FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_093.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_093.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATCTTGAATTTTCTCCCTAACGCAGGTTAGATGTTATTGATAGGTGCT11.4705882352941175No Hit
GTAAATACTGGATCGAAAAGGAGCCCATCACTGGTAAATTCAGCCAAGAG11.4705882352941175No Hit
AAATTTAACCCAACATATTCATAGAATCGATAATTAGTTGATATGATGAG11.4705882352941175No Hit
CCTCTCACAATTGTGGCGGTTCCTGCTTCTGTACTCACGGTAGTTCTGGA11.4705882352941175No Hit
GGCCAACCGCGGTTCCGCTCGAATCTGAATACATTTCCCTCGTCAAAATA11.4705882352941175No Hit
CATTTATGTAGTAATCAATGTATAAAAAGCAATGCTAGAGATAATCGAAA11.4705882352941175No Hit
GCTTCTCAAAGCTTTGATGGTTTAGCGGAAATCCGTATGAGTCTTTGGCT11.4705882352941175No Hit
AAGCATATGACTACTGGCAGGATCAACCAGGTAGCATTCATCGATCACGG11.4705882352941175No Hit
GAACTTGACTGGGCGATCTTTAGAGCGGATCTCAATAAACCGATATATTG11.4705882352941175No Hit
TAAACATACACATGACAACAAGTCAAATTCGACTCCAAAACACTAAACAA11.4705882352941175No Hit
GAAATGCGATTTTAGCACTGGAAAAGCATAACCCCGGGAGGGGTTGGCCG11.4705882352941175No Hit
ATATAAGAAGATCTCAGTGGAATAATGGAGAAATGAAAATCAAAATCTGA11.4705882352941175No Hit
CCATAAAAGCTTTGAGAAGAAAGAAGAAGGTTGGTTAGTGTTTTGGAGTC11.4705882352941175No Hit
GACTAGATCTCTGCAAGAGGTTCACTTGGACAAAAACGTGAAGTTGCTGG11.4705882352941175No Hit
GGTATCCCATACTGAAAAAACTGCTAGACGCTCAACACGAAATCATCAGA11.4705882352941175No Hit
TAATTTGCCGTTGCAGAAACGACCGGTGGCTTTGTGGTTAGCGAAATCAC11.4705882352941175No Hit
AAATTAAAAATTATAAAAAAGATTGAAAAAAAAAAAACAAAACCTAAAAA11.4705882352941175No Hit
ATCATAATCTTGTATTAGTAATACAATTGTCATGCCCGAGCCTTTGCCAT11.4705882352941175No Hit
GTAAACTACGGAACTGATCTGATGATGGATGGAGATGATGTCTATGTTTC11.4705882352941175No Hit
AGTATAGATATTGAAACAAAGAATAAGGTATAATGAAAGTAGAATCAGCA11.4705882352941175No Hit
ATGTATATGAATAATACCCCCCCTAGAAACGTATAAGAGGTTTTGGCCTC11.4705882352941175No Hit
GGATCCTCGTTTGTCTTTATTGAGGAATCTAGTGGCTTGTTCTTCTTGAC11.4705882352941175No Hit
GAGTCTGTGTTAATTTAAATCTGACCAGAAAATTTTACAGAATAAAATAC11.4705882352941175No Hit
CTTAAAATAATAAAAAAAAAAGCATAAAAAAAAATTGAAAGTTTAATAAA11.4705882352941175No Hit
CCTTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGA11.4705882352941175No Hit
TCTTTATGCAAATCTTGAGATCCGTTCTGGCCCAAACACTCCTTAAAAGT11.4705882352941175No Hit
GAAATACCTCCTAACACACCACCACAGACTCCACCAACGCTTCCACCAAA11.4705882352941175No Hit
ATCATATAGCTTTGTATCGGCTAAGTTCACGAGTTGGAGATAAGCGGACT11.4705882352941175No Hit
GTATCAGGAAGTACCGTTTGTGGACCCTCAATATCCACGGGCTTATTAGC11.4705882352941175No Hit
ATCATGAACCAGATTAATTATCAGTAAAATTAATGAAGATTACATAAACA11.4705882352941175No Hit
GTCTAAAACATGTTATGCAAAGTCTTAGAAGCCAAAAGTGAGTTGAACCA11.4705882352941175No Hit
CAATCAAGATGTGTACAGAAGCAACTAAGTCAAGCCAGATTATAATGATG11.4705882352941175No Hit
TACAAATACACTTACAGTAGAATCAGTGCAAACTTTCAAATCAGTAGTAA11.4705882352941175No Hit
GATTAGGAGTGTNTAGACAACACTTATATCCATTTTCTCCCGAAAGAGGC11.4705882352941175No Hit
CCAAAACACTAACCAAGCTTCTTCTTGCTTCTCATTGCTTTGATGGTGTA11.4705882352941175No Hit
AGCAACCAAAGCAGGAATATTATTTAAAACGTGCTGACCTAACCTGCCAA11.4705882352941175No Hit
ATATATACCCACCCTTTTTTTTTTGAAAAACAATGCCGGTGTGGAACTCG11.4705882352941175No Hit
GTCAATATTAATTTGTCAATGTAGGTTAATTTAGTTTGGTTCAGTGTAAT11.4705882352941175No Hit
ATTCAGAATATAACAATAACAGGTACAAATATTAAATTGAGGTACCCATT11.4705882352941175No Hit
GAACTTAACCATATCCATTAATGAATGAATGTATGTGTTTGGTCTGAACT11.4705882352941175No Hit
CAGGAATATACCATCAGATCCCAGTCTATCAATGATTTGTATACACCTCT11.4705882352941175No Hit
GGGAGAATGTAANGCTTACTCCGTGTTACAAGAGTGACCAGTTGATAACT11.4705882352941175No Hit
TTCCTGCTCTTGAATTTCATTTGTCCCATCTCCATTAGATAACTCTAAGT11.4705882352941175No Hit
GGTTTTGACTTTTTGAGATCTGTTTTCTCTTCGATTTCACTGATGAATTA11.4705882352941175No Hit
GTACTTTGGTGTCAAAATGTGACGACGTTATCCGAGAACCAGGAAGATAC11.4705882352941175No Hit
AGAAACCGCCCTTCTATTCTCCAAAAATATGTGATTATTAGGATGTCTAG11.4705882352941175No Hit
ATACAAAATAAGTATCAAACAAATAAAGATTAAACACAACCTATCAACAA11.4705882352941175No Hit
ATCGCAACCGTTCCGTTCTCGATCAAGTCAACTTTCTTCACTTCATTCTC11.4705882352941175No Hit
GAAACAATTACTAAAAAAACATTAAAAAATCAAAACAGAAGACATTTTGC11.4705882352941175No Hit
CTCTGAGAGTGAGAGAATCTCTAGCTAGTTCCTACAAAGTCTCTTTGTGA11.4705882352941175No Hit
GTTTTCATCGTGGTTAAACTCCAACCGGCAGTTACCCTGGAACGGAGTGA11.4705882352941175No Hit
GCACCTTGATAGACCCAACTCGGTTTCTCAATCAAAAGCTCTGATATCAC11.4705882352941175No Hit
TGTTTAATCTACGTGCAATTGAGATCGATCCAAAACTAGATACCGCGTGG11.4705882352941175No Hit
GGTTAACAAAAAAGTTCGTCAATATAACATGCACTAAAACGAACCACTAA11.4705882352941175No Hit
ATAGGGTATACTCTCAACCATTACTTGCCCTTTACTAGATTGTCTGAAAC11.4705882352941175No Hit
CTTCCACGAAGTTCTCTCAACGAAGCAACAACTTGTAACATATTAGGTCT11.4705882352941175No Hit
AGAGACGTCGGCGGAAGGATTTGGGTGATGATGATTATTGATTGATTGAT11.4705882352941175No Hit
GCGCCGGACGGCCTCGACATGGTCGCTATCCACACAACACCCAAACTTTC11.4705882352941175No Hit
TCTTGTCATATTTGACTACAAATCCGCTAACCAAGCTTATTCTTGATTCT11.4705882352941175No Hit
AAAAAAGCAAAACAAAAAACAAAACAGAATTATAAAAAACAAATAGTTAA11.4705882352941175No Hit
GAATAGGGAGTTGTGAGAACGTACCAGTGATCGCCCTGAAGTTTCCGGCA11.4705882352941175No Hit
AACAGAGACAGAACAAAAGACTCAATATTTGAAGCAAACAGCAGAACAAC11.4705882352941175No Hit
ACCATATTGAATTTATACAAACAGAACCACAAAAACTTAATCAATCAAAG11.4705882352941175No Hit
CTATTAACTATTACGGTCAAGCTATTTAGCTACTGGCTAGATGGTGATAA11.4705882352941175No Hit
GTACATGTGTCACATATATTTATATTTATTTATTTATATGTTTTAAAAAA11.4705882352941175No Hit
ATATATATGTAACGACAAAACATCGAACACATTATTATCATAAGTTCAGA11.4705882352941175No Hit
CTCAACAATTATATCGAGATTTTTCAAATACAAAGGATTTACTTGTTACT11.4705882352941175No Hit
ATTTCCTTCAGATTGAGCCGACATCCGTTACGGTCGTCATTCGCTTTAAC11.4705882352941175No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)