FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_032.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_032.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92
Sequences flagged as poor quality0
Sequence length151
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGCTAAATACACATCAATGTTATTGCTTGGTGCAGTAGGCCCAGGGAT11.0869565217391304No Hit
GGTTTAAGGCAAGGCCCTTCACTTTCTCCGTACCTATTCATTATATGTAT11.0869565217391304No Hit
ATATAAACCCATGCAAGTTCATCATTCTCAAATCATCCCTACAACTACAT11.0869565217391304No Hit
CAAAAAAATAATAAATATTATTTTACTGAAAAATAAATAAAACTTATAAA11.0869565217391304No Hit
ATGTAACAATTTGATATGTGTTGCAGGATAAAGTTTACAAGTTAAATGAA11.0869565217391304No Hit
ATTTAAAACAAAGAAAAAACCATAAGAAATTCATTTAATATCGAAATTAA11.0869565217391304No Hit
AGCTATTGTTGTTCATCAGTCAGAAGCCCGTTCGTAAAAAATTTACTTGA11.0869565217391304No Hit
CTAAAGAAAATTGGAAAGGAAATGAAAATAATAAGTAAAAATCAAATAAA11.0869565217391304No Hit
GGAATAAAACATAAATCCTAGTGTCCATCCTTAACAAATTGTAGGCTTTC11.0869565217391304No Hit
CATTTAATATGATTTCCATTTTCAGCTAAAGCAAGATCAATGGACCTTTT11.0869565217391304No Hit
GAAAAATATATTAAACAAGTCTTTTAAATTAATCTAAACATATATAAAAT11.0869565217391304No Hit
ATATAGACCTTGATNAACTAAAGAGACAAAGACCGAATCAATTAAAAAAA11.0869565217391304No Hit
GAGTTAGAGAATCTTCTAAAGGAGGCCGGGGAGCGGGAATCTATGCTAGT11.0869565217391304No Hit
GCAATTTAACATAATTGATATTCATTTCATTATTTGTGTCTGGATTGATA11.0869565217391304No Hit
ATATAATACCTAAGATTCTGTCTCTCTATGGATGTGTGTATGTATTTAGC11.0869565217391304No Hit
GTATAAAATTGTGGATATTTCCCCCCTCTCATATAGCAAAGCAATCTTTT11.0869565217391304No Hit
CATAAATGGTTGGGAGTTCACATTCTCATCATCTTTGGTAAAATGAAGTC11.0869565217391304No Hit
AATATTATATTAAAAAAAAATAATTAAGTTAAAAATAAACTACAAAAAAA11.0869565217391304No Hit
GTTTTTAGAAAACAAAACTAAGTTAATATACTAACCAACAACTCAAAGTT11.0869565217391304No Hit
GATGAAGAGAGTAAGTAAACCCAAAAACCAACCTCTGAAAAAGCTAAAAC11.0869565217391304No Hit
GTCTACTACGGTACACTAAAAGACGGACGAGCTGTAGCTGTAAAACGACT11.0869565217391304No Hit
CGATGATAGACAAAAAGAAAAACAAAAAGTCTAAAAATATAAAATATAAA11.0869565217391304No Hit
TTCACCACCAGAGTTCGGCCTCAGTCGTATCATAATTAAAAACACGATTG11.0869565217391304No Hit
CAATTAAAAATCAAAAAAAAATAAACAATCCTAACTCAACAACAAAAAAA11.0869565217391304No Hit
GGAAGAGGTTCATCTTCGAAGCATTTTTCCTTTCCAATATTTTTCCATTG11.0869565217391304No Hit
AAATAACAAACTTCTATTTTACGAAAAACACTTTACTAAAATTAAACAAT11.0869565217391304No Hit
CTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGG11.0869565217391304No Hit
GAATAGTTGTGCAACTCCCTGAAGTGAACTGTGATGTAGCCTTGTGGTGG11.0869565217391304No Hit
AAAAAAAAAAATTANAGAATGACAAAGACAAAAAAAGCAAAGATAATATA11.0869565217391304No Hit
AACCAAGACTGNCAATAGAAGAGATAACTAACCACGACCATGTATTAATC11.0869565217391304No Hit
CCTTGATCCATGGCATGGATATGAAAGGGATCATCTATCGTTATTCACCG11.0869565217391304No Hit
CCTTTGTTCGAGCAAGCTTCCCGAGCATGTTGACGCGGGCACAGACCGAG11.0869565217391304No Hit
CGCNTTAGCACCTGGNGTAACAGCCCCTGGTGAAACAGCGAGCACCAGTT11.0869565217391304No Hit
CAATAAAATAAAAAAATATAAAATATTAAACTAATATAATATAATATATA11.0869565217391304No Hit
GTTTTTACGAAACGGACCTGTGCACAAAACTCGAAAGAGTTTCTTGTTTT11.0869565217391304No Hit
CACATACAAAAATAAAGAAAAAAAAAAAAGAGTTAAAAAACAATAACAAA11.0869565217391304No Hit
AAAACAAACAAAACAATATATAAGACATATATATTCATCAAAAACATTAC11.0869565217391304No Hit
AGTTATGGGACACGAGGTACCTGTTGAGGTGGAAAAGAAGCTTCAAGAGA11.0869565217391304No Hit
GTAGTCATGTTAGTTTTAAGGTATTTTGTTCTTATTAATTTACGACCACC11.0869565217391304No Hit
AAATAATAAGAAAAATTAAAAAAATTAAAAATAAATTAAATAAAACATAA11.0869565217391304No Hit
GTTCNTAACATGAGGCTTGGAACGTGGGNGACTGATCGGGTGCAGGAGAC11.0869565217391304No Hit
CAATTAGGCCAAAGAGAATAGAGCAACAAGGTCTCATAGCCGGTGCACCG11.0869565217391304No Hit
CTTCATCTAGTTCTCTGGCTATGATAATATGATTGAATGAATCAAGTAGA11.0869565217391304No Hit
CCTTGTCATCGTCTCTTATCTGCTGCAGGAGTTCTTCCGGAACTTTTTCA11.0869565217391304No Hit
GATAACACACAAATCACAACCTTTAAACACAGAGAAAATCACAAATTTTA11.0869565217391304No Hit
GTTGATATGTTTAGTGGTGATGTAAGTGATTTCAGAGGATCAGTCACTAA11.0869565217391304No Hit
CATCAGAACAAACACGTCATGAAACACTTACCAATAACAAAAACAAGAGG11.0869565217391304No Hit
ATATGTATATTTCCATAATCATATAAAAAATAAAATACACACATAAAACA11.0869565217391304No Hit
ATTACCCCACAGCACGACCCATTATATGATGTCGATGAAGCCAAAGCTGT11.0869565217391304No Hit
CTTATGCTGGTTTGCACCGAGTTTTACCGGATGAACCGGGTCGGTTTGGT11.0869565217391304No Hit
GATTTATATACAAACTTACATTTAAAGACGATGCGAAATTTGAAGAAATC11.0869565217391304No Hit
AGATAAAGATTATAAAAGGGTTTAATCAATGGAAAGGTCCCTCCCTACTG11.0869565217391304No Hit
AAATATAATTGTACTAATCACATTAATAGTTGCATTGATTCTTATTTTCG11.0869565217391304No Hit
ATATTGTATACCAACACTGAAAACTCCATGAGCTTGATAGCAAAACTACT11.0869565217391304No Hit
GTATAATACATATTATCCATTGTTTGGTTGGGTTTATATATTTTGGTTTG11.0869565217391304No Hit
GTGTGAAAGACATATATGCAAATAATTTGTGAGATTCTTATTGGATAAGA11.0869565217391304No Hit
CAATTCCTACTGGATGCACGCCAATGGGACCCTCCAATAAGTCTATTGGA11.0869565217391304No Hit
CCCTAGAAGCCGATCTCTTGCGCCCCAAGACTTATATATATATATACCTG11.0869565217391304No Hit
GCGTCAAACATAAGATTTTACCCTCAAACTTTAAGCAGCTATATGAATTT11.0869565217391304No Hit
ATACATATGTTTATTAGTTAAGAACTTAACTACTTTTAAAAGAAATAAAA11.0869565217391304No Hit
GCTCCTACGGAACCAAGGTCGAAAAGATTGAGAAAAATCAGTCATTCACA11.0869565217391304No Hit
GTGCATTGATCNGCTCGTCCCTTCGGTCGGCGATACGCTCCTGGCCTTAA11.0869565217391304No Hit
CTTTTCAAATCCACAAGATAAAAAAAAACCAATCCTTTCAACGCCCTGAG11.0869565217391304No Hit
CTAAAAAAAATGATCAAAAAATAAAAACTAATAAAAAAAACAAAAAACCA11.0869565217391304No Hit
GTACTTCCTGTTCCTACTGGTGGTCCTCGCGCTGATCGGCGTCTACAACG11.0869565217391304No Hit
GTCTTGTACACACTTAAAACAGAAAACGAGTCAACGAAGGTGTCTTATTA11.0869565217391304No Hit
CTAATAAGAATAAACACAAAAATAATCATATCTAAAACCAATAAATATAA11.0869565217391304No Hit
GTCTATCCCAATCAAAAACACTAGAATTGTAATTCTCGCTCTCTTTCCCT11.0869565217391304No Hit
GGTTACGAGTTTAAGAACCGCACAAACACTTTAGACTTGATTTAAAAACT11.0869565217391304No Hit
TGTCGAAGGTGAGCTGAGACTGTAAATGGCGAGCTTAGACTATAAAAGGC11.0869565217391304No Hit
GACTAATAAATGTTCAGATGGGAGACTGAAATTACTGACTGCGAAGTATG11.0869565217391304No Hit
GTTAATCCGAACGGCATGACCACAAACTCGTAGTGGCCATATCGAGTCCA11.0869565217391304No Hit
CAAATGTATTTTATTAATATTCATATGATATAATTAAAATTTAAATAAAA11.0869565217391304No Hit
GATCCCGCCAATCAGCTTCCTTGCGCCTTACGGGTTTACTCACCCGTTGA11.0869565217391304No Hit
CTGGTAAGCAAAGCTCCATCCTTAAGACCCACACCATTTGTAACCATTCT11.0869565217391304No Hit
TCGTTATTGAATTCTGGTTTACTGAGACTGCCTAATTGCGAATGTAATCG11.0869565217391304No Hit
GATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGA11.0869565217391304No Hit
CCTCCATGGCGGCATTAAAAGCCCTTTCTTCTTCATACTTTGCATTCCAG11.0869565217391304No Hit
AAATCCATGTTTATACCAATAAGACACATAAAACTTAAAAATCCTAACAA11.0869565217391304No Hit
GAGAAAAATACTAAAGTTAGAAAATATATATAAGGAAATTAAAAGTTTAA11.0869565217391304No Hit
AGGTCATGGAGGTGTTTTGAAACCTAAGTTTAATTCTTCTTTTGGGGATG11.0869565217391304No Hit
AGATAGCTGTATCAAACCCACAAAACTTGTTCAGATACTCAATTATCACA11.0869565217391304No Hit
ATTGTTCAAAGGGATTCTATAGTAATAAGATCCGCTAAGCCCTATTTGGC11.0869565217391304No Hit
TTGGGAGGCTGTGTGGCTGGTAGGTTTGGTATCGGGTGGTATGTGGGATG11.0869565217391304No Hit
CAAATAAAAAAATAGATTAAAACAAAGAATATAATACGGTTACACAAAAC11.0869565217391304No Hit
TTTCAGAACAAAGATCAAAATTTGAGTTATGACTTACAAGAATTTATTAA11.0869565217391304No Hit
CAGTTACACAGTGGTGAGGTCTAAGGGGAGAGACGAGAGAGACTAGAAAG11.0869565217391304No Hit
GGAAATATCTGTTTCATAGTTTGTTAGTATATATAATCATGATTAGTGTT11.0869565217391304No Hit
AAATTAAACAGGCTGAAAATGTTGAGCTTTTCCGAAAAATCAAACACACC11.0869565217391304No Hit
AATATCTACCGNTGGATCTTAATCTACCGGCACCAGAAGATGATCTAAGA11.0869565217391304No Hit
AATATATCTGTTCAATTTATAGTCATATACACAAACATGTAAATGAACAC11.0869565217391304No Hit
ATTTATTTTCTTTGTGACATTCTATTCTAATTCTCATAATTTAGATGAAA11.0869565217391304No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)