FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_055.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_055.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1153
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATTTTTTGATGAACGAGATGCGGATTGGATGATTGTTCCGAGTTCACC40.3469210754553339No Hit
ATTAAGAAGTAATGCATCATGATAAGTTCTGGAAATTTTTTAATGGTGGT30.26019080659150046No Hit
CGCTCCTCCTGTTGTTATGTTGAATGATAGACAATTCAAAAATTTGTTGT30.26019080659150046No Hit
GTCTTTGGGTCCACTTACGTCTTAAGACCGCACCGAGTTGGGTGTTAAAA30.26019080659150046No Hit
GTTTAGGGGAGGCGGAGGAAGAATAGAGAGAGAAAGAGGAGAGAGAGAAT30.26019080659150046No Hit
GTACCTTCATGAGGTTAATGAATCATGTTCTACGTGCATTTATAGGACAT30.26019080659150046No Hit
ACGAAGACCTCTGTGAGTCTTACGTGGAAGTCTTGTAACACCCCAACGAG20.17346053772766695No Hit
AAAACATCATTTTCGAAAATTAAAATAATTTTTTTTTTAAAACTTAAGTT20.17346053772766695No Hit
GTCAACTACAAGGTCAACCCCAGTCTTTCTTATAGGAATACTAATGTGGC20.17346053772766695No Hit
GTATTCTTATCTATTATTTTGGAGATTTATAATTCTTCTGTTCTACTGGA20.17346053772766695No Hit
GTCTATGCTTTTCCCATCTGATTAACCAAGAAATCAAACAAGCAATATTG20.17346053772766695No Hit
CAAAGATGGAGATTGGATGCTCGCCGGAGATGTACCTTGGGGGTATGTTC20.17346053772766695No Hit
GTATTTAGGGTTAGTGTCGACAGAAGAAATCTTAGAGGAATATTCAAATA20.17346053772766695No Hit
GTGCAACACTCGAGGTACTTAAACTCACCAATGTATCGCTTACGGATGTT20.17346053772766695No Hit
GTTATATATATTGATGCAATGAGAGAGAGGTGTAGAAGGGTCGAATATAG20.17346053772766695No Hit
GCTCACGCCTAGAATCGAATGGGGATTGAGAGATCTTGAAAATCTTCGAA20.17346053772766695No Hit
ATTTGAAATTCATTATTCGCTAGTTTACCATAGACCAATCGTTAAATTAC20.17346053772766695No Hit
CAGCTATACAACCGAAAACATTAAAGAAAAAATCCGAATGTTTCTTAACT20.17346053772766695No Hit
AGCTTGTATGATGCTTTTTTCAGCCAATCTTTCATCTCCTAGATACGATT20.17346053772766695No Hit
TGGTATGCACTTCCGTGTACTAGCTAAAGCTTTACGTCTATCTGGTGGAG20.17346053772766695No Hit
CTGATCACCCCTCCTACTAGTCATAAAAGGTTTCAAGTTTTGCCTTTCAG20.17346053772766695No Hit
TTACCAAAGTATCATCTACCGAAGTATCATTCATTATCATTTGACTAATG20.17346053772766695No Hit
CTGATCACCCCTCCTACTAGTCATAAGAGGTTTCNAGTTTTGCNTTTCAG20.17346053772766695No Hit
GATTAGATCTCATAGAGTTCAATTCCCGTTCTCAACCCACGACCAATATG20.17346053772766695No Hit
GACTAGGGGTGTTATGCCGATTCTTTTGAGTAATATATCTGGAAATTCCC20.17346053772766695No Hit
ATCGGAGGTTATGTTCTTTTTTGCTTTTTTTTGGGCTTCTTCTCATTCTT20.17346053772766695No Hit
GTCTTAGAATANTTGTCTTCATTCGATGATTTATTTATCTCAAACAGTTC20.17346053772766695No Hit
GTATTGTAACGCAGCTGGGGCATCGGCCGTTTCAGCTACCACAATAGTGT20.17346053772766695No Hit
GTCAAATATGTTGTTTGTTTCTGTCTTCGCCCTCAGTTTAATTAAGTAGG20.17346053772766695No Hit
AGTTTGTGCATGATTCAGTGGACCGAGTCAGTTGATAACTCTTTGTGCTT20.17346053772766695No Hit
GAAATAGTGGGAAGTTTAAGGAGGCCATTCTTCGAAGCACATTTGTGTTT20.17346053772766695No Hit
CTTATTGGACTCTATGTATTAACGAGCGGCACTCGTCGAGGTATTTGTGC20.17346053772766695No Hit
ATTTTATTATGCAGCAAATACAATTTTACAATCCTATAATGGAACGGGAT20.17346053772766695No Hit
GTTAAATATTGCATCTAATTTTCTATAATAAGTTTTATAAAGATTAGCTT20.17346053772766695No Hit
GATTTCATAAGTTCCCTTGGATCTCGGATGCTAGAGTACGAGAAATGTTT20.17346053772766695No Hit
GATATGCAGACACCTCAGTTAGTGGTGTGGACATGAGATTTGTGCTATCT20.17346053772766695No Hit
GATGTACATAGTTGCTATTGAGCAGGATATGCAGTTGGGTCAGTAGATGG20.17346053772766695No Hit
ATCTGGATAGAAAAAGAGAAGAAGGAATAATTGTTGTCGTCATGCTTCAA20.17346053772766695No Hit
ATGTTTAACTCCTTTTTTTGAGAAAGAAAAGAAAGAAAAATTCAGAATCT20.17346053772766695No Hit
AAACCTGATAGGCGTGAACCANATCTAAACGCCCAGTCCTAGTGTGATAT20.17346053772766695No Hit
ATATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTGGGCTATTTCT20.17346053772766695No Hit
GGCTAAGGTTCAAGGTATATATATATATATATATCATCTACTAAAAAACA20.17346053772766695No Hit
ACGCATAGTCATTAGCGATGGTGGATCACACTTCATCAATAAGGTATTTG20.17346053772766695No Hit
GTCAAAAAAAGGGAGAGGTATTTGGTCACCATTGATGAACTACTCAAAAA20.17346053772766695No Hit
GTTTTTCTCTGTCTTGTTCTTACTTTTCTTCATAGTTCTTCATTTTTCTG20.17346053772766695No Hit
GATGTGGATCTCAGACCTATGAATGGGGATATTCTCGAAACTCACAAAGA20.17346053772766695No Hit
GGATCTAATGAAGAGTATAAGGTAGACTCCATTAGTAACAAGTAAATCCT20.17346053772766695No Hit
ACCAAGATCATTGCCATCTGGTATTGACCTATCAAATCTAACCCCGATTT20.17346053772766695No Hit
AAATAACACGGTAGTGCGGAATCTGAAAATAAATGCAAGCTATTTATCAT20.17346053772766695No Hit
ACTCACCTTTTCATATATTCCTGAAACAAAATCAGAAATTCCACCACCAC20.17346053772766695No Hit
ACCGGACTGATGGTGATCGGCGGCGGCCAGGTGTTCCTGTCTCTTATACA20.17346053772766695No Hit
GATTCTGATAGNGAGGATACCCAAAAGAATGCAGGCGAGGAGAAATCTGT20.17346053772766695No Hit
GAGCCAGTGGATCTGATAATACGACGGAGATCAGCTCTAAAGAGTAGTAA20.17346053772766695No Hit
CTTGGTGCCTTTAAAGATATGTAGTATAACTGTATAAGGATATTCATAAT20.17346053772766695No Hit
ATATGTACCCTGAAGTTTTGTTGTACCTTGTTCCATTTCTGGAGTTAGAT20.17346053772766695No Hit
AAACACTTATCTTAACTTTTGTAACCCTAAGTTATTTTTGCTTAGAGTTG20.17346053772766695No Hit
GATAAATATATGGACCGAAGCCCAGAGTAAGGTAATCTTGCATAATTTAA20.17346053772766695No Hit
TGTGTGGAGAGCTCACTTATTTTCTGGGGTTACGGATCAAACAGACAGAT20.17346053772766695No Hit
TCTTAAGGTGGCTCATTATGTATGCATTGATCTTCGCAGCTCGAGCTCGC20.17346053772766695No Hit
GTTCCACTCGTCTAAATGACCAAGGATCATGTACTCAACACCATATGTGT20.17346053772766695No Hit
ATTTCATTGTTGTCAGTATTGACATGTAGAATGGGACTCTATCTTTATTC20.17346053772766695No Hit
GATCTAAGAAATATATAGCTAATTATGTACTACTACTATCTTATTAAGAT20.17346053772766695No Hit
AATTATACTTATCAATATATGTCTCGAACATATAACTGATATTGCAAGTG20.17346053772766695No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)