FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_047.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_047.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTTTCATAGCTTCAACAAAATGAAGCCTTTCTTGAAGTTTAGAGTGTC21.6260162601626018No Hit
GGAAGGAAAGGAATGCAAGACTCCACATTGCCCCTCCTCGATCCTCTCTG10.8130081300813009No Hit
GTCAAACTTTGTTAATAATTCCTAAATCAACTATGCATGTAAAGTAAATT10.8130081300813009No Hit
CTTCACTATCACCAAGTCCTTGGCGCTATCAATGGTAACTGAATTAACCC10.8130081300813009No Hit
ATAGTGAAACCACGTGATGTCCGTGCCATCAAATTTTGCATCTTTTGATT10.8130081300813009No Hit
GTATTGTTCCACAAAGGCACGACCAACAACCTCAGCACCAGGGGAAGAGC10.8130081300813009No Hit
ATATATATCTTATTTAATTATTAAGAAGATAGGATGAATAATATAATTAC10.8130081300813009No Hit
CAATTATTTGCGTATTCAAAAGGGTTTTGTAGGTTTTATGGAGTATTGGA10.8130081300813009No Hit
GAAGAAATAAAATGCAAATACTTTATTGAAAGTTATGCAAGTTTACAAAA10.8130081300813009No Hit
GTTTATGTGTCCCATCCTGGTGTGCCATCTGCCACCCTCACTTATCTTTG10.8130081300813009No Hit
ATCACATTGTACCATATATACAATATCTCAATCAAGTTATTGCATATATG10.8130081300813009No Hit
ATTCATCCCGACACCCGAGATTACTATTCATCCCGACACCCGAGATTACT10.8130081300813009No Hit
CCAATAAGAATGGGGTGAACTCTGGATGTATATGATCCTTTATGCGATAT10.8130081300813009No Hit
CCTGATTTTCTATGGTGACGATGATCTCGATGTTTGAATTTGCAAAGGAG10.8130081300813009No Hit
ATGTTAACTAGATCTACTAAACATCGACCGTTTTTACAAGTGTGGTTGGA10.8130081300813009No Hit
GAATCTCTACACTGATTTTCGATCTTTCGTCTTTAGCAGTTTCTTGTCAA10.8130081300813009No Hit
CAGTGTGACAATGGACATATAGCTTGGTTTTCTTGCATTACTAAAATGAG10.8130081300813009No Hit
AATCTATGCTTCTTTTGTTAGCTTCATCTATTTCTATTGCTTGCTACACA10.8130081300813009No Hit
TGTCAAATACATCTCTCAGACCCTCCCCCAAACTCAAATTACACATTCTC10.8130081300813009No Hit
CCCTTTCTTATCATTGGGGTTCTTGGTTTTGTTCTTTGCATTGGTGGAAG10.8130081300813009No Hit
GTTCATCAGTATTATGGANAAAGAAAAAGAAGAACAAAACGTGGAAAAGA10.8130081300813009No Hit
ATATAACACCTAATATTTGCTTCTTCTTATTATTTTTTTCCTTTCAGGAG10.8130081300813009No Hit
TTCCAAACCATGTATATCTTGTGGGTGAATAATCTAGGGGTGGGTTTTAT10.8130081300813009No Hit
CTTTGAATCTTTAGGGATGGTGAAGCCGCACACCACAGTGGTTTGTGACG10.8130081300813009No Hit
AATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGT10.8130081300813009No Hit
ACATGAAACCGTAAGCTCCAATCCAGTGGGAGTAGCCCTGGGCTCTGACC10.8130081300813009No Hit
GTGTGGAACGACGGCGTTTTGTTCTGATGAACCTGGATTATTTTAGTCCT10.8130081300813009No Hit
GTTATTTGAAATTTTTAGACTATATCCGCGATTCCTCTCAATTTTTAATC10.8130081300813009No Hit
CTGCAATGGTGAACATATAGCTATATATCTAAGAACAAGTCAGGGATGAA10.8130081300813009No Hit
CATCATATCATTACATTTTTGGTTTTATCAGCTTTCAAATAATTAAAAAG10.8130081300813009No Hit
CTTCTATGTTGCGCCAGGTGCTGCTTTGGACCACATGAAAATCATACAAG10.8130081300813009No Hit
ATCAAGAACCTATCTGTAGCAACTAAGAACCAGTGAAAAACAACAACAAA10.8130081300813009No Hit
CGTTTTACACATCATTGGATTTTGGAGACATCCTGGTTCGACCACGCATG10.8130081300813009No Hit
CTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG10.8130081300813009No Hit
GAGCAAAATTCCCCTGAGATTGATCGATCCGAAGGAGGGATCGATCGATC10.8130081300813009No Hit
ATATTTTACCATAAAAAGCAGATTACCCCCTAATATATATATTAATATTT10.8130081300813009No Hit
GGATAGCGCTCCTATTCTCCTAAATGAGTGCTTGGTGATCAATTCAAGAA10.8130081300813009No Hit
CTTAAAAAATACCTAGATAAAAATATTAAGAAAAAAAAAAAAAAAAAAAA10.8130081300813009No Hit
ATATATTTTTATGATTTCTTACTCACTATTTGCATCAACTTTAATCCAAA10.8130081300813009No Hit
GACTAACATCCCACCCGGATGATGTTCCTCATTACCTTGGTCGTCTTCAT10.8130081300813009No Hit
GCGTATGGCATCGCCACTCCCTTTGGCAGCATCCACTAATGCGGAACTTA10.8130081300813009No Hit
GTTTGCATACAATGCATCAATCTTAGCATTGAAGTCACAGTCATCTTCTG10.8130081300813009No Hit
AAGGAGAAAAGACTATATTGTCTAAATATAGATAACACAAAACGATCTCA10.8130081300813009No Hit
ACATTTTACTGTTTTAGATAAAAATCTCAAGAAGTTGACAAAAATATTTT10.8130081300813009No Hit
AAAAATAACTCAATATTGGAGTACGAAAGAATAGAATAATAAATGTCTTT10.8130081300813009No Hit
CATTAGCTGTTATTTGCGCCGACATGGCCATATGCAGCTAATGANTTCTT10.8130081300813009No Hit
GCCTTTTGATTCTGGCTAATCTGGTAGTGCAAAAAGTTACAGTTTTGTCT10.8130081300813009No Hit
GCGATCTGGACGGATTCATCAGATTCTGATATTCTCAACCGATTTGTGCG10.8130081300813009No Hit
ATATTATATATTCAAATTTAAAAGTAATGTTCACGTTCTTAATTTATTTA10.8130081300813009No Hit
ATTTTATATAATGCAGATAAGAATTGTTGTCTGCTTGTGAGGATATATAT10.8130081300813009No Hit
GTGTAATCATGGGTTTGAAAAAATTCTATACTACTATGGGTATCAATACG10.8130081300813009No Hit
ACTTTTGACACAATTATATGAATTCAGCCCAATTTCCAATTGCCCCGTAA10.8130081300813009No Hit
TCCAAATATTTTTACGAATACGCTTTTTCGAGATAGAAGTACGTTTTTTT10.8130081300813009No Hit
CTCATCGCTTGTTATAATCTTTCTTTATTATTGTTATTTTTAACATAAAG10.8130081300813009No Hit
CTATAACTCACTCCATTAAGTTCACCACCATAAAACTCAACAGTTACACC10.8130081300813009No Hit
ATATTATATATAATTATCCTCAAATCATCAAAATTAATTTTGCTACCCAT10.8130081300813009No Hit
GAGTACACATTAAGCAACTCATTCACCAGGCAGTGAAGTATGTGACCTTT10.8130081300813009No Hit
ACTTGACTCTCTTAAGCTCTATAACCTTCTTCTTGAGATATTCAACCTCT10.8130081300813009No Hit
TACTCCATCCATCTGAATTCTGACAAAGTCAAGCTAATGACTGAAAATAA10.8130081300813009No Hit
ATACTTGGCAACAAGTTTTAGCGTTTAGTCGTTGTGTACATGAGAATCTT10.8130081300813009No Hit
GGTTTTACGCCCTTGACAACCCCTGAAATCGTGAGATCTTCTATTGTTGA10.8130081300813009No Hit
ATATAACAGATTATAGATACGTAACAACATATCTTATAGTTGGAAATCAT10.8130081300813009No Hit
ATATATTGGTTNGGAATCAAATTGACTTAATAAGTAAGAAAAATGTGGGT10.8130081300813009No Hit
CACGAAGCATTCCCAGTTTGACGGAGGATTGATTGAGCCTGACCGAGCAT10.8130081300813009No Hit
CATATCAAGCTCCTTAAGCACTTAGGATGGCCAACATGCCCGACGACTGT10.8130081300813009No Hit
AATGAGGCAAGCCTCCGTATTAAAGAATGAAGAAGCTACATTCGTCCTAG10.8130081300813009No Hit
CTCTTGTCTTCTTTGGCTTCGTCATAACTCTGTGCAGTTCTGTGGGAATC10.8130081300813009No Hit
ACATATTTCCTTGGTAGTTTGTTGATGTCTAAGGAATATGTTTCCGAACC10.8130081300813009No Hit
ATTCATAACTAACAGAAGTCATATTCAATCTCCATTCACACTTTCGAACA10.8130081300813009No Hit
CTTAAAATGAACTCCTCAACCACTAAATCACAACCAGTTAGTTTCATTTT10.8130081300813009No Hit
CATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGT10.8130081300813009No Hit
TTTTTATATTGTGCTGAGATCATTAATGAGTCAGCATACTAGCTTCATCA10.8130081300813009No Hit
CCATGTACATCAATCCTACTAAAAACTGCACCAATAATCAACTCAAACTA10.8130081300813009No Hit
ATCCAAGAGGATTCCAGAAGGTGTCTTAGAAGATGTTCCAGTGAAAATTG10.8130081300813009No Hit
GCGCTGCTGTGTAAGATGGAGGCCAACAAGATGAGGCAGAGTGAGTTGAT10.8130081300813009No Hit
TTATATAATAGAGATATATTTTATGTAAAATATTTTTGTGGTATTTTTTT10.8130081300813009No Hit
TTCAAGTGAAGTATCAAGATGAGAGTGCTTGTTTCTTCCAAGGTTTTGCG10.8130081300813009No Hit
TATCTGGAGTTCAGTATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGA10.8130081300813009No Hit
CGTCTTTCCTCAATTTTAACAAGTACTGCATGCATCATATATATATGCAG10.8130081300813009No Hit
CTATTATACAAGTATGATATAGATAGACATAGTTACGGATGTCTAAGCAG10.8130081300813009No Hit
TTATTGGCTGGGAATTTATCTTTCAATAGAGCTAGGGTATCCTTGGAAGT10.8130081300813009No Hit
TCTACAACTTCNTTTTTTAAAAATCGAAATGTGATAGTCTAGTAATATTT10.8130081300813009No Hit
GAAGTTGTGTTTGTTGCAGGTCAACCTTTGGGTTATTACGGCTCCTGGGC10.8130081300813009No Hit
ATATAGAATGAGAACTACATGTTTAAACTTACATGACCATTCCACTATGT10.8130081300813009No Hit
GATAAAATCTGTCTAGATGTCTTTCCAAGTGGTTAAATATCCTGGTTGTA10.8130081300813009No Hit
ATATATCTTTATCTTCTTCTTCATCATCAGTGTTATTGTCATCTTAATTA10.8130081300813009No Hit
GGTCTGAAAAAGTATCTAAAAATATCAAATTTAGATATTTGTACCCTGTC10.8130081300813009No Hit
ACAATCACCAGTATTGGTTTCGTCGATCGTGTCTTTGTCTTCTTGTGTAC10.8130081300813009No Hit
GAGTTTTGGCCCCAGAGAACAAAAATCCCGAAAGGAAATGTAGTATAAGC10.8130081300813009No Hit
AGTATATACAATAGATAAACTCGGCTCAACCCTTTTAGTAAAAAAAAAGA10.8130081300813009No Hit
ATATATATCGTATTATATAAAAATGAATGATTCAGAGTTAGTAATTCACC10.8130081300813009No Hit
CCTGTGAATTGCGCAAAAGTAGGATACTAAAAATTCGAGGGTCCAAGAGT10.8130081300813009No Hit
GATTCCACATAGTGATCATTTTGAACTAAAATAAAACTTTTTGGTGGAAA10.8130081300813009No Hit
GAATAGGAGCTTGAATGAGATTCTTGGTTCTGCATCCTCTTTCCCTTCTC10.8130081300813009No Hit
TTATAAAATGGTTCTTGGGGTATGGTTTCATATGGATGGCTGCGTCCGGA10.8130081300813009No Hit
ATCTACTATTATCTAAAAATAATCAAGTTATTAATGACTGGACGAAACCA10.8130081300813009No Hit
GAATATTCTAAGCAAGGTTTAAAGTCTCTCTTCTTGAAGCCTTTGCTGTA10.8130081300813009No Hit
ATCTAATAGATGGTCACATGTTTGTCCATTGACAACATGAAATACGGCTT10.8130081300813009No Hit
CTATTCTATTAATCCGCTCATTGACATTTGTGTCTTACCTACGAAAACAA10.8130081300813009No Hit
TTTAATGACTTAATGATGAGGAACGCATTTTGGCTATGCTACTAATACTT10.8130081300813009No Hit
GTTTGCAGTTGACCCGCTTGACCACAAGTTCTTGGAGCTATAGGACCTGT10.8130081300813009No Hit
GATTTTTCCTAATTTTGGATAAAAGTAGTCTCTCAAGTAATAAAAACACT10.8130081300813009No Hit
GGCGCGAAGTACAGCATAGCGTGATCCTTCTTGATACGGAAAGACATGTC10.8130081300813009No Hit
ATGCTAACTAGGGATTATGTAAACTATGCTTTTCAGCTCGATCAGCAAGC10.8130081300813009No Hit
TCTCTTCACCNTCTGTTTAGCATGAGGTTCTGATTCCAAAAGAAACATCT10.8130081300813009No Hit
AGTACTCTCTTTCGGATCCCGGAAACAGCTCTCAGAGATCTTTTTTCCTT10.8130081300813009No Hit
TCATAGTAGAGTGCATCCGTATACTACCTGTCCTTGAACCCCCATTTGCA10.8130081300813009No Hit
ACGTCTAGCTCATGACTTTAAACAAGCGCTTAGTGAGAGGCAACCCACTC10.8130081300813009No Hit
ATTAAGCAATGTTTGTCACTTTTTATTGAATCATATATTCTCTATTTTAA10.8130081300813009No Hit
GGGTTAGGGTAGCTTCTCTCTGTTTTGTTATTGCTTAGATAGGTTGATCA10.8130081300813009No Hit
GCTATTTTGGAAGCGAACGAAAAGGATGAGGAGATCGGTTGGGATTACGG10.8130081300813009No Hit
ACATAGGAGGTTAAACCAAGATATTCACAGAGCATGTCCAAGTTAGTAGA10.8130081300813009No Hit
TCCCATTAGTCTATATATATATATATCTCGTACTATTTGAATATGATGCA10.8130081300813009No Hit
GCCATCCTAAGGTGCTGCTAAATGGAAAGATCTTATCAACGTCCATGAAT10.8130081300813009No Hit
CCCTCTAGGAGTATTTTAGTGATAGGTTCTATAGGAACCGGACGATCCTA10.8130081300813009No Hit
CTTCATAACTCTGTGGAATCCATTGAGCATCTATTTCCCCAAGGAAGGCT10.8130081300813009No Hit
GGTATGAATGGATTATTATATTATATTATTAATCTCTTCTAATTACATTT10.8130081300813009No Hit
TGATAGTACATCAAACCACTTATACGGATTTGTCTTTGATATGTTTTTTT10.8130081300813009No Hit
ACTGAACTCCGAAAACCCTAGAATTGCGTACTTTTATGTTGTTGACACTC10.8130081300813009No Hit
GGAATAATCGACAACACATTATTATTATTCACTTAAAATTCATTATATTT10.8130081300813009No Hit
TCTGTATGTTTTTTTTCCTTTCGTTCTGTCGGGTGGAGTTTGTGGGTCTT10.8130081300813009No Hit
TAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGA10.8130081300813009No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)