FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_077.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_077.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length151
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACAACATCTTCACGTTCTTCCATCCCCCATTATAGTAGAAAACATAAT111.11111111111111No Hit
GTTCGGGTAATTGACCCCCTATGTAGATGTTGGTGTGTAGGGTTCACGTG111.11111111111111No Hit
CTTAAATGCTTTAAATACTTTTTGCGTGATAATGCTTAATGCTTATTCAG111.11111111111111No Hit
AGAATCACCTGCTCCCACTCCGGTTGCGTCAACGCCGCTTCCAGTTCACG111.11111111111111No Hit
CTTGATGTGAATGAGTATAATTACTTAGCCCTCGGTCTCGTCGTGCACTC111.11111111111111No Hit
CAACCGCAATCATGGTTAACGTGCCAAACTCAGACCAAAAAAAGAACCCA111.11111111111111No Hit
GCGGAGGGGGGGGGGTATGAGGGGGCTGTGGGGGTGTTAGTTGTAAGATT111.11111111111111No Hit
GGGGAGGGTCGGAGCGTTGGGGGGGCTGTGGCAGCCGGCCCGCGGGCTGG111.11111111111111No Hit
AGGCTGGGCTGGGGGGGGGCCGCGGCCGCGGGGGGGGGGGCTGGGGGGCC111.11111111111111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)