FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_009.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_009.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28
Sequences flagged as poor quality0
Sequence length151
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTGTAATTGTATAGCAGTATCTGAAAACATATCTTGTGGACGCCCTAA27.142857142857142No Hit
GGTCGGGGGTGGTGGGGGGGGGGGGGGGGGGGGGGGGTGGGGCGGGGGGG13.571428571428571No Hit
GGAGATGACGATGATGAATTTGGGAAAACATCATGCTTTATATATGCTCA13.571428571428571No Hit
GGGTGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGG13.571428571428571No Hit
ATTTTACCTTATTTGAATGAAGAAAGAGGAGTAATGAAAAGCATAGATCA13.571428571428571No Hit
GTTATGTAGTAGATGGTGTAGGCATTTGCCTTCAAACTATGGAGTTTTCA13.571428571428571No Hit
AGGGTGGCGGGGGGGGGTGGTGGGGGGGGGGGGGCGGGGTGGGGGGTGGG13.571428571428571No Hit
TCTTAGCCTTGCCTGGACATCCCCGTAGACAATTATTCCCCAAACTTCCC13.571428571428571No Hit
TTGTCTACACTGATCATGCAGCTGTGAGGTATATTTCTGCCAAGAAAGAC13.571428571428571No Hit
AGGTTAGGGTTTGGTGTGGCCTCGGGAAGGGTGGGGGGGTGGTGTGCTGG13.571428571428571No Hit
CGTATACTCTAATGCTCAACGATTTCTTCTGTGCTGCTCCAACCTTTATG13.571428571428571No Hit
ACTTGTGTTATGGTGTTTTTTGGTGTATTTTTGTTTTTGAAGTCGGTGTG13.571428571428571No Hit
ACTCTAAGCATTCCATTAATTATGTATGAACGCTCAAACAAAAATACTTG13.571428571428571No Hit
AGGGAGGTGGGGGGGGGGTGNGGGGGGGGGGGGGGGGGGGGGTGTGGGGG13.571428571428571No Hit
GTTACAGTTTTGATTCTTTACATAGAACAAAAAGGAAGTAAAAGATAACT13.571428571428571No Hit
GGGCATGAGTGAGCTTCGCTTTTAAGGATTGGAATTCTTCTTCATGTGCT13.571428571428571No Hit
GGGGGGGGGTGTGGGGGTTGTGGTGGTGGGGGGGGGGGGGGGGGGGGGGG13.571428571428571No Hit
ATGGTGGGGGTTTANTGTGAGGTTAGGTGGGAGGTCTGGGAGAATTTTTA13.571428571428571No Hit
CGAGGAGCAGCAGGCCGNGTGTCGGTGTTTCTTTTGCTGTGGGGCGGGCG13.571428571428571No Hit
CGCGTGGTGCTGGGGGATACGGGGCTGTGGGTCGGCGGTTGGGGGTGTGG13.571428571428571No Hit
AGTAAGTAGACTATAAAATCCCCCAGACTTGAATCACACTGTCCCAAGTG13.571428571428571No Hit
TGGTGTGGGGCGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13.571428571428571No Hit
CTATATAACACAAAAACATTTCATAGAAAACAAAACAGAGTAGCAACAGT13.571428571428571No Hit
AGAGCGTACCAAGCCTTCCTCTTGTTGTCGACTTATCCGGTTGAAGCTGC13.571428571428571No Hit
GGGGGGGGGGGGGCGGGCGGGGGGTGGGGGTGGGGGGGGGGGGGGGGGGG13.571428571428571No Hit
ATGGGAGAGTGAATGATCTAGGGTCTTCAAGCTTCTCTTGCACTATAATC13.571428571428571No Hit
AGTGGGTGGTGTGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGG13.571428571428571No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)