FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_051.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_051.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTATTAGAGTATTGTTTATTTATTTTGTTGTACAAAAAAACTTTTTGA21.9047619047619049No Hit
TACCTGAACTATCAACAGGCTTCATTTGACCATGTCTACTAGACTTATCA21.9047619047619049No Hit
GTTAAAAACATATAATCTCGGTGATTAACAAATATTAGTAGGTGGGCGAC21.9047619047619049No Hit
CATAGGGATCTTAAGCAATCTGACTGGCCAATGAGTTTTACATTAGTCTT21.9047619047619049No Hit
CATTTACTTTAAACTTCCGGTTGATGTATGATCGATCGATCACAAATAAA21.9047619047619049No Hit
AATTCAAAGTAGCATGCATCTATGTGGATTAAAAAAACATAAAAATTGAA10.9523809523809524No Hit
ATATATATGATATATCCTACCATCACTTAATATACAGTATTTGTGTTTTG10.9523809523809524No Hit
ATGATGTCTAGAGCATACTTGCGCTGAGACAAGAAAATTCCTTCAGGACC10.9523809523809524No Hit
AGGTTGAACTTCAACAGTTAGGCATTTAAATAGTTAATTATCCTAAAATC10.9523809523809524No Hit
ACAATATCCACTCTTATGTTTTAGGTTTCGACACTCGTTATCACNATCTG10.9523809523809524No Hit
GTTTTTATGCAAGGCCAATGAAGAGCAATGTGAGATGTTAAGTCAGATCT10.9523809523809524No Hit
GGGCCCTTTTATGGAGAACACTGTAACACACCTGCACAATGTTTTGGGTG10.9523809523809524No Hit
GGAACAACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTG10.9523809523809524No Hit
GAATTGTAACTTTGCCCCAGAAGTTTCCAAAGTTTATACTTCATACCTAA10.9523809523809524No Hit
ATCAGATAAGTTCTCTTTTCTAATCTCAGATTCAAGACTCAATCGAGATC10.9523809523809524No Hit
GATTAAGAGCTNAAATTTTGTGTTATTTTTCTTGAGCTAATATTAACAAG10.9523809523809524No Hit
GTACTTCAATATGATATTTTAAAAATACAACATAACAATTATTTGGTGTG10.9523809523809524No Hit
TAAAATTATGTGATTGGTAACAAACCGCGAAATCAAACTAAGATTTTGTT10.9523809523809524No Hit
ATATAATAATAAAAATTATTCCGAATAGAAATAGAGAGAACCTTCTCGGT10.9523809523809524No Hit
GTCGTGGAGCAACTACTTAACAGTAGATATTGCTCCTTTGGATTTTAAGA10.9523809523809524No Hit
CTTTAAAAATCTCCAAAAATTTGAATTTTCAAACTACCAAATGAGATAAA10.9523809523809524No Hit
ATGATATATCATTTGCTAAAACAATCGGATCGTTGTTCCCCCGGTGATAG10.9523809523809524No Hit
AAGGTGTTGTTGTTGAGTTGGCAGAGAAGGTGGACAGGCTTGAGAAGGAA10.9523809523809524No Hit
GTAAAGATCAATTGGAAAGGTTTTGGACCGATACAACAAAAGCTGTTTAT10.9523809523809524No Hit
TATTTACAGAGATATTTAAGCATATTGGTAAGAAAGGTAACAATTGAATT10.9523809523809524No Hit
GTATTAGGGTGATCAATCCGAAGACTAGTGTATTATCAAATCTAGATGAA10.9523809523809524No Hit
ACGCTAGCAGGACCCTGGATGAGGCACAAAGAAGATATGCAACAACAGAG10.9523809523809524No Hit
GTACCCATTTCGGTACTAAGGGTGGGTTGATAACCCACAGCAGAAGGCAT10.9523809523809524No Hit
ATCCTGGAGTGATGTTATTTTCCCATTGATGTGCCTGTCTCTTATACACA10.9523809523809524No Hit
ACACATATATAAGCGAGATATTCTTCTAGCAAAATCTTCGTTTTCCCGCT10.9523809523809524No Hit
GTATTTATTTAATAAAAACAAAAGATCAAACACTAAACAGAACAAATAAA10.9523809523809524No Hit
CCACTCGACACAGGCGTTTGACCTAGGGTATTCAAACGAGCACTCGACAC10.9523809523809524No Hit
ATATTATTTTCATATTATTTTAAATTATTATGTAATACATATNATTAATA10.9523809523809524No Hit
TCTCCATTGTANGCTATTTTCTTTCTCGTTGGCTGATAAGGCTCATAGAT10.9523809523809524No Hit
ATTGGGAACATCAAATATGCTTCGGATTTGTCGCATTATTGCTGAATAAT10.9523809523809524No Hit
CATGACACCTCCACCGGGGTTTGAAAGCTCCATTGCTCCCGGAAAGGTTC10.9523809523809524No Hit
GTATTAATCAACCAACAAATATCCAACAATGAATACAAGAATAGAGGCCC10.9523809523809524No Hit
CATATATGCCATGGTTCTTTACTTCGACAGGGTACAAATATCTAAATTTG10.9523809523809524No Hit
TCTTCCTTCTATGTTTTAACACGAATCAAGCGATTATGTAGTTTCAAAGA10.9523809523809524No Hit
GTTCTTCTATTAAACCCTGATCAATAAACCGATAAAACCCTTCAAATTGT10.9523809523809524No Hit
ATGTTACTCTCACGCTGTGTAGTCTCGGTGGGAGATTGATGAGGTGAGGC10.9523809523809524No Hit
GATATGATGTATGCGGTAAGTTGTTTATCTTTGCCCTAATATCTTATCAT10.9523809523809524No Hit
TTCATCTATTATTTTATGCTCGTTTTTTTTGATATATTTGATAGAAAGTT10.9523809523809524No Hit
GCCTTAATCTTGGCAAATGGCCTGGAACCACTTCCATACTGAAGCTTATA10.9523809523809524No Hit
GAGAGTATTTGTGCATATTCGCGGGTTTTAGTCGGTAACTTTTTTTTCAA10.9523809523809524No Hit
TTTCAAGAGACTGTTAACCACTTTAATGCCTTTATCCGGCTTTGCAACAA10.9523809523809524No Hit
AGATCGACCACCTTTATTTGATATATTTATTGGATTTAATATAAATAATA10.9523809523809524No Hit
ATATGCAGCAGATGGTCTTTTGATCTGGAAAGCTATTGAGAACTTAGTTG10.9523809523809524No Hit
ATATAAAATGTATATACTTAAGTCTTCGAGCCAGGCAGCAGCTCACAGGT10.9523809523809524No Hit
GTGTATCTCACACGATGCAGCCTTTCACTGAAATTCCCAAGGGTGTCGCT10.9523809523809524No Hit
GGTGGGGGTGGGGGGGGGGGGCGGGCGGGGGGGGGGGGGGGGGGGGGGTG10.9523809523809524No Hit
CCATAGTCCTGGGGCTATTTACAACTAGCCAATTCATAATTTTCAGATGT10.9523809523809524No Hit
GAGGTAGCTTGGATCTGTTGATTCTGATGTAAATTTTGACCTTCAGGTCG10.9523809523809524No Hit
GCCTTGGGTGGCGATGCACCATGTGCATGTGGCGACGGAGCCTTAGCCGA10.9523809523809524No Hit
GCAACTGATAAATTCTCAGGGAACAACAAAATTGGTCAAGGTGGATTTGG10.9523809523809524No Hit
ACACAGTGACACTCGCATTACTTGGTATAAGATCTTGACATGATAATAAT10.9523809523809524No Hit
GATCTGCATGCTATGATCACAAGTCCTTTCCCAGAAAGGTTCAAAGCTGA10.9523809523809524No Hit
AACTTATGGTGATGATTATACGGAAACGTTTGCACCGGTTGCAAAGCTTG10.9523809523809524No Hit
ATTTGAATCTCTGAAATTTTCATTCTTGTAACATTCTTTAATTTTGTTTG10.9523809523809524No Hit
GAAGGAGGTCAAAGCTAAGTGCCAGTGGTTGTGGGCTCAAAAAATGTCGT10.9523809523809524No Hit
GAACTAATCCTTGGACTTATCCTTAGGATTAGGGCTTCTGATCCTTCCCT10.9523809523809524No Hit
AAATTATGGTGATGATTAAACGGAAACGTTTGCACCGGTTGCAAAGCTTG10.9523809523809524No Hit
ATATATACTTGAATGTCCATGTTTATCTGCAAGAGACTCAGACCAAAGTC10.9523809523809524No Hit
GGTATGAGTTTACCTGAAGAAATTTCACCAAAAATATTCTCTTTAATCAA10.9523809523809524No Hit
AGGTTGTGCACAATATCAAGCTTTGCCTTGACTTCCGCCATCTGATTGTT10.9523809523809524No Hit
GCCTAGAGCAAAATGGTTAAAATGTGTCCCTTCTCCGTTGTAACTTTTGT10.9523809523809524No Hit
TTAATGGTGGGGTTATAAAACAGGATTATGGATACTATGCTGGTGGACAA10.9523809523809524No Hit
ATATAAATCTTAAAAATCAAGATAATTTTGCAAATTTCATGTATGCATCT10.9523809523809524No Hit
ATTCTTTGGAGAAGTCATGGTGTGGACATTGTCTTGTGTAGTCTGTGAAT10.9523809523809524No Hit
CTATTTACATTTCTTGCATATATGTTTACAGATGCGTAAATTAGTTTCAA10.9523809523809524No Hit
ACAAACAGGTGTACCAAAATCAATATTAGCAATTGTCCATTTTGNAAANC10.9523809523809524No Hit
CACCAAGTTTAAGGCCAATCTCTCCTCTACCAAAGCCGCAAGTGAACCGG10.9523809523809524No Hit
TGTTGATAGCACTCATTATCTATGAAGAGCTTCAAATTCGGAGAAGAACC10.9523809523809524No Hit
GCGTGCGGGTATGATAATCCGTTCCACGCCGGTTTCGGAGCCCACACGGC10.9523809523809524No Hit
TCCATCATCCCAGCGTGTGAGTGAGCCATTGGTTCCGTTTACAAGGCGTG10.9523809523809524No Hit
GACATAATCATATACAATAAATAAATCAAACCTATCCAAAGAGAAAAAAT10.9523809523809524No Hit
AGTTTCAGCAGTTCAAAATGTTCCCCAAAGTTTGCGAGGAAGCTCCAGTT10.9523809523809524No Hit
GGAAACATGGTGGAAACATGTTTCCTAAAATCCGTAATTTGGAAACACAA10.9523809523809524No Hit
CCTACTCTCACTGCGACATTCTCTAGCAAGCCATGGGGAACTCTGATGGT10.9523809523809524No Hit
ATCTTTACTGCATCAACGAAAGGGAGTCTTAGTTGAATATCACCAACGAT10.9523809523809524No Hit
AATATATGTACACACACAAAAACATGCACGGGTTAGAAAACTAACCAGAA10.9523809523809524No Hit
GTGTCTTCCTCATATTGTGGTTGGCTTTCAGCCTTGATCTTGGGCCTTGC10.9523809523809524No Hit
GGAGTACTAACCGGTTTACAACCTAGCATTCCCAACTCATCAATATTGTC10.9523809523809524No Hit
GTTATATAGTAAAAATGAATTATTTGCAAAAGCTAAAAAAACAAAAGAAA10.9523809523809524No Hit
TAATAACTCCCACTATTTATATTAATGAAAAGTTATTAATATCACATCTT10.9523809523809524No Hit
TATCTTTTACTGAGCTCTTAAATCTTTTCAGAGGCACTTGAAAGCTATTT10.9523809523809524No Hit
CTTCAATATCTTTCTCATAGCAAGAAACCATTGCTTTAAGCTCTCCAATC10.9523809523809524No Hit
ACAAAACACCGATACGATGCCTACTGGGGTACAAATCTCCATTTATTATT10.9523809523809524No Hit
ATCTCAAGGGATAAACAACACTATTGTGGTTTTTGGTTTTTCTTTGAAAA10.9523809523809524No Hit
ATATTTATCATCTCCTGAATCTAAACCTCAAATCTGAGGATATGAACATG10.9523809523809524No Hit
CGATATCAGTCAAGCGAAGGACTTATCTCAGAAAAGTAAAAGCTGCGAAG10.9523809523809524No Hit
TTACTGGATTACGACCCAATAACATATTGGCGATTTTTAAGCCCACACAT10.9523809523809524No Hit
TTCCAAAGGAACTGGAGTTACATCTCTTTTCCATTTCCATTCAAGAGTTC10.9523809523809524No Hit
GTATTTTAAGTGACCATGAAAGCGCATTTCGAGCCCCTAAGGGAGATAAC10.9523809523809524No Hit
ACACATGCATGTGTTTTAATGATCTAGAAAACGTTATTTATGTGGTGTCA10.9523809523809524No Hit
CTCGTAGGCTCGTAATGCAGTCGATATATCGGCAAATGAACGAGAAATGA10.9523809523809524No Hit
GATACATCAGCGGGTACGTTAGAATGGGCATTGTCAAACCTTTTGAAGCA10.9523809523809524No Hit
CCTTTGCAGAGGCCTTACTCGACCTTCGGGATAGAGTGTTTCCGACAGGA10.9523809523809524No Hit
TCTCTCTACTCTATTATAAGCTGGAGAGAGCTTTCTTTTTTTCTTCTTCT10.9523809523809524No Hit
GAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACG10.9523809523809524No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)