATTTAAATGAATATAGATAACTTTCTATAATTACCACGTAGCTAATCAAG10.7874015748031495No Hit
GGCTTTGGATGGTCCATCGTAGTGGCTAGCCACTAGAATTAAAGAAGATC10.7874015748031495No Hit
ATCCTCATCTATATTCATAAGCGCATTGAAGATCCACCAATAATGTACAA10.7874015748031495No Hit
CAGTTTATAGATCTGAAAATATGAAAAGAAAAAAAGGATAACAATGAAAA10.7874015748031495No Hit
ATATTAGCTTTTGCTTTCAGAGGAGAACATTCACCAACCTACAAGTGACC10.7874015748031495No Hit
GCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATT10.7874015748031495No Hit
GTATACGAGACCGGTGTGCGTACGGATAGCTGCAACTGACAGATATAGCC10.7874015748031495No Hit
ATTGTAACCAGGATATTTAGCTACATGAAGGACACCAAGACAACTTTTCT10.7874015748031495No Hit
GTTTCGACCAGTCTAAACTCTAAATAACGCATTTGCACAGAACTTTCAAT10.7874015748031495No Hit
TAATTAATGATCGCTAGCATAAATCTTTCATCAATAAAATTAAAGAATAT10.7874015748031495No Hit
CAGCAGCTTCAATCCTCTCATTTATGAACCTGGTAGAGAATTTGAGGACC10.7874015748031495No Hit
GAAACTTAACCTCTGACTCTTAAATTCTTGAAACAACTCAACCACATTTT10.7874015748031495No Hit
CAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCGAC10.7874015748031495No Hit
TCCATGATTACTGTTTCGTCTTTTCTTTCCTTTTCGTGTGTTTCGAGAAA10.7874015748031495No Hit
ATACTTCCCAATGCCAAGGAACCACATGGCCGACTGGCCTTATCATCTTC10.7874015748031495No Hit
AGCTTACACTGTGACATATTAAAACAAGGAACACATGAGTTACAATACAG10.7874015748031495No Hit
ACATTACAGTACCTGTATGCTTCTCGCGGGAATCTTATTAAAAATGGGAG10.7874015748031495No Hit
GAAACACTATATCCAGCTTTCTCGGTGAAAATGGGAGAATGGAGCTCGGT10.7874015748031495No Hit
CGAGAGTGATCATTTAATTAATCTATGCTGGTAGATTAGATTATCAAAAA10.7874015748031495No Hit
CTGATATGAGCTCAACTCCAGTAGCCTCTAAAAATGGGGTAACAATCCCT10.7874015748031495No Hit
ATTTTTTGTGTGGTCAACACATTCTTATACAATTATGGAATTACTTTTTA10.7874015748031495No Hit
CATATGTCTCTTTTAGAGATTTTTGGGTTTCGGACACAAGCTATGATTTT10.7874015748031495No Hit
TCATAACCCCACTGATGAGAGATCATCTCCTAGTATAGTTTTGGAGGGGT10.7874015748031495No Hit
ACATAGATCCATGGATCCATACATCTCGATCCGAAAAGAATCAATAGAAA10.7874015748031495No Hit
ATATATAAGTGTGTGGCAACCCTCCACTCTTGAGCTAATTTTTGGGTGTG10.7874015748031495No Hit
GGTTTGTGTTGTGTCATCATCGTGAGACAAGCTGGCATCTACACACACAT10.7874015748031495No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)