FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_008.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_008.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGAACGGTAGGAGCAAATTAATACTAAAAAAATCGTAGTAAGCACATC11.2048192771084338No Hit
GCAATACAATATATTATAACCATCATAAAATCTGGTTTTGACATTAAGTA11.2048192771084338No Hit
CGCTACCAAAACAAGTAACAGAAATGAAAAAAACATTGTTATCACATTCT11.2048192771084338No Hit
ATACATGACAATGCAATTTTTGATTTCAGGTTACGCAAGTTGAGATTTAG11.2048192771084338No Hit
CAAATGTAGTTTGCACAAGTAATCCTACCACTAACCGACTTAGAAGCTTC11.2048192771084338No Hit
TTCTATTTATTTTTCAAGTCTCAATTTTAAAAATTCTTATCACATATAGT11.2048192771084338No Hit
GTACAATGACAAATAACATCAGAAATTAAAAGAAATACAACAACAAATAT11.2048192771084338No Hit
GATATAACTTATAGTAAGAGAAATAAAGAGCGAACCACAGAAAAGATAAA11.2048192771084338No Hit
ATGTCACGTTTGGCGGGTGGGGGGGGGCGGGGGGACTGGGTATTGGACCA11.2048192771084338No Hit
TTATTAAATTGATCTCAATTTCGTTATGGTCCTAATATAAAAATGTTACA11.2048192771084338No Hit
GACATATTTACTCAATCGAAAGTGTTGGTTATCCAATTGTAGTTGGGGTT11.2048192771084338No Hit
AAAGTAAACTAAAAAGAAAAAATATTATAATATATAGCACAGATAGCGAA11.2048192771084338No Hit
GTTAATCCTCCTTCGATCACAGAAGCTAATACTCAGGTCAGTTTGTCTCT11.2048192771084338No Hit
ATATAAAGTTTTTATTCCTTTCGCAGGAGTAAGGATCTAGGGTTAGTGCG11.2048192771084338No Hit
AAAAAAATAAAAATTTAAAGATGAATACACCGAAACTAATACTAAAAAAA11.2048192771084338No Hit
ATAAACATTTGTTAAACAAAAATGTGAGTAGCTGCCTTAAAAAAAGTGAG11.2048192771084338No Hit
CTACATCCAATAATATAAATACCAACAACCTTATGAGCAACAAAGACTGA11.2048192771084338No Hit
AACGTTGCTAGCTCCAAAAACCTTATGGACCGCCGCGAACCTAGCCGCTC11.2048192771084338No Hit
GCTCCGTTCCATGCCTCATTTCATAGGGAACCTCAAAGTGGCTCTATTTC11.2048192771084338No Hit
AAAGAACACAGAGAGATAGATAGATTTTTCATTAAGGCTTAATTTAATTA11.2048192771084338No Hit
GATGAACAAGGAGCTGTAGATCCGCCTGTGAATCCGGCGAATCAAGAAGC11.2048192771084338No Hit
CAATTATTAATATATATATATAGCACTTATTTATTTTTATTAAAAATTGG11.2048192771084338No Hit
TATCAAATAAGACATAAATTTTAGAAACAACAACGATGAAAATTGAGATA11.2048192771084338No Hit
GCCCGGAAAACATCGTTTTCCACTTCGTCGCATCCGCATCCGCCGACGCG11.2048192771084338No Hit
GATCAACNTTTCTGAAAGCCTGGACATAATAATACAGTGAGACTATGTGA11.2048192771084338No Hit
CGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAA11.2048192771084338No Hit
CCTACATACCANTGTGTGGTTGACTGGTTAGTGGTTGCCTACTTTTATCA11.2048192771084338No Hit
TAGGAACAGGATCTGAGCCTGCCGTACGCACAGGACAGTCTCTTTCTGAT11.2048192771084338No Hit
CTCTCTTCACTTCTCGGCTTAGGCTAAAACATCTTCGGTTACTGCCGACT11.2048192771084338No Hit
GTGGGGGTGTCTGGGGCGGGTGTGTGGTGTTGTGGTTGGTGGGGGTAGTG11.2048192771084338No Hit
GAGTTAATGCAGCAGTCAAGAATAATCCTATTCAAGCACCTAAACTAAAC11.2048192771084338No Hit
AAATTAAAAAAAACCAAAAATTCATAAAAAAATAGGAAACAAATAAAAGC11.2048192771084338No Hit
CTGTTGAGAAAGTTGCCATTGCTAGCAGTATCTAACAGTATCCTTATCTT11.2048192771084338No Hit
ATTTGATACTTGATTAGTCTGATTTCACTAAAAATGAGCTTTGAGAATGT11.2048192771084338No Hit
GGGGGAGGGGGGCGGGGGCGGGGGGGGGGGCGGGTGGGGGGGGGCGGGGG11.2048192771084338No Hit
AAGTCATATAATCTAGGATCATTGTCTAAAATAGAATATCTCATAAATTT11.2048192771084338No Hit
AGACAGAATATAATGGTTAAAAATGTATTGTTCAACAAATAATAATAATA11.2048192771084338No Hit
ATTCTTCATATTGCAGCAAAGCATGGGAAACATCTACTTGTATATTATTT11.2048192771084338No Hit
ATCCTAAAGAGAATCCAGTACTTCTTGGTCGTGAATATCTGAATAGGGCG11.2048192771084338No Hit
TACCTAATGGTGGGGCGACAAACATCCTTTTGGGTCGAAGATCTGGTATC11.2048192771084338No Hit
AAATGCTATTAGCAAGCTATCCGGACTAATCTCCCCAAGTTTTTGGTTAG11.2048192771084338No Hit
GTCTGATAGTACAGGGCAAGTCCAAAAACCGATCTTGTTGAATGGAGCAG11.2048192771084338No Hit
AAATAATACGTAAAAAAACATACAATTAAAAAAAAAACAAACAACCCTTT11.2048192771084338No Hit
GGACTAATCTACAAGGGGTTGAGGAGAAGAAGTCATCTCTCTATTTCTCC11.2048192771084338No Hit
ATGTTGATAGGGCTCAAGCATCATCGTCTTCGGGTTTATAGTGTTTTGCA11.2048192771084338No Hit
AGATGTATCTGTCTGTCTTCCTGATAAATCAATCGATTTAAATCATGATG11.2048192771084338No Hit
GACTGAGACCGACCTTGAGTGGACTAGCTTCTAGATAATATAGTATCTCG11.2048192771084338No Hit
CCATTAGATTTCAATTAGAGTTTAGTTTATATTTTAATTTTATTTTGTTA11.2048192771084338No Hit
CTCCTATTGGAGATGTAGGAAATCTCGGCATTTCAGAAGTACCAACCCTT11.2048192771084338No Hit
AATCAAAGCATACAATTTCACTAGCCAACATGAAGTTTCAACTAATGAGA11.2048192771084338No Hit
ATCTACGCCCAACTGGTGAAAGACAATCTGGTTGATCAACTATAAAATTA11.2048192771084338No Hit
GCATATATATGCACAAGCAAACCTATCAAAGAATCGATTTTATAAACTTG11.2048192771084338No Hit
GGTTGTATTCACCAAAGAATCTGAAGTGATTTGACTGTTAGTGAGATTTT11.2048192771084338No Hit
TAAGACGAGTGGGATAATAATATATAGATGTAGAAAATTATATATAAACT11.2048192771084338No Hit
CCTTAGTCATACTCCTCAATGAATACCTCGGCGTCATCTCAACCATTGAC11.2048192771084338No Hit
CTCAAACACCAATTTCGTCCATGAGGTAAAAGGAACTGACAGAAATTAGC11.2048192771084338No Hit
ATGTATAGAAAGCAAACAAAAGGTAGACAAAAACTAACCACAAAAGACAA11.2048192771084338No Hit
GTTTGTACTTTTATTTTGATAGATTTTATCTCTTGCCGAGATTCTTCGTG11.2048192771084338No Hit
TATATATATAAGAATCTATATTACTTTCTAGGCTACCCGCCATAATCTAG11.2048192771084338No Hit
CGGGGATTCAGACTATAGAAGTCACTCACATGAACGCCAAGAAGACACCG11.2048192771084338No Hit
TAACTATAGAATACCCCCATTTCGTGAATTACGGCATTTATTCGAGTGAT11.2048192771084338No Hit
ATGCAAAATCCATGCGAAATAATTTTCTGCATAATCAATTCGTGCAAAGG11.2048192771084338No Hit
GAAAGCAAAAATGTTATTTTATATTACCATGCAAGTCTGCTTCCTTCATC11.2048192771084338No Hit
CCTATATTGTTACTGTTGACTGTGTTCTCGAGACTTTTACCAGCATCAAC11.2048192771084338No Hit
CAAAAGTGGAGTGTTGAAGTATTTCTATTGATCGGTCATGTCATATAGGC11.2048192771084338No Hit
ACACCGGTCCACGAGGTCACTAAAGGAGACCCGCCATGAAAGCACCGAAC11.2048192771084338No Hit
TTATAGACATGTATAATGAGACTAAATGATTGTTGCCGTCTTTACTCTTG11.2048192771084338No Hit
CGATATAACCTGTTAAGAATTGATTTATCGAGTTTAATTATATTAAAAGA11.2048192771084338No Hit
GTTATTAACAATGAATAATACGAAAAGAGCTTCTTTTTTTTGCAAGAAAA11.2048192771084338No Hit
ATGAGCTGTAAGCTGGAATGTTATTTAAGTATGGTGTTTATGTAANATTA11.2048192771084338No Hit
AAGTCAAACTTGTAGTGGAAAACATCATTGAAAAAAGAAACCTACACGTG11.2048192771084338No Hit
GGGGGGGGGGGGTGCGGGGGGGGGGCGGCGGGGTGGGCGGTGGGGGGGGG11.2048192771084338No Hit
ATTTAAAGTTGGATGGTAAAAAATAATTTTAATTTTCATGTATAATTAGT11.2048192771084338No Hit
ATTCCAAATCAATTTTGGAAACCTATTTGAATGAACCTAGACTAGAGATG11.2048192771084338No Hit
ATGAGGGTGTGGAATCTTGGGGGATTGGGGAGGACCGAGGGGACGATGCT11.2048192771084338No Hit
AATCAAACTTACATTTCTTGAAAAAAAAATGTTGCGGAGACAGGATTTGA11.2048192771084338No Hit
ATATTGTCTGGTCTTGAGAAAACCAGTGATTTCCAGAGAGAAGCAGCGTT11.2048192771084338No Hit
CTTATAGATTANCCTCTAGATTATCTAAGAACCGATTTTTGTGATGTATT11.2048192771084338No Hit
TCACAAACTATCATAAATTAACTAAATAAAAAAATAAATCTGTTATTATT11.2048192771084338No Hit
ATTCTGAAGTTAACAACCTTGTGACTATACATCACAGGCTTCAGGAAACA11.2048192771084338No Hit
AGGATTGAAAACAGTCTCACTATAGACTCACAACATTCTCAATCTCTGAT11.2048192771084338No Hit
GTGTGGGGCGGTGGGTAGGGCTTGGTTGGGGTTCGGAGGTCGGGGCGGGG11.2048192771084338No Hit
GATATATACAATCAAAAGGTTGAGAAAACTCGCAAGTACAGAGCCGAGTT11.2048192771084338No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)