FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n02_ath_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n02_ath_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTTAGCCATACACTTCACATGTTTCTAGCGATTCACATGGCATCATCA11.2658227848101267No Hit
CGGTTGTCTGGGGGGAGGTTTTTTTTGGTCTGGGTGGTGGGTGGGGGGGG11.2658227848101267No Hit
CTTCGAGGCTACCGGTGGGGTGGCTCGTTGTCCGTGGGGGGTGGGGGGGG11.2658227848101267No Hit
CGATCAAAATTCCGCTGAGGGGGGCTGTGTATAGCGTGGTGGGCGTGGGG11.2658227848101267No Hit
GCGGGAGCAAGGCGGGCGCGTGTGCCTGGGGGGGGTGGGATGGGAGGTGG11.2658227848101267No Hit
GTGTATTATTGAGTATAAGAACTTAATCCGCCACACGATCTTATAAGCCT11.2658227848101267No Hit
GTGCCAATTGACTCGCGCTGGTCCTGCTTCAAGCCCTGTTCCAGTGCCTT11.2658227848101267No Hit
GAGGTAGGGGGGGCGGAGGGGGGTGGTGTTCTAAAGAATGGGTACAGATT11.2658227848101267No Hit
CTCTAAGCCATTGGACCAGCAACGTTGGCCTGGAGCTTCTCGTAGAGGGA11.2658227848101267No Hit
GTGTAAGTATGAACGAATTCAGACTGTGAAACTGCGAATGGCTCATTAAA11.2658227848101267No Hit
CATGGTGATCATGGCTGGGGTCAGAGTGCTCTGGTCGAGTGAGCCTGTCA11.2658227848101267No Hit
ACCATCTATCATATAGATATGGTTTATTTATAAGAACTAAGTTTGACTAA11.2658227848101267No Hit
CTTGTAGATGAGCAAAACAACAAGGAGACGATTATTGCTGTCCATGTCGA11.2658227848101267No Hit
TTTCTTTACTGTTATAAAGATGGTCAGCGATTGCAACACATTTGCCAAAG11.2658227848101267No Hit
GCGCTTATGGTGAAGGTTCTNTCCGTGGTTATGATGAGGATCTGAGAGCT11.2658227848101267No Hit
GTTTCTGATGGTCATAAATGTTAGGATCCTGAGAGAGCTTGGGAAACTCA11.2658227848101267No Hit
GGGGTATGAGGAGTGGGGGTAGGGTGGGTGCGAGGCTGTGTTGTATGGGT11.2658227848101267No Hit
GGGGGGGGTGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.2658227848101267No Hit
TAATTCTGAGAGCTTAATTTCCACATGTTGTATTTTTACACAGATATCCT11.2658227848101267No Hit
TGGGCGGACCGCGACCGGGCGAGGTGTTTGTCCGCGCGACCCTGGCGTCG11.2658227848101267No Hit
GGGTGGTGCGGGGGGGGGCAGCGTGGGGGGGGGCGGGGGGGGGGGGGGGG11.2658227848101267No Hit
ATATTTTATTTACAAGTAAAAATATCAGAAACAAAAACTGCTTCCGATTA11.2658227848101267No Hit
GTTAGTTTCAGTTTGATTCTTTGATTCCGAATATATTTTTCAAGATCATA11.2658227848101267No Hit
ATTAGAANTGGNAGGCGCTTTGGTGGGATCCTCACGGACAGTAAAAGATT11.2658227848101267No Hit
GTGTTAGGGTTTGATGATCAGGTTTTATCCAGAGACTAAACCAGATGATG11.2658227848101267No Hit
GGTACTGAGGGTAAGCGTAGACGGCAGGAACCGCCCCAACAGGCTGCGGA11.2658227848101267No Hit
GTTGAGTGCTGTGGTTGTGGTGTTGGTTTGGGGGATGGGTGGTGGTAGGG11.2658227848101267No Hit
GCACGGAGGGGTTCATCGGTCTGATCTGACCGATGAGGATGACCGATGTG11.2658227848101267No Hit
TCTAATACCTTAGCTTTAGATTGAATGAAGTCATCCAAACTCAAAGGCCG11.2658227848101267No Hit
TAATATACATTTATTCCATAAAAAAAAACATTAAAATAAAAAAAAAAACT11.2658227848101267No Hit
CCTTTTTACCCCCCTCCCCTTGGGGGGGGGGCGGGGGGGCAAGGGGGAGG11.2658227848101267No Hit
ATAATAATAAGCTCTGGTTAACAAGCTGTTAAAAAAACATCACAAGACGA11.2658227848101267No Hit
AGTCAAGACCGGTTTATATATGATATGGATAAAAACTTTTATAGTTGGGC11.2658227848101267No Hit
ATTTTTAACTTNATTGGTACTCTTTAAACTCCTCCAGAATTTTTATTTGT11.2658227848101267No Hit
GTCCTGTGTGTTGTAGAGTGTGGCGGGCGGGGTTGGGGGGGGTTGTGGTT11.2658227848101267No Hit
GTACAATATCCTGGGGTGTACCGGAAGACTTGGTTGCGGCGTGCGGGGCG11.2658227848101267No Hit
ACCATGAATCGATCTTGAGCTGACGTTTTCCAGTCATTCCGTCTTTGATT11.2658227848101267No Hit
GTTCTTGTGTGAGTGGGTTCTTTTTGTCGGGGGTGGTTTGAATTCTTCCT11.2658227848101267No Hit
GTATGACGTAACCCGCAACCTCGATCTGTTCTCACCAGTTGTCTATCACA11.2658227848101267No Hit
AAAAAAAGGTGTGTACGAGATTTATAGAGCGTCTAGAGATTCTGAAAGAT11.2658227848101267No Hit
GCTGTACCCATTGGCGAACTACTCCCTGCGTTTGATCAAGATGACAGCCG11.2658227848101267No Hit
GGGGGGGGGGGGGGCGGTGGGCGGGGGGGGGGCGGGGGGGGGGTTGGGGG11.2658227848101267No Hit
GTTATTGGTTGTGTTAAATCGGAAAAGTGTGTCCTGTGGATTGAATCGTA11.2658227848101267No Hit
TCATAACATTGTGAACTGTGATTCACTAAAATGTAATAATCAGTTTTTTT11.2658227848101267No Hit
GGGGCGTGGGGGCGGGGGGCGGGGCGCGGGGGGGGTGTGTGGCGGGGTCG11.2658227848101267No Hit
ATAAAATGTGATTGCGCAGGGCCCTCGTACCCTCCAATAATGAGATTGTA11.2658227848101267No Hit
CAAGATTTCATTCTAGAAATCTTAGGTCTTCCAGGTTGATTACGAGGAAT11.2658227848101267No Hit
AACTTATATGTAGCGTTTATTCGGTATATATGCAATATAAAGTGGTGTTA11.2658227848101267No Hit
CTATTGAATGAAACATCAATCCCAATGTACCAACTTGAACTCCTTTGTTA11.2658227848101267No Hit
GCCTTGGTGATCATGGAGAAAGAGTCATCATCATCATTGAGATTGATATC11.2658227848101267No Hit
AATCCCTAGAGTCCAATAAGGATAGCGTGTGTGGGGACCGACCTGGGATC11.2658227848101267No Hit
ATCAACAGACTTCAAAATCGACGAAACCTCTGAAAAATCCCCAAATCAAA11.2658227848101267No Hit
GCCGTGGTCGGGGTGGGTCCTAGGGGGTGGGGGTTTTCGTGGAGGGGTGG11.2658227848101267No Hit
CTGGCCACGCGAACTTCATCGGTGTCGCCAAGCTCTCGCGCGTGACCTCG11.2658227848101267No Hit
AGTCAAGGGGTCTGTATTGTACAATTACAGGTGGTGTGCGTGTTCTGTGG11.2658227848101267No Hit
GGTGGGGGGGGGGGTGGGGGGGGGGGGGGGTGGGGGGGGGTGGGGGGGGG11.2658227848101267No Hit
CTAAGGAACAGACAAAACCCAATACACTAGAACAGATAACACGAATCCGT11.2658227848101267No Hit
CAGCAATTAACTAGGATCAAATAGCAAAGAGATCAATGAACAAGACGCCA11.2658227848101267No Hit
TTGTGAACATATCGAACTTGTCTATACGGCTGGTCTAAGCGTGTTGTTAC11.2658227848101267No Hit
CTGTTGGGGGGGGGGGGGGGGGGGCTGGGGGGGTGGGGGGGGGGGGCGGG11.2658227848101267No Hit
ACATCTCACAAGATGTTTGCGTTCTAGTCGATAACGAGCAAGCAATACCA11.2658227848101267No Hit
GTTTTCCACTATCAAAATGCGAGGAAACCAAGTCACGCTGTGACAGGGAG11.2658227848101267No Hit
GCTATAAGGTTTTTTAAAAAACAGTTTTACATATAAATCGTGTCTTTACA11.2658227848101267No Hit
CTACATACACCGGCGAGGGGCTTTGGGGAGTAACAACAGCTGCAGAAAAC11.2658227848101267No Hit
CTTCTAACAAGGAAACACTACTTAGGCTTTTAAGCTTGAGTTGCAGTTTA11.2658227848101267No Hit
ATATTCTACGACAAGCAATTCATTTATTTTCAAAGCGACGCATTTCCTAT11.2658227848101267No Hit
GGTGAATGCCCTGGTGGGTGGTGTGAGGGTGGGGGTGGGGGGGGGGGGGG11.2658227848101267No Hit
ACGTTATTTTTAAATAAATATAATTAATTTTGGATTCCATTTCGAAAAAG11.2658227848101267No Hit
GGATATTTTGTTGTTTTTTTTGACTGGTCTGCCTGGGGTGGCGGGTGTTC11.2658227848101267No Hit
CTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTG11.2658227848101267No Hit
GACTGTAGTGTTGTTTGTTGTGATGTATGGGGGTGTTTGGTTGTGGGGGG11.2658227848101267No Hit
GCCCTTTTAAAACTGAGAGATTTTGTNTGCTAATGAGGTAATTCTCCATA11.2658227848101267No Hit
CGGGCGGGGTGGTGGGTTAGGTGTGCTCGGGGGGGGGGGGGGGCGCGGGG11.2658227848101267No Hit
GGTGGGCAGGCTGGCAGAGTGGGGGGGGCGGGGGGGGGGTGGGGGGGGAC11.2658227848101267No Hit
TTATTGTCTGGATCTCGTCTGAGTGTCGAATCTGAGACTAGAAAAAGGGC11.2658227848101267No Hit
CTAATCACACAATATCCCCAGTTTTTTATCTCTTTTTCTTTTGTACGATT11.2658227848101267No Hit
TCATAAAAGAACTGATAGTTGTGGTCTCTTTATAGTGGCCTCAGTCAATC11.2658227848101267No Hit
GTGTTCTATTTGCATGCTTTGTTTGATTGTTTTCATTCTTAGCATTTAGA11.2658227848101267No Hit
CACGCGCACCTGACACTATGGGTGCGCTGCCGGCGGCATGCGCGGCGGCG11.2658227848101267No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)