FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_040.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_040.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72
Sequences flagged as poor quality0
Sequence length151
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCATAAATAGCCATTCCCGAAATTACCCATCCACCAGGAGAGTTTAT11.3888888888888888No Hit
GGGGGGGGGGGCGGGGGGNTGGGTGGGGGGGGGGGGGGGGGGGGGGGGGG11.3888888888888888No Hit
GCATAAACAGAGATTTTCTTCTGTGACCTGTGCTTTGTTCCCCTGTGCTT11.3888888888888888No Hit
GGAAAATATATTATACTTATAGTAAAACAAAAAAAAAAAAAAATCAAACA11.3888888888888888No Hit
TGTATATGTTTCAAACATGTACCCGCGCTTCCTAATAGTTATTTAAAAGT11.3888888888888888No Hit
ACAGTCTGTATGTGAATGTCACAACAGAAATGTATCGATAGAAATCAAAA11.3888888888888888No Hit
CCATTAGACAGACTTTTTCGGGGGTTTAGAGTACAATAGCTTGAGGGTGG11.3888888888888888No Hit
CAATTGGATAGCGAAGTACAACGGAGAGTTGTATGATTCGTACGTGAATG11.3888888888888888No Hit
TAATAAAAAAAAAAAATACACATAAAATCAAATCATAAACGAATCAAAAA11.3888888888888888No Hit
GAACATCCTTAGAACAACCTTGGCATCATTCGTAGGACTTGCGACCCCTT11.3888888888888888No Hit
ACACATGACATCAAGTCAAATTCGACTCCAAAACACTAACCAACCTTCTT11.3888888888888888No Hit
AGGGTGTTGAGAGGTTGTTTGGAGCAAAGCAGTGTAAATACTGTTTACTA11.3888888888888888No Hit
TATATAAGCAGCAGTTTAGTGTATAAGCAATTCTTTAGTGGCTGCACCGA11.3888888888888888No Hit
AAAATAAAAACAATTATAAAAAAAAACAAGAATAATAAAATCAAAATACA11.3888888888888888No Hit
CATCTAATCTGAGACGACACTTTAAACAACAAATAAACAACAAAACTTAA11.3888888888888888No Hit
AATCTATTAATGATTCAATATTTCGCTCTGAGTGGCCTTTTTTATTTTCA11.3888888888888888No Hit
ATGCAATGCTTNTGAACCTTACTTACAACTTTAGCCATTCTCATCAAAAG11.3888888888888888No Hit
TATAATTTGTGTATAAGAATGACTTGAACGGTAGAAAATATATATGCAAA11.3888888888888888No Hit
AAATTACATATAAATACAAAATGTTTCAAAAAATTATAATAACAAGAATA11.3888888888888888No Hit
AGGTGATGGGAGTGGTTGTGCGGGGCAATGCGCGTCGTAATAGAAGCGCT11.3888888888888888No Hit
AAAACAATAATCTTGACTGCAAACAGATTACACACATTAAATAAACATTA11.3888888888888888No Hit
TAATCGAAAAAATAAAATTAAAAATAATCTTAATTCAAAAACACTTACAA11.3888888888888888No Hit
TAGGAATGTAGATTCAGATAAGTATTTATATATTTGGGGCAGAAATGGTA11.3888888888888888No Hit
ATATAGAGAGGGTAACATGTTACATGTATAAGGGCTCCATAAGAGAGAGA11.3888888888888888No Hit
AATATAAATTAAAGAGATTAAATAAATATGAATCTTCTAAAATTCTGAGA11.3888888888888888No Hit
CAAATTTAACAGTACAATAAACGAAATTAAACACGCCATCGAATTCATAA11.3888888888888888No Hit
GCCCAAGCTGTACTTCCATTGATGTAGGAGATGATTGGGAACACGTGGAT11.3888888888888888No Hit
ATATAAATATATCTATATTGATATTTATCTATTATTTCCATTTCTATATA11.3888888888888888No Hit
AATTAAAATGAGAAAGTTGATATACTGCTATATTCTATTAATTAATATTA11.3888888888888888No Hit
ATTTAAATCTCTGTGATTTTCCAGATCCCAATATTTATTTTAATTGATTT11.3888888888888888No Hit
GAAATGACCCGGCCAAATAGGGAAATCCCAATTCATTAGGCCTTTCGATA11.3888888888888888No Hit
ATACACATGCATGTGAGTCAAGAAAACAGATAAAACAAGTTAAAAGTAGT11.3888888888888888No Hit
GTGTGAACATTGCCTTGTGTAGTCTGTGAATCTTTTCCAGGCGTCTGATA11.3888888888888888No Hit
TTGGTTCATCCTGCTATGCCCCGGGCCTTTTGCTCTCCGTAAAAAAAAAG11.3888888888888888No Hit
TATATAAACAATAGAGTAATTCTACACTAATCAAAACCCAAACAAAAAAA11.3888888888888888No Hit
GAATAAATCTCAAAGAAATTTCGCTTTTTATGTATTGAAAAACTAGTGGG11.3888888888888888No Hit
AACAGAAAGTCCACAACTAGAGAGAGACATATAATGCCGGTCGAGCTCAT11.3888888888888888No Hit
ATGTTTGATGGCGTGGAGTACGAGAAGATGGTGTTTGATAAAGTGTTAAT11.3888888888888888No Hit
ATATATTGTTGTTGGCTCTCTTTTAATGACTAATCTACTTGCTTCTTGAA11.3888888888888888No Hit
GGGATATATAGGTGCTAATAGATGGTTCCTAGAAAGAACAGAAATATTTT11.3888888888888888No Hit
ATATACAGAGTCTGGAGTGGTTGCTTGAGCAGTAAGCAACCTAGTACAAC11.3888888888888888No Hit
TCTTCAATCTGATCTTTGCTCTCCTTGCTAAGTTCCAGAGGAACAATGAT11.3888888888888888No Hit
GATGTAAATCTGTTTAATTCAGAAAGTGAGATTGAGCTCGTTTGATTTTC11.3888888888888888No Hit
GTTTAGTGTTGAGGACTTTCGTGTATTGGTACTCAAATTGGATCAGGGAT11.3888888888888888No Hit
ATAAAGTTTTCAAAATGTAACAAAAACTTTATAAGACGATGAGAGTGAAT11.3888888888888888No Hit
TACTAATATAGTTACAACAGTAGTTGATATCTATATAATTGTGTTAAATG11.3888888888888888No Hit
ATATTTCCCTCTCTATATTCTGTTCATTCAAATGCAAAACCGGTAGAAAT11.3888888888888888No Hit
ATGATTAATTGGTTATATAATAACTAACTTTTGTTAGTAAAAGAAAAGAA11.3888888888888888No Hit
GGACTTGGATGTGCCAACTACGGGATGCGGTTAACCTTAGAGTCCTAGTT11.3888888888888888No Hit
ATATCACATGTTGAGGTTAAGCTCTACACGGTTATTCAAACCGTGGAGAA11.3888888888888888No Hit
ATCCTTCATCAGTGGTTGTGAATGACTGATTTTTCTCAATCTTTTCGACC11.3888888888888888No Hit
TGCTTCACCTGAAACACAATCTCTCTCTCTCAGACATTATTTCAATTCAT11.3888888888888888No Hit
ACCATATTTTTTCTTAAAAAAAAAAGATAAGAAATGGTTCCAAGTACTCT11.3888888888888888No Hit
GGGTAATTTTATCTGTTTAGTAATTCTGGTGTTCGATGTTCTACTGGTGG11.3888888888888888No Hit
AAGATATTGCTCATGTCAATTGAAGAGAGACAAAAGATTCCGTGTGTAGA11.3888888888888888No Hit
ATACAATAAAGATATACAAACAAGAACAAATCCTAAGGAAAAAGCTGAAA11.3888888888888888No Hit
CCGCATGTCGTGACGATATTTACGTCCTAAGCTCTGATTTTGGCAAACCG11.3888888888888888No Hit
GAATTTTATTTAAAACATCATGAAACCACAATTACACATTAAAATACCAA11.3888888888888888No Hit
TAATCAACCAGTCAATTCATTATGAAACTAATATAATCTCAACAAAAATT11.3888888888888888No Hit
TATGAATGTTCTATACTAAGTAAATTTATGTTTTAGCGTTTTTAGGGTTT11.3888888888888888No Hit
CAGAGCAACAAACTCAAACAAACGTGATCGTAATACTCGGTTATTTATTA11.3888888888888888No Hit
GTTCTATACGACATCGTTTCGGAGTCCATTTCTTCAGTGGCGTTNATAAT11.3888888888888888No Hit
TTACATAGGGATCCCTACGTCGTTACATTCCATTTAGGATTAGGAAAAGG11.3888888888888888No Hit
GGTCTATCCCCTGGCGGACGCCACGCTGGCCTGGGGGACGGCCTACACCG11.3888888888888888No Hit
GTCTCTGTTTCAACAAAAAAAATTTATAAAGATCAAAGAAATATTTCAAA11.3888888888888888No Hit
AGCCATTGTTGAAGGTTCACAGAATGGTAAGTTACAAAAAGAAACACCTT11.3888888888888888No Hit
GGTTAATAGCAATTTTAAAATTTCAATAAAATTATAGGGTTAATAACGAT11.3888888888888888No Hit
ATACAAGTGTAACATTTGTGATTCGAGCGAGACTATTCCCAAACAAAACA11.3888888888888888No Hit
CATTTATACAGATTGATACAAAGAATTATTAGATAAATAAAACAAAAGTT11.3888888888888888No Hit
ATAGCCGACAAAAAAAGGAAATATAAACGGACATTGTCAAAACTAAAGCA11.3888888888888888No Hit
ACATTGGGTGTGGCTGGCGTGGGCGGCGGGTTCCGGTCGGGGGGACGGGC11.3888888888888888No Hit
GATACTTCGACAATGGTCAGCATAGCTTAGTTGCAGAGGACTGAAAATCC11.3888888888888888No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)