FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_005.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_005.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAGATCAGATCCCCTGTGTATTGGCTAGACCCGGATAAACCGAATCAG17.142857142857142No Hit
AAACAAAGATTCAGAAGAAGAACATACCCAATGCAGATACAAGAAGCCAC17.142857142857142No Hit
TCATTACCAAGCTCACAGAATCTGGTAAGGGTGTCCAAGAATCTATAATT17.142857142857142No Hit
AACGCGGTGGGGGGAGGGGGTGAACGATAGGATGGGATGTATAAATGGGG17.142857142857142No Hit
CTCATCACCGAGCTCAGCACGAACTACACCACCCAATTAATAACAACAAT17.142857142857142No Hit
ATCTTGTCTGTTCACAGCATCTTCGTATTCCCGCCAATCCCTGAGCGAGC17.142857142857142No Hit
GTGGTGAGGGGGGTGGCTTATATTTGTGGGGGGTCGCGCGCTCGGGGTGC17.142857142857142No Hit
GAGTGGCGGTGGACGGGGGGGGCGGGGGGGGGAGGGGGGGGTGGGTGCTG17.142857142857142No Hit
CACCCATACCCAACCAAGTTACACAAGTTACTTCGATGCGAATTAGAAAA17.142857142857142No Hit
GTCAAAGATTACCCGGGCATGTCGGCCAAGGTGTGACCTCGTTGAATACA17.142857142857142No Hit
TGTCTCGCCTGCAACGAGGCGCTAGTTCTGTACGCTTAGGGCAGTGGGTG17.142857142857142No Hit
AGTACTACTCTCGCCCAAGCGCGCTTGACTGCGGAGTTCTGATGGGATCC17.142857142857142No Hit
GAATAAAGTTAATCAGTTTGTATCTAAATCCCAACCGATTCGTANAAAAA17.142857142857142No Hit
AAAAAAAAAAAAAATAATACTAACATTTCTAATAAAAAAACCATTCCAAA17.142857142857142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)