FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_066.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_066.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1239
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.48426150121065376No Hit
ACTTTATATAGTCTTATAAAAATTAAACCCGATATAAAGAATGATGCAAG30.24213075060532688No Hit
GTAATATAGATGATCATCAAAATACATTTTCGTTAATCGTGTTTTCATAT30.24213075060532688No Hit
TTCTCCTGTGACGAGAATAACTTTAATCAGAACTCTGATAGCTATTGCAG20.16142050040355124No Hit
AGACTTTGGGATGCCTGGAAAGGTGATGCATTCTGTGGTGTGGGTTGCCC20.16142050040355124No Hit
ACGGTGCACTGCACGAGTTCTTCCGCCGCTATCAGCCACCCACATTGGCG20.16142050040355124No Hit
GGATGGTATGAACTGCCTAAACAAGAATTCTTGAACAGCGAACAACCAGA20.16142050040355124No Hit
CCTGTAAAACACACAGAGTATCAGTAAATAAAGCAAAACAATTCTTGAAC20.16142050040355124No Hit
TTCTGGAACCCAATGAGCAAAATCAAAGAAAGAACAAGTCCGGTTTCAAA20.16142050040355124No Hit
ACTTGTTCCGACCTAGGATAATAAGCTCATGGGCTTGGTCTTACTTCACC20.16142050040355124No Hit
TTAATAGGAAGGAAGTTTAATCGGAATGAATCACAAAATTTCTTATATGA20.16142050040355124No Hit
ATAAAATATTGGGCCTATAATCAACAAAGCCCATTATCACAAAAGCGCGA20.16142050040355124No Hit
CTGGTATTTCACAATAAAGTGATAGATGGAAATGCTATTAAACGACTTAT20.16142050040355124No Hit
AAGGTCATTTCTTCAATTTACTCTCCATTTCTAAGTTTGTAGCCTTCGCA20.16142050040355124No Hit
AGCTAGAGGAGACTTGTTTGTCTGGGATAAATTGTCATTCTAGACCCGAT20.16142050040355124No Hit
TTAGTAACATACTTTGTTTTTTTATATTGTTAACCTATATCAAAAATTGC20.16142050040355124No Hit
GAATGGATTGCTTTGATTCTTGTCCCATACGAATGTTGACTCTTGACGCT20.16142050040355124No Hit
GGTTTGTTCAGAGTGGTTGACAACACCTTTATTGATAATTTTACCTTTTG20.16142050040355124No Hit
CACCATGAGAAATAGAAATTGACTATGGTTGGAGTCTTGGAGATTTTTAA20.16142050040355124No Hit
GTTGGGGCCATCTCCACAATCTTTATCCATCCGCCAAAATAAGAAGAAAA20.16142050040355124No Hit
CCCCCCATAGTCTTCCTCTATATGTATTTTCTTAGCATAGATAAACTATT20.16142050040355124No Hit
GGTTTTTGTCATTAATAGATTTAAAGTTGATGGTTTTTTCCATTAAATCT20.16142050040355124No Hit
ATATAATTTTGTCCTGCTTAATTAAAATAGCTGTTTGAATTCGACACACA20.16142050040355124No Hit
AATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAA20.16142050040355124No Hit
TAGTTAGAGAGATCATTGTGTCCATTGTCATAAAGAGACAAATATATCGT20.16142050040355124No Hit
CATTTGTGCCCAGCCTACTTCAGCACATCAGCGCCCTCGCAGTCCTCCTT20.16142050040355124No Hit
ATTAATACACTGTTCCAATAAAATCCCAAGTCTGAAGCTGTTTGTAATTG20.16142050040355124No Hit
GATTTATGTTGCTACCTTTGTTATTCGACACAAGGAAAAAATTGTCAAAA20.16142050040355124No Hit
ATTTTATACTCTTATTGATATTCTCAAAAAGTTATATTTCCACTATTATT20.16142050040355124No Hit
CTCTTTATATTCCCTCTTTGTTTTCCATAGATGCAGTTTTAGTGATAAGA20.16142050040355124No Hit
TACTAAAAGTTTTAACCTAGTGGTCTAATGGTTCATATTTGAGGAGAAGT20.16142050040355124No Hit
GAATTACATTTGAGTTTTTCCTTCATATTAACGATGTCTATGGATGGGTC20.16142050040355124No Hit
TAATAGAGTAGATCCCCTAAGGTATTGAGCAGCGGTGTAGCATCAGATCC20.16142050040355124No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)