FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_037.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_037.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACTTCGCCATCTCATGGCAATTATATGGTGACCCTCGAGGTGAAGTTG16.25No Hit
ATCGTCAGACATTTTCGTGGAATGGTGATATCCGGTCAGCTTGTAGTCGT16.25No Hit
ATGGGACCTCACACACTCCGGTAACCCCCTCTCGTGGTAAGGACCCCGCT16.25No Hit
TGATTAGACGTGTGAATAAAGACCACTAGGGGTGACAATAACGGCTAGCT16.25No Hit
GGTGTCGATTTATACAAAGATTGACAGTCTGTCAACAAAAGACTGAACAT16.25No Hit
TATGTATATTATAATAATTTAAAATAATTTGAAAATAATATCAACAAAAA16.25No Hit
CGGAAGATATCGGAGACAGCGGAGACATAGGCTGAGATAGAGGCGCGAAG16.25No Hit
GTCAATTACAAGACAGAATTGATTAAATATAGGCTTAATCGTTATAATAT16.25No Hit
TAGTCATATTGAGAAAAATGTCTGCATAAGGAACTGCACAAGGAACAAGT16.25No Hit
ACTTAGTACTGGTGCTACGGAAAGATAATTTTTTAGATATCGCATTAGAN16.25No Hit
GGGCGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGTGTCGGGGGGGGGG16.25No Hit
GTATTGAGCAAGATCAGAGAGAACTAGCGAGTGGAGCTACCGGTACCGTA16.25No Hit
ATAATATATATAAGAAATGGATTGATGAATTGGAAAGCACTGGGGATTAG16.25No Hit
GAATCTTGCTTACTCTGAATCCGGCTATCAATGATCTAATCAAGCATCTA16.25No Hit
CTTCAAATGTTACTCAACTTATGATGCTCCGAAACTTCCTTAAAACGTGT16.25No Hit
GCATCCGGGCAGGTTAATGCCATACAAAATCTACTTTGTGAAGGGGTTTG16.25No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)