FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_033.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_033.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCTTGGGCGCATTGGTCGAGTAGGAGGTCGAGTGGTCCGGTGAGAAGT22.898550724637681No Hit
TATATATATATTTGTATGCATATCTTGAGCTATATAACTGAAAANGAATA22.898550724637681No Hit
GTGTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.4492753623188406No Hit
GCGTGGTGGGTGGTGGGTGCGCGCGGTGGTGGGGTGGGGGGGGGTGGGGG11.4492753623188406No Hit
ACGACAGCCTTTGTGGTATCGTTGAGGAAGAAATGTAGCACGAATATTCT11.4492753623188406No Hit
GTTGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGTGGGGGGGG11.4492753623188406No Hit
TGTGTGGACGGGGGGTGGGTGGGTGCGGGTGTGCGGCTGGGCGCGCGTGG11.4492753623188406No Hit
AGGTGGTGGGGTGGCGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.4492753623188406No Hit
GCGCGTGGGCGCGGCGGTTGACAGGGCCGGGCGCTTGCGGGGGTGGGGGG11.4492753623188406No Hit
AAGGGGGGGCGGGGNGGCGGCCGGGCGGAGGGGGACGAAGGGAGGGCCGC11.4492753623188406No Hit
ATAACCACTAGGAGCAAGTCTACCCTGCAGAGTGAATAAAGATGTTAATT11.4492753623188406No Hit
ATGTCAAACCAAATGATAAAATAAAAAAAATCAAATCGAAGCAACACCCA11.4492753623188406No Hit
CATTTTTATGTTTGATTAATATAATTCTAGTATATGAGTTGTGGGGTAAA11.4492753623188406No Hit
TTAATATTTCCAAAGGAGTTGCAAAAGGATCCGCAGGTTCACCAATCATT11.4492753623188406No Hit
TCTATGTCTGGATATCACCACGGGTCGAATATTTATCTCAAGACACGTAC11.4492753623188406No Hit
CAGCATCTGCAGTTTCTAGTCCCTTTGTCGGCGAGGTAAAGATGCTCTTG11.4492753623188406No Hit
TCTTGAGATAATTAATGTTATTAATAGTATAAGATTATTTAAGTATCTCA11.4492753623188406No Hit
ATAGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTA11.4492753623188406No Hit
TCCCTGGCGTACCATTTATTGATAAAACTAACATTTGTGTTTTTTTTTAT11.4492753623188406No Hit
TAATATATGGGGGGGGGGGGGGGGGGGGGCAAAAATGCATTTACAATGGT11.4492753623188406No Hit
ACCAAAAAATAATAAAATATACAAAAAATATAAATCAAAAGTCTTAATCA11.4492753623188406No Hit
AGAGAGGTGTGCGTTAGGGTTTTAAAAAGTAGGGTATGGTTTAGATCAGG11.4492753623188406No Hit
TTTTATTATTGAGTTCTAGCTTTACTTGTTCCTCTTGATTTGCAATACAT11.4492753623188406No Hit
CTAAATAAAAACGCCTATATCACAAGAATACACAAGAAAAGCACGAACAA11.4492753623188406No Hit
CCTTATCTGATCTCTCTCCAAATATCTGATGTTGGGTTCTACGTCCAACC11.4492753623188406No Hit
ATCAAAAAATTAAATAATAAATTAAAAAGTTAAAATTTTGAACTAAATTT11.4492753623188406No Hit
ATATATATTACGTAAACAAAAAATATTTAAATATAACTAAGACCTCTTTA11.4492753623188406No Hit
TTTCATCTCAATCAAAATAGAAATTATATAATCATATGATAAGATGAGTT11.4492753623188406No Hit
ATTCTTAACTATTATAATAAATATTTATAATTTACAGTTTAATATTGTGT11.4492753623188406No Hit
GCTTAAAGACTACGTGAGTGCTACCGACGATGGAGCAGACGAAAACCGGC11.4492753623188406No Hit
GCAGAATTCTTAATTGCCACCACAATTTACTGAACATAATCCAACAAACA11.4492753623188406No Hit
AGGGAAATATTGAATGAATTNAGGGTAAATTATAAGATTTTTTTAATTGT11.4492753623188406No Hit
AAACCGAAAAAATTCGCCAAAACAACAAAGTTNCACAAAAACGAAAAAAC11.4492753623188406No Hit
CATACATATATAATTGAAGATTTACTATTTCTTGAACCACTTGAACCTCG11.4492753623188406No Hit
ATTATATTTAGATGATATGTTATTAATTAATTATATATGCAGTATATATA11.4492753623188406No Hit
GACATGTGCTAGGCNTGGAGGCGTGGTGGGGGGAGCGCGTGGTGGGCTTG11.4492753623188406No Hit
CCATCACAAGACCTGACCTATGTGTTTCTGTGAATCAGGTGAGCCAACAC11.4492753623188406No Hit
GTCGTGCGTGGGGTGGTGTGGCTGGGGGGGGGGGGGGGGGGGGTGGTGGG11.4492753623188406No Hit
GCTGTTGTTCATTTGGTCTATGCATATTAACTGTTTACTTTCTGTTATTT11.4492753623188406No Hit
GGTTTGTATTGCGTCGATAAAGACTTCTTTCCATGACATGCCCCGCGCTG11.4492753623188406No Hit
TGTTACCTACGGCTACAAGTCTACGACCAACCGAGGCAGAACATGTTAAT11.4492753623188406No Hit
GATATATAGTGTGCTTCTGTGGGGCTATGGGCTCTCTCCGAAGGATCTGC11.4492753623188406No Hit
TCTCATAACACACCTATAGCAAGAACAAGAATGTTAAACACAGAGAGTTT11.4492753623188406No Hit
TCACTATGCAATGGTTGTCATCGGGGTGCTCGTTTTTTATTCTTGTTACT11.4492753623188406No Hit
GTTTTATTTTCAATCAATCAAGAAATCATAGTGGCCGATGTCTCTAATAG11.4492753623188406No Hit
AGTGGGGGCGGGGGGTGGGTGGGGGTTGATTGTGGTTGGGGTTTGTGTGG11.4492753623188406No Hit
GACTTTTTAGTTAAGTAAATGAACTTTTTAAAATATAATTAAATATTAAA11.4492753623188406No Hit
GCTGGGCGGTCGCCTTGGGGGTGAGCGAGCGGGGGGGGGGGGGCGGGTGG11.4492753623188406No Hit
GATTTCACATAGGTTCTCATGGTAGCGTGGGATTTCCTGTCTCTTCTCCC11.4492753623188406No Hit
ACTGTGATGAGCAAGAGGGGGAGAGATTCATCAATACTGATAGCAAATCA11.4492753623188406No Hit
GAAGAAGCATGGAGTACAGCACCGTGTCGTGACACCTTATCATCCGCAGA11.4492753623188406No Hit
ATAGTCCTTTGACTGTTCACAAAATAGTTTGAATTTTATCTATCAAATAT11.4492753623188406No Hit
AGTCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATA11.4492753623188406No Hit
GTATAAAATTGCATAAAGCGTGAGAGACCTATTGGTTCCAAAGATAAAAT11.4492753623188406No Hit
CCAGTAACCTTACCGGTTTACGGTAGAAACTTGTACCAGTAATGTCTAAC11.4492753623188406No Hit
TACTAAAACAGATCTTCGTTTCTTTACCTCTCATCAACCCTATTTATTCA11.4492753623188406No Hit
GTGTGGGTGGGGGTTGGGGTTTGTGTGTGGGGTGGGGGGGGGGTGGTTTG11.4492753623188406No Hit
GAATATGCATCGTGCGGGGGGGGTGAGGTCTTATTGTGCAGTGGGTGAGA11.4492753623188406No Hit
TGCTTGATTGACCTCTCGAGTCTCCCAGCTTTAACCTTTTGTAGACTCCT11.4492753623188406No Hit
CTTTAAGCGAGGGAATAGCTACTTTTACTTCCATAAAACAGGTCTTCAAG11.4492753623188406No Hit
TTTCTGGACGCGTATGATCTCTTTAACTAGGATTATCTGTTATGAGAAGT11.4492753623188406No Hit
CACACATTTTTGTGCTAAGGTTACCTTTAGCAATATATGAATGTATCCCG11.4492753623188406No Hit
CGGCAATATAAACGAGTAGAGAAGAGCTGCACCAGCGGTCATGAGGAACC11.4492753623188406No Hit
GGTCGGTGTGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.4492753623188406No Hit
GTGTTATATTTATGTAAATGTTTATTCAAACTCTTACTAGCATAATTCTT11.4492753623188406No Hit
AGATATTAGTTTATGGTTAGTGACTGTGTGGAGTCCTCGGAGTTTGATAG11.4492753623188406No Hit
ATCCTCATGAGAAGCCACGGTAGATGCTCCAGCTATTGCCTCTTCTCCAC11.4492753623188406No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)