FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_017.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_017.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACCGGGCTGGTGTGCGGTCCGGGGGGCCCGGGCGCCGGGGGCGGGGGT11.8867924528301887No Hit
ATTTGGATGTGATGTACGGGAGCGGGTGGTGGGGGAGTTTGTGTGTGGGT11.8867924528301887No Hit
GTTCGGGGGGGGGGTTTGCGGTGGTTGGGGGTGGGGTGGGTTGGGGGTGG11.8867924528301887No Hit
ATTCCCTATGTTGCAGGGTGGAGGTGAAGACGGGGCTCTCCTACCGCTTT11.8867924528301887No Hit
ATGGCTATAAACACTGGGTCCAATATTATGTGACTGGAAGGCCCAATCTC11.8867924528301887No Hit
TACACATACTGAAGCGTGATGAGTCTCCGATCAACGCCCTCACCGAAAAA11.8867924528301887No Hit
ACCTAATCTCTTGGAGACGCCTATAAAAATGATTCGTAGGGTGTGGGAAA11.8867924528301887No Hit
GGTTACTCTTAATAAGATGAAGAAAATTTACTTGAAGCAAGCTCCTGGGT11.8867924528301887No Hit
GATTACGTGGCAGGCAAGGACATGGGTTTCAAGCTGCCATGTTAAGACAT11.8867924528301887No Hit
TAACAGGATTATATGGTCCTGGAATATGGGTATCTGACCCTTATGGACTA11.8867924528301887No Hit
GAGCCATTGCTTTGAAAATTCATCTGAAAGAACCTCAAGCTTGGGATGGT11.8867924528301887No Hit
CGGGGGGGGGGTGGGGGTGGGTGGGGGGAGGGGGGGGGGTGGGGGCGCGG11.8867924528301887No Hit
ATTTTATGGGGGTGTGGTGGTGGGATGTGCTCCGGTCGGGATGTGTGTCG11.8867924528301887No Hit
TCCGAAGCAGATGTATAGACCTGAATCATCTCGAAATCCAACTAGCCCAG11.8867924528301887No Hit
ATCTTTTTCCTCTTGGTAAAACGCCCTTTTCCCTTGGAAGTAACCGCCTT11.8867924528301887No Hit
CAAATATATAAAGTGTATTCACTTAGATAACAGAATAAACAATACAGAAA11.8867924528301887No Hit
ATCCNGAACCGATCTAACCTGGGATCGCNAATCCCAAGTTAGTCTATGAA11.8867924528301887No Hit
ACAGTGAACCTATCTACTACGTACTTTTGTAAATAATTTGGTTTGTTATG11.8867924528301887No Hit
AGTCAAAGTTCTGTCTTGGTCTGCGTGGGGATAGCATTTCTCTTCTGCNT11.8867924528301887No Hit
GCAATAAGGAAAAGAATTGCGATAGCTAAATGATGATGTGGCATNTCGGT11.8867924528301887No Hit
GCTTTAGAGAAACCACCTCCTCCTCCTCCAGCACCACCAGCACCACCTCC11.8867924528301887No Hit
CCTTTTGGTATTTTATGTAGTGGTGGGGGTTTTTGTGGGTGGGGGTTGGG11.8867924528301887No Hit
CTTTTTAAGCTTACGTGGATCTTGGGCATTTACCTGTAAGAATGGAATTT11.8867924528301887No Hit
GACTACCGCTGTTGCCTACTTCTCTAATCATCCAAACTATAATAACATTT11.8867924528301887No Hit
GCGTCCATTGTCTAATGGATAGGAGATAGGTCTTCTAAACCTTTGGTATA11.8867924528301887No Hit
GTCTATGCTCGCGCTATGGACAACGTCACCGAATGGATACAAGCAAACCA11.8867924528301887No Hit
AGGGAGGGGGGGGGTGTGGGGGAGGTGGGGGGGGGGGGGGGGGGGGGGGG11.8867924528301887No Hit
AGGTGTTATTGGTTCGGTGGGGGGTGGCGTTCAGGGGGTGGTGGTTGGTG11.8867924528301887No Hit
TAGCCATTCCGTCAAGAGTGTCAGCTCTGTCACTAACGGAGTTGAAGATG11.8867924528301887No Hit
GATTCACATCTCCCACTCAAGAAAAGACATGCCTCATACACTGTGGATAG11.8867924528301887No Hit
CGTGCGGGGGATGCCACTGCCCCAAGAGGCGAAGCCGAGAACCATGTTGT11.8867924528301887No Hit
CATTGATGCATAAAATAGAGACTGGCAATATTGTTGGGAAGAAAGCTCAC11.8867924528301887No Hit
AAATTGAAGTTGATAAGTGTTTTATTTGTTTTTGGTATTCAGTGTAGGAA11.8867924528301887No Hit
CCTTCTTTCAAGATCGATCATGCTTAGCAAAAGAACTCATCCCATGATCG11.8867924528301887No Hit
TTCTTCACCTTTGTAATAACCATCTCCCCATCCAAGCACGGAGGCGCCGG11.8867924528301887No Hit
AGCATGCCCCCTGTTTATCCGATACTATTGGTCGGTTGTGGTGACGATGT11.8867924528301887No Hit
GCCGTCGTCGCGTGTCGTGGTGGGGGGGGGGGGTGGGGTGGGGGGCGGCG11.8867924528301887No Hit
GAGTNCTGTTGCGATTAACCACTTGTTTNGCTTGCCGGAGACGATCGAGA11.8867924528301887No Hit
CATATACAAAATGTAAGGTATCAAATAGTGAGTTAATATCTAATTGCAAA11.8867924528301887No Hit
GGCCAGAACCTTGCACCCATCAATGGAACAAGTCCCTCTGTGTATGTTCT11.8867924528301887No Hit
GCAATATATAGAATTCTGTTAATTGAGCTTCGTAGTACCAATTTTAAACA11.8867924528301887No Hit
ATATATTGGAAAGAGGTTTACCTCCTTGCTTCTATGGTTATGGTACAATC11.8867924528301887No Hit
GAAACACATTTGGAACATCTTGAATTGGTCTTTGAGTTTATAAGACATCA11.8867924528301887No Hit
ACCCACTAAGTAAACCTATATTATACCCACATGCAATAAAAGCCACCCAG11.8867924528301887No Hit
TATATAGACATAGGTCGATAAAAAAAAATCAGTTTGTTTTCATGCAGGAG11.8867924528301887No Hit
GATGATCCGCTTGTCACTTGCACCTCATGTGAATCTATATCTTGTGCAGT11.8867924528301887No Hit
ACAGTTAGTATTACGCCTAGCTACTCTTCTTTTAGTCAGCTGGATCGACA11.8867924528301887No Hit
AGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAAAAGATTTTAGC11.8867924528301887No Hit
ATAAATCATAGATCTATCGATAAAAAAAAATATAAATAAGAAACTAAATT11.8867924528301887No Hit
GGTCGGCTGGTGGGGGGTGGGAGTGCGGGGGGGCAGGTCGGAGGGCTGGG11.8867924528301887No Hit
GCTATCAGTTGTGACGGTCGCGTTGTCTCAGGGTGTGTAAATGGGTATTG11.8867924528301887No Hit
GTATTCACACGCCTCATGTCGTAAGAACGATATATACATATATTTCTGTA11.8867924528301887No Hit
TATTGTTCGATCGTTAGAGTCGGATTTAACTTCAGAAATTTAGACTTTCT11.8867924528301887No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)