FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_049.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_049.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length151
%GC51

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTATGGGCTAGTACCAAGATCGAGTCCGAGACAGGCGGACCTTATTTTA21.3888888888888888No Hit
AACTCACTCAGATGAATTTAGATTTCGATGATATCGAATGAAATAAATAT21.3888888888888888No Hit
CGTGTCATCTCTCTTTCCTTTACTTGCCAACCGAATTATACGATAACACG21.3888888888888888No Hit
CATTTAAACTTCACATTGTTGTGTGTGTGTTATTTAAAAAAACTTCGCAT21.3888888888888888No Hit
GGTTCACTGACCTCAAAACCCACATCGATTGCTCTTATGATGATTTGAAC21.3888888888888888No Hit
AGCATACCGCATGCTTATTATGTCCCGGGCAGGCTCAAACTCACAAAGGT10.6944444444444444No Hit
CTCATACCCCAAATCACACTCCTAAATATAACCGAACTAAAAATAAAGCG10.6944444444444444No Hit
ATTATCTACCACTCATGAACCATGAATCATGAGGTTCACTTGATCCGAAA10.6944444444444444No Hit
GTATTTTGATTGTTTTTCGGTTGTTGTGTTGTTTGTTATGTATTGATTAT10.6944444444444444No Hit
TTTCTTCTGCAGTCTTGGCTCGTTTATAGTCTGAAAAATTGCTCCACAAA10.6944444444444444No Hit
GTAGTGTTAGGGGAGGAAGCCGGTCTGGCAAGTCAGCGGTACCAAGCAGG10.6944444444444444No Hit
GGTGGTGGGCCGTGGGTGCGCGTGGGCGGGGCCGGTTGGTCGGGGTGTGG10.6944444444444444No Hit
GTGGCGGGGGGGGGCGGGGCGGGGGGCGGGGGGGGGTGGGGGGGGGGGGG10.6944444444444444No Hit
ACTTTAAAGTTTGGTTTGGTTTTAATTGGGATTGGCTAACTTTCTGGTTT10.6944444444444444No Hit
CTATACTCGTCGATGTTCATTAAGTTCATCACATTTTGAGGTTTGAGAAG10.6944444444444444No Hit
GTATTATCCAATTGTTCGATATCTATCAAACGTGCCAAAGGTTTCAAGCT10.6944444444444444No Hit
TTTTCTATGCTTTGTTTTCTAATAATATATACGACAATTTCATCCTTTCT10.6944444444444444No Hit
AGTGAAGATGGGACATGAAGGACTTTGACCTCTCCGATGGCAAGTTTTTC10.6944444444444444No Hit
ATAATACACAATTTAATCAAATAAGAAATAACAAACGTACAATATTGTAC10.6944444444444444No Hit
ATTATACTTTGCGTGACTATTCCTGCTAATTGTTTTTGGTTAGTTCTTTT10.6944444444444444No Hit
GCACTGGGGTGAGAAACATTGGTCACAAGTAGTCGTGACCGGGGCTGGCC10.6944444444444444No Hit
CAAATGAATTATTATTAAAAAACTAATCCACATATATGCCAATAAATTAC10.6944444444444444No Hit
GATCATAGGCTATCACATATGAAAACCTTAAGCTTTTCTGGGTTTCGGAC10.6944444444444444No Hit
GTTGAAATAAGGTTGGGAATCAATGATATGAAGATCTCTTCAATAGAGAT10.6944444444444444No Hit
GTCACTTAGTTTGTTGATGACATTACCAAGAATCATTAAGCTTTTATTAA10.6944444444444444No Hit
ACTTACGATGAACTTGGAGACAAGAAGATCTTCCTTCTTGTCTCCAAGTT10.6944444444444444No Hit
GGTAATTCTATCTAGATATCATAACTGTATAGGAGGAGATAACATCAAAA10.6944444444444444No Hit
GAATATTATTGCTGACAACCTTATACAAGATTTAGATTTTTTGATAATTT10.6944444444444444No Hit
ATCGGGCGCTGGGGGGGGGGCGGGCGGGCGGGCGCGGGGGCGGGCGCGGC10.6944444444444444No Hit
ATAGTGTATATTCAGAAGATGTTCATGTCAGAACAGCCTGCTCAGCTGTT10.6944444444444444No Hit
GACATTGACTAAAGTCAAACGGTCGTTACCAGAATCAATGGCCGGGATAA10.6944444444444444No Hit
CCCTTGGGTCGTTCTCCCCTCCGTTTGGGGTATCCATTGTGGGGGTTACT10.6944444444444444No Hit
GATTGAATGATTGAGGAACCAAAACTGTGATTGTCAGTGACAGTATTTAA10.6944444444444444No Hit
CCTTTAACTCAATCATCCGTAAATGATTTTAAGGATTTTTAATAAATGAG10.6944444444444444No Hit
GCATAAAATAGCATATACATCAGGAGTTCACCCCCATTCTTATTGGAGCT10.6944444444444444No Hit
GTATATTCTCATAACACTATGTAACTATGCAGAATACGGATACTCAATGA10.6944444444444444No Hit
TTTTAATATTAACTATTTCTATTTTTAAAAGTTAAAGATTCAAAACTTGA10.6944444444444444No Hit
CCTCAATGGTGGTAGTCAGGGGCAGCACGAGCAATGTCTGTTTTTTTTTT10.6944444444444444No Hit
GGGGGGGGGGTGGGCCGGGTCTGGTGGGGGGGGGGCCGGGGGGGGTGGGT10.6944444444444444No Hit
AGGGGGGGGGCGGTGGCGGCGGGGGGGGGGGGGGGGGGTGGGGGGGGGGG10.6944444444444444No Hit
AAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTT10.6944444444444444No Hit
GGTCTATCAATCTGTCTATATAAATAAATGAGCTACACGATCCAGTATAC10.6944444444444444No Hit
CGTTCGAGGGGGTCGGTGGGGGGGGCCGCGTGGTGTGTGGGGGGCTCGGG10.6944444444444444No Hit
CTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATCAA10.6944444444444444No Hit
GGGGAGGGCGGGGGCGTAGGGGGCGGTCGGGTGGGGCGCCCGCCGGGGGG10.6944444444444444No Hit
TTGTGGGGCGTCGGGTGCCCGGTGGTCGTCGGGCGTGGGTGGGGGGGGTC10.6944444444444444No Hit
CTAATTACCTACAATTTACCAAGGCATTAGTGCGAAAGAAGAAATGTCAA10.6944444444444444No Hit
GTCAGATGGAGGGCATCCCAAATTGATTGAAGGGGATGAGAGTTTATCAT10.6944444444444444No Hit
CCAATGTTGTTAGGTGTTGTGTGTTAGTGTCGTTGTTGGGTTTGGGGGTG10.6944444444444444No Hit
CCGTCGGGGGTGGTACGTTGGCCTCCCGCGATCATGCCTAGTGGCGGGTC10.6944444444444444No Hit
TATCTATAATTAGGAAAGGAGGGAATATGTTTTAACTCTAAAATGGAGTT10.6944444444444444No Hit
GTGCGAGGGGGGGTGGGGGGGGTGGTCGGGCGGGGGGTGGGCGGGGGGGG10.6944444444444444No Hit
AATGGTGGGTGGGGGNGGGGCGCGTGGGGGGGGGGGGGGGGGGGGGGGCG10.6944444444444444No Hit
ATGTTTGGTTCGTGTTAGGCGCTCCGGGAGGTGGCGCGGTGGGGGGGGGG10.6944444444444444No Hit
GTTGGGTGGGGGTTGTTNGGGGGGGGGGGGGGGGGGGGTGGGGGGTTGGG10.6944444444444444No Hit
GAGCACGGCTGTCATTCTGGGGTGACGGAGGGAGCGTTCCGTTCGGGGGT10.6944444444444444No Hit
GTGGAAAACACCTATGGCTATTTTACTAAAAGCAACATAGGCAGAGATTG10.6944444444444444No Hit
AGAGTAGACAAGTAAAGAAGTAACGGAACCATGAAATTGACATATACTAT10.6944444444444444No Hit
AGTTAATTTAGATGAAATCATAGGATTTTTTGATTCATCAGATAAAGGAA10.6944444444444444No Hit
GCTTTGGGGTAGTCCTCATGGAGCTCATCTCTGGTCAAAAGGCATTGTGC10.6944444444444444No Hit
GTGGGAGTTCTTGACGAGAGATTGTAGTATGAATTCTACGTTAAAAACAA10.6944444444444444No Hit
TCATAAAGACTATGTATTCTCTCTTGTATCGATTAAGAAGAGAGTTTTGG10.6944444444444444No Hit
TCACTGACTACTCAACTCAGCCTGTATACAACATACAACACTTTGTCTTT10.6944444444444444No Hit
GGATAGCGATAGCGGACTCAAAGCTATGGAACTTGGGGATGGGTCTTTTG10.6944444444444444No Hit
GTATAAGACACTGCCTGTGAACACGGGGAACCTATACAGACACATCACAA10.6944444444444444No Hit
GGGGGGGTGTGGGGTGCGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGT10.6944444444444444No Hit
CTCGAGTGATATGGTTGAGTGAGCCTGTCTGAGAGTGCTTCACTCGAGTG10.6944444444444444No Hit
TATATACACTTGACTAAACCACAAAACCAATAAATCACTATACATGTAAA10.6944444444444444No Hit
GCGGATGAGCCTGATCACGTGCGGGGTTTCGAGGAGTGCCGAGGTGGGTT10.6944444444444444No Hit
CATTTTTAATCTCTAGCGGAAGTCCACCACTTTGCTCCATCATCTAGATC10.6944444444444444No Hit
CGGTGCAGTCGGGGCGGGGGGGGCGGGGGGCGTCTGCTGGGGGGGGGGGG10.6944444444444444No Hit
CGATTTTAGGTGCGGGCTGTTTTGTTGGGTCGGTGTGTGAGTGTTGGTGT10.6944444444444444No Hit
GAACAACTACAGTGAACGATTACTAAGCAAGCTGTGAACTATGGGGAAAA10.6944444444444444No Hit
CCACAAGACCCATCACGATGCATTGCGATAATCAAGCTGCTATACACATT10.6944444444444444No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGG10.6944444444444444No Hit
ACCATAAGATCGATTATATAAACGGGTAAGTGTTCCTTTCCATTATGGAT10.6944444444444444No Hit
ACCCCAAATACAGCAACATCAAAAAATATTAATATAAAAACAACAGACTC10.6944444444444444No Hit
GGATTCTATATTTTGTGACTGAAAATATATATATAGATTTTTTTCGGAGT10.6944444444444444No Hit
GGGCTTGGGGGGGGGTGGTGGGTGGGGTGGTTTGGGGGGGGGGTGGGGGG10.6944444444444444No Hit
AGATTGCTCCTTCGGGGATGGGCGTGGGGCCTGGGGGGGGTGGGGTGGGG10.6944444444444444No Hit
ATCACTAAACAGGTGTCGAGTAGTTCGAAGAGGAAAGGATAGTATTGGTG10.6944444444444444No Hit
GTTATGTATTTTTTACCACCCGATTAATCTTACAAGATAAGTATAATATT10.6944444444444444No Hit
GCTGTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGC10.6944444444444444No Hit
GATTCAAGGGGGGATCATGGGGAGCGGGTCGCGGAGCCTGTCGGGGTGGC10.6944444444444444No Hit
GTATTCAGCTAGTGAGGCTTCGGCATCTCGTTCCAGAAATGTCACTATGG10.6944444444444444No Hit
ATTATAGAGTAGGATATAGAGTTAGATTGGAGATGATTTTACTCTATAAT10.6944444444444444No Hit
CTTAAGAGAGGTATGTGGGAATTCGTCCATTATAGCGTTTTTCTAGATCT10.6944444444444444No Hit
CTTCTCAAATCCGTTTTGTAAAGAAATAATAAAAAAATAAAGAAAAATTG10.6944444444444444No Hit
GGGCGCGGTGGTTGGGTGCGGGGTGCGGGGGGGGTGGGGGGGGGGGGGGG10.6944444444444444No Hit
AGGGGGGGCGTTGGTGGGGTGGGCGTGGGGGGGGTGGTGGGGGTGGTGGC10.6944444444444444No Hit
TTCTTGGGCTGGTCATCAAGTACATGTATCTTTACCGTTTCAGCAGGGTC10.6944444444444444No Hit
GGGTTCAGCGTCGCCATGAAAGCGTTGAACAGGATCTGCTTGCCGCCGGT10.6944444444444444No Hit
AGTCCCGGGGGCGGGGGCGCGGGGCGGGGGCCGTGGGGGGGGGGGGCGGG10.6944444444444444No Hit
GGTATGATAAGAGGATGGAGTGTTGGTTTGTTACTAGATGAACATTGTCA10.6944444444444444No Hit
GGGTGGCGCGGGGGGGGTGGGGGGGCGGGGGGGGGGGGGGGGGGGGGCGT10.6944444444444444No Hit
ATTGTGTATTGATAAGACCATTCACTATTTCNTGAAGCTCAATCTCTCCC10.6944444444444444No Hit
GATTTTATACANTACAATTANATAGNACATTAGATGTTCAGGGTGTATAA10.6944444444444444No Hit
AGCTTTTCTCGGTTTCGGACCCCAGCCATGATCACCATGTGTGAGTAGTA10.6944444444444444No Hit
CAAGAAAAAAAATCAAGATAAATAGAAAAATCTTTCTAGTTATTTCTTTC10.6944444444444444No Hit
CTCTGGGACCGCTCCTCCATCTCCAAACTCGTCTTGATGGCTCGGATGTA10.6944444444444444No Hit
ACTTCAGATTGTTCATTCAAAACTTTTTCCTTAGATACATAAATCAGCAT10.6944444444444444No Hit
TCCCTATCTAAATAGAAATTCAAAAAAGTAGTAGGGCAGATTATATAGAT10.6944444444444444No Hit
GCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCG10.6944444444444444No Hit
GGACTGGACGGGGGGGGGCGTGGGTGTGGTTGCTTTGGGGGGGCGGGGGG10.6944444444444444No Hit
AGAATTTTGTAATAAGAGAGAAGAGTTTATCAAATGTTCCAAAGAGCTTA10.6944444444444444No Hit
GTTTACATATGCTTTACTCTTATTGGTCTATAATAAATTTTTTTATTAAT10.6944444444444444No Hit
AACGTAGCCATCCCTTTTCCTTTCCTATCCACCGAGTCTTCACTTCTCAC10.6944444444444444No Hit
TTCTAGTCTCAGATTCGACACTCAGTCGAGATCCGGATAATCAGATATGT10.6944444444444444No Hit
GCGGGGGGCGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCC10.6944444444444444No Hit
CCACGGGGGGTTGGGGGGCAATGGGGGGAGCTGGGGGACGGGGTCGGGGG10.6944444444444444No Hit
ATCTATTACGACATCATGTATAAGCCGGCGTTATGATTGGCGGGTGTACG10.6944444444444444No Hit
ATATAAATTGAATACAAAAAAATCGGGCGAGGGTAGGCTCATTACATGAA10.6944444444444444No Hit
TTATTAGGCTTGGGTGTTGGGTGTGGGGGGAGTGGGGGGTGTTGGGAGGG10.6944444444444444No Hit
ATTTTGGCGCCGTTGCCGGGGACTCCAAATTGACCATTCGATTCCAGTTA10.6944444444444444No Hit
CAGTTAGCATAACTGAGGGGAAGAACAAAATCACCTTATATTTTTATACT10.6944444444444444No Hit
ATTCNGGCATGAATTGATAAAGATCCAANAAGTCCAACATTGATTCCTTC10.6944444444444444No Hit
GGGGGGGGGCGGGGGGCGGGGGGGGCGTTGGGGGGGTGGGGGGTCGGGGT10.6944444444444444No Hit
CTTCCGGTCCTGTCGCTGACCATCATTTGGGGCTCCAGTACGATCCTGAG10.6944444444444444No Hit
TCCATGATGAGATCCATGAAAGACCTGAGCAATAAGATCAGCACACCCAA10.6944444444444444No Hit
GGTTGAATATCCAGTTTGCACAATCTGCTGAGAACACTAAACGCCCTGAT10.6944444444444444No Hit
ATTTTGTGGGGTGATGTGGGTTCTGGGTGGAACACAGGTGTGAGGTGTGG10.6944444444444444No Hit
ATATAAAGAATAATGAAAAAAAAAATAAAGCGTTTTTTTTTAGTGTAGAA10.6944444444444444No Hit
AAACTAAATCAAACTTATTGCATTGCTTTGAAAGTGTCTTTACAATCTCC10.6944444444444444No Hit
GCTTATAAGTGATCTTAGGGCTCAAAACGATAGATTACTTAAGAAAGTAC10.6944444444444444No Hit
GTTTAAAAGCTGGATTCAAAACAAAATATTTTTGTTTTGTTTAAATTTAA10.6944444444444444No Hit
GTTTATAAAACTTTAAACCCTATAAAAATTATATCCTAAATTTTAAAATA10.6944444444444444No Hit
GATTAGTAAAAATTTATATGTTTCGATGCAACAACAAGATGCTATTTGAA10.6944444444444444No Hit
ATTGAATGAACGTATCAGGTTGCTTTGGACGCCAGAGGATTCTATCAAGT10.6944444444444444No Hit
GCTGGGTGCTTTTGGGTCGTCGCGGGGGGTCATGTTTGGTGTTAAGGTTT10.6944444444444444No Hit
ATTTGGTACAGGATCTCTATCCCCGATCTTTGCACTATTTACGGGCTTGA10.6944444444444444No Hit
GACAAGGTATTGGCTGAGATTCCGTCAGATCTCCAGCTCAATATGACCAT10.6944444444444444No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGG10.6944444444444444No Hit
ATATCTGGTATTGGGTCATCGAAGAAAGGGAGAAAAATGGAAGANGAAGA10.6944444444444444No Hit
GCTGCGGTTTTCGGCGGCGGTGGGGCGCGCCCGCGGGCGGGGTGGGGGGG10.6944444444444444No Hit
TTGTTTATTTTTGAAACTCTAAACAGAGCCAAGGTGAGCAAGTATGGGGA10.6944444444444444No Hit
GGTAAAATGAAATGGTTGAATAATTGAAAAATGAGATTATTCAGGAATAC10.6944444444444444No Hit
TCATTCAACTGTCAGATTCAAATAGTTATTTCCTTTTGTAGCTCTGCCCT10.6944444444444444No Hit
CTTANATACTGACTCATCTTGTATACCANCATGTTTCGTACACCGACTCG10.6944444444444444No Hit
ACTAAATACTGCTGAATAAATGTGGGAAGATAAAACTGAACTAAAAAAAC10.6944444444444444No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)