FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_095.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_095.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1064
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCCCTGAAATCAGACTTCTTCTTAGAGGAAGTAAAGAGAGAAGCATA30.28195488721804507No Hit
ATCATACACATGAGATCAAGTCATATTCGACTCCAAAACACTAACCAACC30.28195488721804507No Hit
GCTCTAAATGTACTGTATTCTGTATTTAGGTTCAGAAGAGTAATAAACCC30.28195488721804507No Hit
AACTAGGGGAAGGTTTAAAAAACCCACGGTAGTATGAAGTGCTACTCGAA30.28195488721804507No Hit
GAATTAGTAGATCGGTTCCGCCCAAAATGGGAATGGACTAAGGTTATGAA20.18796992481203006No Hit
ATTTTATCTTGTATGATAAAAGGTAAACATAATAACATTTGATTTAAATA20.18796992481203006No Hit
CTGTTTGGTTAAAGCCATGGTACTGGTGGTCATGGCCTGTTCTTCCACTA20.18796992481203006No Hit
GAAGGAGAAGAAGCAGCTTGAGGAGGAGAAGAAGCAGCTTGAGGAGGAGA20.18796992481203006No Hit
GATAGCGGGAATCGAACCCGCGTCTTCTCCTTGGCAAGGAGAAATTTTAC20.18796992481203006No Hit
CCGTTGATACTGTCGGCCAAAAGACTTCGNCTCCAAGGGATAAAGTTCCG20.18796992481203006No Hit
ATACCAATTGAAGTGGAGGGTTTCTGCAAACAACAAGGAGCTGGGTCAAC20.18796992481203006No Hit
GCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGCGGTGCACC20.18796992481203006No Hit
ACATTTGGTTGTCACAACTTGTTCGGGACTGGTATAACAAAATCCCTGGG20.18796992481203006No Hit
CTTTTGTCCAGATTGGTTTCCTGATGGCTTTACCTATGCTTATGGAAATT20.18796992481203006No Hit
GTTATGACCTATGGTCCTTCCTTTTCTACCACCTCACCTAGCAGCATCTC20.18796992481203006No Hit
CATGATAATGATCCTTCAGTAAAGGTAGACATAGCTTTTTTGCAGAGGAC20.18796992481203006No Hit
TTCTTATTCTCATTGAGTAAATTGTGAATTTATTAAGGTTAAGGAGTATA20.18796992481203006No Hit
GTTCTTGAAGACGAGCAGAACAATGTGTATAGCCGACCGGAGTTGACGAN20.18796992481203006No Hit
GTAATCTCTTTTCTCATTGTAAAAGCTTTGTCAAAATTAATACAAAAGTC20.18796992481203006No Hit
CTTTCATGGTGTAACCAAAGTCCGTATGAGTCTTTGGCTTTGTCTCTTCT20.18796992481203006No Hit
GCTAAAGTCCGTATGAGTCTTTGTCTTTGTGTCTTTTAACAAGGAAACAC20.18796992481203006No Hit
ATCTACGTATGTGTCAATCAGGCCAATCCAACTTTGTTGTGGTATAAACT20.18796992481203006No Hit
GGTTTCGTACCTACTGCCCAGTTTGATAACATGTTTTTGTTGCAGGAATG20.18796992481203006No Hit
AAAGAAAGTTGTAGCTCAGTTACAGATTTTACCATGGTCCCTTTCTCAAT20.18796992481203006No Hit
GTCCATTGCAAGTCGAAATTTATAATTTCATTACACTAANAATTAAGTAC20.18796992481203006No Hit
GTACTACTTGATTCAAAAGGTTCTTTATGATTTACTACTAAAACTAAATG20.18796992481203006No Hit
ATACTCAATCATACACATGACATCAAGTCATATTCGACTCCAAAACACTA20.18796992481203006No Hit
GCATCGACTCTTGGTTGACAAAATGGGGTACATCTTTCCCTGTGTGCAAG20.18796992481203006No Hit
GAAGCTAAAATGCTTCGCTTGTAGTTCCTTGGATGATTTCCAAGTGAAGG20.18796992481203006No Hit
GTAATGTATATGGAATTTACCTTTTTATGATTCGACAATGTAAGTAGTTA20.18796992481203006No Hit
TGTTTGTAGATATATCGCGCCCGCGAGGATGGTTCCGTGGTATTCCGAAA20.18796992481203006No Hit
CTTTCATCTATAGTCATGGCGAATGCAAGTTTCACAGGAAACTGCCTACG20.18796992481203006No Hit
ACATTATTGGAATAACTAGAAGAATAACTAGAACGCTCATCCCAACCATA20.18796992481203006No Hit
CAATAAGGTTCTCCTGATCTTATCCAGTATAAACATATTGGCAAAAATTA20.18796992481203006No Hit
TCCCTACATAGCGGGTGGGACCCACGGCGAATGGTTCATCAAGTCTTCAA20.18796992481203006No Hit
GGTGTTTCAGGCAAAACGAGTCCACCGAGGAACATGAGTATAGCTGGGAC20.18796992481203006No Hit
GCTTCACTCGATTCTCCATGATATCCTATCTCTATTAATTTCTTTTCTGT20.18796992481203006No Hit
GAATTAAATATACCATCTATCCAGTGCATATGTAGCTTATGAGAGTGTTC20.18796992481203006No Hit
GAAGCTGATTGGTTGAGGATGTAACCGTGTATGGGTGCTCTTGTAAGACA20.18796992481203006No Hit
GCCAAAAACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGTA20.18796992481203006No Hit
CCTTGCACAAGATGTTGACCATCTGGTAATTGCCACTCCAACGAGATGAA20.18796992481203006No Hit
TATATAATATGGTTTATTTTTACTTGAAAACATTACAGCATAATTGGTAC20.18796992481203006No Hit
ATACTCTATTTTGACGATTTGGTTTACGCCGTTAACGGTTGTTGAATGAA20.18796992481203006No Hit
CTGGTGATGATGATGATGATGATTCCCCTTCCACTTGCAAGAACTCGTTG20.18796992481203006No Hit
TTCTTATACTCAATAATACATATGACATCAAGTCATATTGGACTCCAAAA20.18796992481203006No Hit
TGTGTAAAGTTCAGACGCCTGCTTCTCCATTGGAGATGGAGTCTTCAGAA20.18796992481203006No Hit
GGATTAGATAAAGATAAAAAAAAAAGAAAAAAGAACTTACCTATAACAGA20.18796992481203006No Hit
TAATTTTTTTGCAAAAATTGACAACGCTATTTATGGTAGCGGATCGAATC20.18796992481203006No Hit
TTGATAGTGGTTGTACACATTAATTTCTATCAATTGATTCGCTACTTTGG20.18796992481203006No Hit
GACTCATTTCAGACTGGTTCTATGTCTTATTTGATCGGTTTACAGCAAAT20.18796992481203006No Hit
TTATTAGTGTCCGAGACAAATTATTTTTTATTTTTTTTAAAAAATCATTG20.18796992481203006No Hit
TTATAAGAGTTAGAGATGGATAGGACTGTTTAGACAACACTTATACCAAT20.18796992481203006No Hit
GGTTTTGTTCCGTTTTTTTTTTAATGAAATTTTGGCCTTCCTTGTCTTAA20.18796992481203006No Hit
GAGTAGTAATTTTATTATCCCATTCGGATGGATTATATATAATAATTATC20.18796992481203006No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)