FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_056.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_056.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTATGATAGATATGTTAGTATAGATCGTTAACATATCAAGCCAATTT11.0204081632653061No Hit
ATAAACGTCAGAATAACAAAATAACCAAANACAAAACAACTAGTATTGAT11.0204081632653061No Hit
TATATATATGGATGTGTAATATGTAGATGAAGAAATGGAAGTCATGGGAG11.0204081632653061No Hit
GGAGAAGGGGTGTCTGCTTTCATATGTTACTAACTCTTTGTTTTCTTTAG11.0204081632653061No Hit
CAGTTTCGCTACAGCACCCGCTGCTCTAGCTAATTGTCCACCCTTTCCAA11.0204081632653061No Hit
CTATTATGCTTAAACAGGAGCTATTAGAGCTTGAAGCTAAAATGACTTGG11.0204081632653061No Hit
ATTCACCAGTGAAACGACCAATACCAGCTCCAAGTTCAAGCACTGTTTTC11.0204081632653061No Hit
AATAACCGCTTGTGCTCTTCATATCTTCTTGACCTCCAGCCCAATCACTA11.0204081632653061No Hit
CGGTTAGCTCGGCCTATATCAGATGATAATGTCACTGTTGCTGCTTCTTC11.0204081632653061No Hit
ATATTTTCCTTATATCTAAAGATAAAATTGGAATGGGTAGGATTGAATCT11.0204081632653061No Hit
CCAGATCGTTCGTCGTATCGGCAGCGATTGTGTTCCAAGTGCTCCGCGAC11.0204081632653061No Hit
GAATTATAGTTTCTATATAACAAAAGTAAACATTTCAAGTTTGGCAAGAA11.0204081632653061No Hit
CTTATAATCTATAATCTGATGATCGAGTCGATTCCATGATTATAAGTTCA11.0204081632653061No Hit
GTTTTGAGTTGTACCAACCACCCAAAATCCAATGTCGTTATGGACTAAAT11.0204081632653061No Hit
CTCCTGAACAACAATCAACAGCCTTATTGTATCATCCATGTTCAGAATAA11.0204081632653061No Hit
CAACATCTTAAAAAGAAACACAAACTAAATCAAACCGCTAAATAATAACC11.0204081632653061No Hit
ACTAATGGGATGCCCTAATACATTACAAAATTTATCTTTAGCCAACGATC11.0204081632653061No Hit
TTCTCAATCAAACGAACCCCTATCTCCCTGCGCCACGCTTTGGTGGGGTG11.0204081632653061No Hit
GGGCTTGTCGATGCTCGGACTCTCGTTCGGGTTGGGGAGGCAGCGCGGGT11.0204081632653061No Hit
TGGTCGTGGTTCGGGTTGGGCGGTGGTGTGGGGGGGGGTGTGTGGGGTAC11.0204081632653061No Hit
AGATAAAGATGTAGCTATATATGGTTATTGAGATTTATTGTTGCATTGAT11.0204081632653061No Hit
TCCCAAGACTGTCTAAACCAAAGGTTTGGAATACATGAGTTATTAAAAAA11.0204081632653061No Hit
TTACTACTCTTTCTTTTTTATTTTATTATTCTACGCTCTTTTCTTAATTG11.0204081632653061No Hit
CATCAACTCAGTAGGCACTCATAGGGAGCATCTGTTGCCTCACAAGTTGT11.0204081632653061No Hit
ATCAGATATAGATAGGAAATTATTAAGGGTTATTCATCTATTGTTGATCT11.0204081632653061No Hit
AGTCGGAGGCGAGGATGACAAATGCAATAATACGAAGCAGATATGGAAGA11.0204081632653061No Hit
AGAAGAGAGTTTGAGAGGGAGGAATCTAGGAAGTGGTGACCCAAATTTAT11.0204081632653061No Hit
AAATAATACTTAAAGTATAAAAAAAACAAAAACAACAATATTTTAAATAC11.0204081632653061No Hit
GATCTTTAAGGCCACAAAGCAGTTTGCCTAAAGAAGTCATGCTTCTCGAA11.0204081632653061No Hit
ATCGTTAATTGCTAGCTTTGAGTTGTTTTCTGGAGTCTTTCCGAGCAACA11.0204081632653061No Hit
ATCACACCCCCNCCTCATGTCGATCGACACGCAGGGTGTGTGTAGGTCGA11.0204081632653061No Hit
TTTTTATACCGTAAAGCACAAACTAAACTATAGACAATTTTATATAAGCC11.0204081632653061No Hit
GTGTTTGCGCACGGATGGTGTGCGGGGCGGGCGGGGCGGGGGTGTGCGGG11.0204081632653061No Hit
GAATCTAGACTTAAGCTAATCGGATAAACTCCAGAGTTCATCAGTATGAT11.0204081632653061No Hit
GAGCGATAGCGAAGCCAAGCCGTATAAAGGCGAGCAGCCCTTCTAGCAAT11.0204081632653061No Hit
ATATAGAGCTTTATTTTCGAGTTTATGATGGAACTTTTTTATTTTTTTTG11.0204081632653061No Hit
TATATATACTCAAATTCAACTGGTTGAGATGAATGCAATTCAAAAAAAAA11.0204081632653061No Hit
TTCTAATCATGCTTCTACTTCAGAAAACAATGTCATGATCACCATGAGCA11.0204081632653061No Hit
GGGGCAAACAGATACACAATGGAGTATCAAACATTGAAAACAGAAGATGA11.0204081632653061No Hit
TCTGACTCTTGCACTCGGTGGGTCGAAGGAGCATGCCGACTCGGGCTCGG11.0204081632653061No Hit
CTTTTGAAAGAAGATCTTTTGTCTCGTGGTAGCCTGCTCCAGTCCCCTTA11.0204081632653061No Hit
AATCAGAACTGAACATAAAAATGGATAGAGCACATGTTTATTTCGAGGGG11.0204081632653061No Hit
GAAATCGATACACCTCCCCTCACAATAATTTATTGAATATGATTTTGCTA11.0204081632653061No Hit
AGACTGTGTAGTAAACTGTGGATGCAAATAGGAATCCGGGGAGACCCAGC11.0204081632653061No Hit
ACAATAAACTTTGCCATCAATTATCTCTCTCTCTTTCTAGCACAACAAAA11.0204081632653061No Hit
GTTTATTGTATCTCTAAAATTTTGCACCCCTTTCTAATGTTAATAACTAG11.0204081632653061No Hit
ACTTAATGCTTAATTATATTTAGATTCTGACTTTTGCCAGTTAAATAGCT11.0204081632653061No Hit
AAATACTACAATTCAATGTTGAAATCGCGTAAAATATATTATAAAATGTA11.0204081632653061No Hit
ATACCATACATTGACTATATTTAATATCTTAAGAAAAAATAACATAAAAC11.0204081632653061No Hit
GCATAGTATTCCTCAACAAATGTCTCAGGTCATGTCAAAGTATGGATCAG11.0204081632653061No Hit
CTTTTATCCGGTGATTTCCAGCTGCGCCAGTTCTCCGCCGGAAACGCTGC11.0204081632653061No Hit
TTCAATACTTTTTAAGGTAAAAGTACAAAATCATTGTTGGACGGTATCAG11.0204081632653061No Hit
ACTATAAACCATCTGAAAAAAAAAACATTAGTCACATAAAATAGCTCTAA11.0204081632653061No Hit
TTATAATGAGCTGTGTAGACAAAATTCATTCACTCTGGAATTCTTTAATT11.0204081632653061No Hit
CCTATATATACTTTTCTTTATATGAAGTTAAGGAATTGAAAACAGTTCGA11.0204081632653061No Hit
GTGTTTTTGTTTATAGTTAATTAAAAAAAATGGGACAAATGGTTAATCCA11.0204081632653061No Hit
CTGGCGAACTGTGGGGTGTCGTAGAATTGTGCGGCAGGGGTGTGCGTTTG11.0204081632653061No Hit
CTACTGTGCAGGATGAATTTTCGTCCGTTATAACATAAGGCGTGGCGTCG11.0204081632653061No Hit
CAGTGGAAGTNTGTTGAATCAAGAAGAGACAGTAAGCGTCTTTTTTATGG11.0204081632653061No Hit
CCTGTGCCCGTGGTGGTGCGCGATCCGCCTGAACCACCTCCTCACGCTGG11.0204081632653061No Hit
AATGATATCTAATCGGATGAGCAGTTTAATGATCTAGATCTAGAACTTAA11.0204081632653061No Hit
CTATAGAAATGTGTCTTTGAAGAAACATTGTGTACCTGAAGGAGGCGGGA11.0204081632653061No Hit
AAGATCAGCATGGGCCCCAACGTGCAGGCGTTCAACCGCACCGCCGAGCA11.0204081632653061No Hit
TTCTTCTACCTTCTATCTTCAATCTTCTTCTTCTTTCGAAGTTAAAAGCT11.0204081632653061No Hit
GCTTGGTCCATTATCTCTTCCGAGGGTGTTCCGAGATGCGCTACTTGGAA11.0204081632653061No Hit
GATCTATGCAGAGAATGGTGAAGGAAGCATCGCTTTTATACCACCAGCAA11.0204081632653061No Hit
CAGTCTCAAGAGTGCCTACTCGACCACGCAAGTGGGTTCTGAGTTCAGTG11.0204081632653061No Hit
AACAAAAGAACATTCATATGTACAGAAAAAAAAAATTTATTGAAACTATA11.0204081632653061No Hit
AAGCAAAGAACAAAACAAAGATTAAAAGAAATTAAAAAAACAAATTGAAA11.0204081632653061No Hit
CTTATAATGTTTATCCTTAACTTTTCCTTTGTACATGTTTATGAGTTTAT11.0204081632653061No Hit
TATTACATCTCAGTTTTCGTACCAAAATGAAAAATAACGCAGAAATACTA11.0204081632653061No Hit
GTGGTAACGTTGATAACTCTACGGTAACTGAGTTTGTCAAATAACTCTGC11.0204081632653061No Hit
CAAACGTACTAGACTTTTCTCCTTTTTCCTCAGATGTCTTATTAGTGGAC11.0204081632653061No Hit
CGACAAGACCTAGAGGAAGACCATTGCTGCCGCTTAAGTTCCATCGATTG11.0204081632653061No Hit
ATGTCATCCCAGGTATCGATCTCAGGTACATCTTCAAGATTCTCGAAATC11.0204081632653061No Hit
TCTTTTAATAGTCATACTCTGACCAAAAAAAAATGTTAGAGATTTTCTTT11.0204081632653061No Hit
ACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGTGGTTCCAAATTAAT11.0204081632653061No Hit
AACTAATATATATATATTTATGATCTCAGGGCCACTCAACCAGAATATAA11.0204081632653061No Hit
CCTCTATAACCTTATCACTCGGTAGAGTGGGATTGACTCTCGTATCATAG11.0204081632653061No Hit
CTTGTTAACAAACAAATAAATCCATTCTGAAAACAAAATATGATCATACA11.0204081632653061No Hit
ATACTCAGTCGTACCAGCGTCTTTAGGCTCTATAACTAGAGAATGAAGTG11.0204081632653061No Hit
TTCTGGAGCTGTTTGGAGCACACTTTGATTTTGGGCTTATGAAGTGAAGT11.0204081632653061No Hit
GTGGATGAGATAGCTATGCGAGTAGAAGATATCCTAAAAAAAAAAGAAAA11.0204081632653061No Hit
GGATCGGCCATGGGGAAAAAGCTATCAGAGTTGAAATTGGGGGTTGGATT11.0204081632653061No Hit
GTTTAATTAAAATTATTTTATAATAATAATTAAGACTAAATATTAATCCA11.0204081632653061No Hit
CTTCTTCAGCTACACGTTTCCTGTGTCCCTGGAGAACGAGCAAATATAGT11.0204081632653061No Hit
GCAGAAAGTGTTATCTGGAGGACTAGGCTAAAGTGAGTCAAGAAGGTAAA11.0204081632653061No Hit
CGCAAGTATAGTTGGAATAAGGCAAAAGTAAGGCAAAAGTAAGGCAAAAA11.0204081632653061No Hit
TTTATAAGGCAACCGAAGGTGCTGAGGGGATTTGATGAAGACGTGAGTAA11.0204081632653061No Hit
GTCCAAAAACTAACAAACAATGATGGACTTCTCACACTGCTTGTATCAAA11.0204081632653061No Hit
GTTGATGTTAATTTACACCATAACCAGACGTGTGCAGCTTTATTATTTTA11.0204081632653061No Hit
CAGCAAGTATTTTTAAAAGAAAACAAGAAGACTTGCAATAAAAGTAAATA11.0204081632653061No Hit
GACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAG11.0204081632653061No Hit
CCTATAGTGACTGTGAGACAAAACCTTCCGCGGTCCTCTAATTTTCGGGG11.0204081632653061No Hit
ACAGAGACCGATGTCAAGAGACCAGGTGAGTACCCTATCCCTAGGTGTGA11.0204081632653061No Hit
TCTTATGGCTGAGAGAGAGCTGTCTCTAATTCTCTTGTTTTTATTGAATC11.0204081632653061No Hit
ACATAACCTCAAGCCTTACTCCGTTCAAATTCTTCTTCAGTTTGGCATCA11.0204081632653061No Hit
CAACTAAAGCAACATCAACCACAAGACCAACCAAAAGATCAGCTGCATAC11.0204081632653061No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)