FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_052.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_052.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTAATTGTTTGTTGACACGGACAAAGTCAGGGAAAACCTCTGAAATTA111.11111111111111No Hit
ATCTTGATCAGTGATCGAAGCCTTTCGGTTTTTCCGACGTAAACTTCCGG111.11111111111111No Hit
ATAATAACAAATAAAAAGAAAAGTCAAAAAACTAAAGATAAAACAGATCC111.11111111111111No Hit
GATCTCATCAAACATACAATATAAGCAAAAACAACAATCACAGAAAGTTT111.11111111111111No Hit
ATGCACAGCCTTGGCTTGTGGCATTGCGCTTACTGCAGAGAAGCTGTCTC111.11111111111111No Hit
GAACAGGTACACTCGCACAAGTACCGAATGTTCAAGTAGCTGGTAAAACA111.11111111111111No Hit
ACCCAATGAATGTGAGTTTTTCTATTTTGACTTGATCCCTCGCTGTGATC111.11111111111111No Hit
GGCTAATGAGACCTGGGGCTCGTATTGGAACTGGGATCCAAAAGAAACTT111.11111111111111No Hit
ATTGCTATCCATAATGGAAAGGAACACTTACCCGTTTATATAATCGATCT111.11111111111111No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)