FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_088.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_088.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAATATAATAATCAAATAAAGAAATCCATACCATTTAAATAATTATAA10.6896551724137931No Hit
CTTAATGACTAGACAACTATCCTAACAGTCAAAGAGAGGATAGACGAGGA10.6896551724137931No Hit
ATTCTAGGAGATAAATCCACTGAGGAAACACACAAGAACCAGCTGCTCAT10.6896551724137931No Hit
GCCCTGGATTGATCCTCCTGATGTCATTTCAAAGGACATTGAAGAAGGAA10.6896551724137931No Hit
GAGAAAGAAACAGCTCTAAAATGGTAATTAACGAGAAACTAGAGAGTCAA10.6896551724137931No Hit
AACTTATATGACTTCCTGGATTCTGAAAAATTGAAGAAACACCAAAATCA10.6896551724137931No Hit
ATTCCATACTCGATTTCAGAGATACATATATAATTCTGTGGAAAGCCGTA10.6896551724137931No Hit
ACTTAGGCTTTTAAGATCGAATTGCGGTTTAAGTTGTTATACTCATTCAT10.6896551724137931No Hit
GATTTTAACTCTATCTAATAACAAACAAATAAACGAAAAAACAAAAAACC10.6896551724137931No Hit
GTCAATACCAACTCTTCCACCAGGCGCCAAAACATCAGCTATCCATTCAC10.6896551724137931No Hit
AAAAAACCAAAAAAGAATAAACAAAAATATAAAATAAAATTTTATATAAA10.6896551724137931No Hit
ATCTCACACCGGGTAAATCCTTAACCCTTCCCCCTCTTACTAAGACTACA10.6896551724137931No Hit
CCCTTAACTTTAAGGCTATGCCATCCTAAGGTGCTGCTAAATGGAAAGAT10.6896551724137931No Hit
GAAAAGGGGGGGAAAGCTATCCGTTCCTGGTTCTCCTGTAGCTGTATCCT10.6896551724137931No Hit
CTGGTCTGTTCAGTGACTTCCTAGCTTCACTGCACCACATTCAACCCGCA10.6896551724137931No Hit
GGATGGAGTCAGCTAGAAACGCCCCGAGAATGGGGAACATGCAAGAAACA10.6896551724137931No Hit
TTTCATGACATATGCATTTTAGTGTAACAAACTTTATAAAGGAGTCTAGA10.6896551724137931No Hit
CTAAACAACGACGAGAACCTAAACAAATCAGAAATCGAACCCTAATCTAA10.6896551724137931No Hit
CCATGAAAGCTTTGAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTAAAGTC10.6896551724137931No Hit
GGCTTTGTGTCTTCTAACAAGGAAACACTACTTAGGGTTTAAAGATCGGG10.6896551724137931No Hit
AAAATAATAATAACAAAGATATTTACAAAAAAACCAAAAATCAAAATAAA10.6896551724137931No Hit
CCCAATGGTTAACCACAAATCCTTCAACTCTTCCCTTTCGAACTTGGGTT10.6896551724137931No Hit
GGTGTAGGCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGG10.6896551724137931No Hit
TTTTTCTGGAAATCAGAACCAAAAATGAATAATTGAACTTATCAAATTCT10.6896551724137931No Hit
ACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGA10.6896551724137931No Hit
ACATAGAAAGGCAGGATGCCCGTGACGTGTACGTGTAGGATGAACCAAAT10.6896551724137931No Hit
CAGCTCCATCTGTCTTATGGTTCACGATCGCCGACTCTGTAACTGAGAAT10.6896551724137931No Hit
ACACATCCCTTTTACCCATATAAGACCATATTTAATAAAATTGTATACAT10.6896551724137931No Hit
GGAAAAAGAAAAGGTCCAACAAAGGAACAGAAAAAAACAATTTCAACGAC10.6896551724137931No Hit
TTATAACATTTGTTATTGTAGACTTCAAAGCATTATTTTTATTTATATTA10.6896551724137931No Hit
TGATATATTATATTATGTTTAAAATATAATATGTATTTGGATTTCCATGT10.6896551724137931No Hit
TTATATAACCATTCAAACAACTAACTAAATACAAATGAAAATACACCATT10.6896551724137931No Hit
GATCAAACCAGTCTTATCATATCAAATTTAATTTTCACTTCTTTTTTATT10.6896551724137931No Hit
ACACTGTACTCGAAAAGATAGATGTTTCCTCCGGCGAGAAAGCAGTCAAG10.6896551724137931No Hit
AATTAAGTGATACTTAAATCCTTACCAGCTTGATCTTGTTGACCCTGGCA10.6896551724137931No Hit
GAGTGATCCCTTATAAGCATTGCTACTTGCTAGTGGTTGTTTGTAGTGTT10.6896551724137931No Hit
GAAGAGGAATAACACTGTCACCCAAAATTTCCCTAACAGGTCGAGCTACA10.6896551724137931No Hit
CGGCTAAGCTTACTCTCATGACTAGGAACCTCCTCGATAACATCATCATA10.6896551724137931No Hit
ATATACGTATATGCATATATTAAATTTTAGTATTATTCTTATTGAAAATG10.6896551724137931No Hit
ATATACACACACCTATTACATTTTGGCTAATGGGTTTTCATATCTAACAG10.6896551724137931No Hit
TACCAGCAAACTCCGACTAAAAACAACGAAAATTCCCAACAAAAAATACT10.6896551724137931No Hit
GAACAACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGA10.6896551724137931No Hit
GATTCGAGCTTCACGAGATCATCTTCGTGCTGAAACTCTAAAGAGTCATC10.6896551724137931No Hit
ATGCGGGTAAGTAAGGTAGAACCGCAGATTCTAAGAGTTTTAATAAAAAA10.6896551724137931No Hit
GTCTTTGTGTATACAAAAGATGATTATGGTTGTAAATAGACATATGGAAG10.6896551724137931No Hit
TTACTTATCATCACCAATGCTTTAACTTTTCTTTCAACGCAGGGATTTGA10.6896551724137931No Hit
GTGTGAACTCGTCCACCAATTCTGTCACGAGACTCCAATAAAACAACATG10.6896551724137931No Hit
GGTGTAACTGTTGAATCTTAAATGAAAATGTCTCTTCTGTCATCATCAAT10.6896551724137931No Hit
CTTTCATTCTGGGGTGACGGAGGGATCGTACCGGTCGAGCCTTTTTTTCA10.6896551724137931No Hit
ATCGTTCACCGTTGGATCGTTCATTGACGGTAGGAGATGGCTTCCGGCAA10.6896551724137931No Hit
ACACCATAGTATATAGCACTATTGATGCAAATCCCACCTTCTAAGTAGGA10.6896551724137931No Hit
GTCTTCCTCATGCCGATCTTCTTGTAAGAATTTCTTATGCATTTGTCACG10.6896551724137931No Hit
ACCTTTACCTTAGGAGTAATTCATAGAATTGTTTATATCTAAAAAAATAA10.6896551724137931No Hit
ATGTATTATCATTTCAAAATGGTATTTTATGTAAATTAAAATTAATTATT10.6896551724137931No Hit
ATATAAAAGATAGAAAAAAAAAAAAACAGAAAAAAAAAAAAACATAACAA10.6896551724137931No Hit
CAAATATTTCGAACTCCTTACGCTTACGCCTCTCATGGAGAACATCATGA10.6896551724137931No Hit
ATAATCAATTCCGTATTATGTAAAACATTAATAATTTTAGATATAAAAAA10.6896551724137931No Hit
GTTTTGTGCTTNTCTTTTCCCATAAATATTCTTTCAACCTCGTCAATTTA10.6896551724137931No Hit
CTCCTCAGCTCTAACCCATTTTTCTCTTTTAACCTTCTAATTCGTCCTTC10.6896551724137931No Hit
CCATAGTGTATGAGACAAATGTATGCATTTCGATTATGGTCGTATTCTAT10.6896551724137931No Hit
ATCAAAAAAGACTCCAAAAAACTAAACAACCTTCATCTTCATTATAAAAT10.6896551724137931No Hit
GAACTTGGAGTCCGTATCCTAGAGTCCTCAGATTCTCATAAATATGACTG10.6896551724137931No Hit
AAATTGAAGAAGTCCCCACTGTTGTTTAAACAAATGAAATCGCTGCGCCT10.6896551724137931No Hit
AACACGAATAAAACAGCAAAAGTTTAACAGAAGAAAGATGAAAGGTCAAT10.6896551724137931No Hit
TAGTTTCACCATTATAAGCTATAATGTATCTATAGCATGTAGTTTAAACT10.6896551724137931No Hit
GAGCATAAGCTAGTGATGCTTTCGGCTACTGGACTCTCGCCATCTAGGGT10.6896551724137931No Hit
ACACCATATAGAGGACAACTTAACTAAATGACCATCAACATTGAATAAAT10.6896551724137931No Hit
TACACAAACACACTCTACACTGTATCTATNATATTTTTTTCTTGCTTATT10.6896551724137931No Hit
AATCAAAACCGACCATTCACAAGATTAATGGCCGTCGTGACTATTTCTCT10.6896551724137931No Hit
ATTTTATACTCCCACAAACATCAGACAATTTCTCACTCGATCGAATACAA10.6896551724137931No Hit
AAAGAATCATACGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCTAGA10.6896551724137931No Hit
CACTAGCATAATTATCATTTATGTAATTATGACCATGATTTCAATATTTA10.6896551724137931No Hit
CCTTCTATCTGAATGATGGGTCTCAACTCGGGAGGAAGAACCGGTAAGAG10.6896551724137931No Hit
GTCTACAGGAGATCATTCTCTAGCAGAGAGACCAGAGTGCGAAAAGGGAA10.6896551724137931No Hit
GAGAATTCGTCATCAAAAATAAATTCTATAAAAACAAATCAAACAAATAT10.6896551724137931No Hit
TCCATTAAGTGCATTGGATTGGACGAAGAGATCGAAATCCAAGATACCCC10.6896551724137931No Hit
ATAAAGAATATATTTGAATAAAAAATTAGTATTTAAGTAATTTACAAAAA10.6896551724137931No Hit
ATCATACTGAGCGATGGTAACAATTACACAGTTGATTCCATTTCGTGAAA10.6896551724137931No Hit
GTATTAGAGTCTTCACTATACTTCATACCTTCTTGTTCAACCCAATTCCA10.6896551724137931No Hit
ATGCAAGACACTTCTACTTTTCTCTTCATCCAACGTGGTTCGATAAACAT10.6896551724137931No Hit
GCGTCAGGTACACCTGTTACAATTTTGACCGCCCAATAACCAATTTGATC10.6896551724137931No Hit
GGTTTCCTCCCTGTAAGAAGTTCTAGAAGTACAACACCAAAGCTGTACAC10.6896551724137931No Hit
TACTGTAACTTGCTATACTCAATACATACGCATGACGTCACAATGTACGT10.6896551724137931No Hit
ATTCTAGGGTTTGTTCCTTGAGATTTGATCTCCGCAAGGACTTGGTGGTC10.6896551724137931No Hit
CCCCCTGGTCGAGTATCATCACGTCCACCACATCACCTTCACTCGATCAC10.6896551724137931No Hit
GCATTTGTTAGAACTTTAATACAAAGAGGTTGTGTTCCCACTGTTCCTTT10.6896551724137931No Hit
ATGTTAGGCAGGGTCACCGTGATATCAAGGGAACTTCACACCCTCAACTC10.6896551724137931No Hit
CTAAAGGGAATTCAAGTGTGGATTAATAGTTATTCAAAAACACAACAATA10.6896551724137931No Hit
CAAAATACTCATCAATGTTTTTGCATACAAGTTGATGTTTCCATTGGTAT10.6896551724137931No Hit
CATCCAAACATTAAAATTTAACATTAAAAGAATAAAAACATCAAACAAAA10.6896551724137931No Hit
TATCTACACAGAATCCTTTTTCTTGTTGTTGTTGTTGAATCTTGATAAGA10.6896551724137931No Hit
ATACAATGGTACTTCCATGACTGAATCAATTGCGATTGATGCACTCCCAN10.6896551724137931No Hit
CAGTTTCTCATAATCCAATATCTTTCTATGTCCTTTGCCTCTCGTCCTAC10.6896551724137931No Hit
GATTTGAACTGGGGAAAAAGGATTTGCAGTCCCCCGCCTTACCACTCGGC10.6896551724137931No Hit
ATATAGGGGTGGGTGTGTGTAGTGGGAATTTTGCCCGCACGCGCGCGCGC10.6896551724137931No Hit
CTAGTTACATAGAAAAAAAAAATAGGCGTTGTTAGCTTAGTGTTGTGTTA10.6896551724137931No Hit
ACCTGCGAATTCCTTATTCTAGAGCGGTACTTTCTTATCCCCGTATCCAA10.6896551724137931No Hit
GATCCGGAGAGCTTAGAGAAGCACTAAGCCCCGGAAGTCCCACAACCCGC10.6896551724137931No Hit
CTTTTTGTTCTTTCTTTTAATCAGACCGTTTCTGCAGGGAAATTAGTGAA10.6896551724137931No Hit
CTACTGAAAACATGAAATACGACACAAACCAAAAAACTCAAACCTAATAA10.6896551724137931No Hit
AAGCTTCTTCTAGCTTCTCAAAGCTTTCATGGTGTAGCTAAAGTCTGTAT10.6896551724137931No Hit
ATTTAATACAAATAAATAAGTAAACATAAAAAAACATAAAAATACTTAAA10.6896551724137931No Hit
TCCTTGGATGATGAAACTTACATGTTACTCCAAACTTGCAGGTTCGTGTC10.6896551724137931No Hit
GTTTGGAATTCACTTTGTTTGCTCGATTATTAACAACAATATAGATTCAT10.6896551724137931No Hit
ACCTTCTTCTTGCTTCTCAAAGCTTTCATGGTGTAGCCAAAGTCCATATG10.6896551724137931No Hit
AGATAGTGGAGCTACGCACCACATGACATCGGATCTTCACAAACTATCGA10.6896551724137931No Hit
AAAAAAAATTAATAGAAAAAACAATAATATGATAAGAACAAATAAAAAAA10.6896551724137931No Hit
GTTTTATGTGTTCTAACAAGGATACACTACTTAGTCTTTTAAGCTCGAGT10.6896551724137931No Hit
AAAAAATATAGATGATTATGTTTCGTTAGTAAATTTTTAATAAATGTAGC10.6896551724137931No Hit
GATCTATGAATTGATCAGAAGATCCGTTCAATTGGCTAGAATCCGTTACT10.6896551724137931No Hit
GTATAAACTATTCTCTTTGGGGTGGAAGGAGATGAGTAGGACAACACTTG10.6896551724137931No Hit
AAGGAAATCAGACATTGAACCAAAAAAACAAAAGCGAGACGGTGGAAAGA10.6896551724137931No Hit
TATATCCACTTTTTTTTCGGGAGTATATTTATGTACTTGCTTATGATCAT10.6896551724137931No Hit
ATCTAATCCCACCAACTAAGAGCATAGTCGTAAAATTTGGTTGCAGCGAC10.6896551724137931No Hit
CTCGTATTATCAATACTTCTAGAGACACAAACTGGTTCTATCAGGATAAA10.6896551724137931No Hit
CTTTCAAAGTTTCTTCTTTTCCGATGAGCGTTTTTTGTGTTGAGCCGCGA10.6896551724137931No Hit
ATCTATTCTACACAGCTCCTTAAAAGCTTGTGGTTACACAATCTGAATCA10.6896551724137931No Hit
CGAATCAAATCAGATGGTTCCATTTCTCAATCTTTCGGACGTGCTCCTAC10.6896551724137931No Hit
GCTATATACAAATGCAAAGAGAGAAACCTAAAAGTGTTGACATAAAAGAC10.6896551724137931No Hit
GGTAAAGTAAACACAATGTTATCTTCCAGCTTCTACTCTTTTAGTTCTTC10.6896551724137931No Hit
CTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAG10.6896551724137931No Hit
GTCTTTGGCTTTGTGTCTTCTAACAAGGAAACACTACTTAGGCTTATAAG10.6896551724137931No Hit
ACCCTAGCGAGATAATTCCTCCAGCAAATCCAACTGAAGATGGCTGAAGA10.6896551724137931No Hit
ACTCTACAATAGCCTGGGAGCAATCACAAGCAGCCATTGACGACTAACTC10.6896551724137931No Hit
TCTCCATACACTTCAGAGGTTGAGGTGAGTAAAATTCTGTTTCGAAAAGA10.6896551724137931No Hit
GAGCCGTTTTCAAGTAGTGTTCGATCAATTATGTATTAATCAATATTCGA10.6896551724137931No Hit
TTCCAATACCATATGGGCAAGAAAGCCTCTCCTAATAGCATACCCGTGAA10.6896551724137931No Hit
CAACCTATATAACACACACGGAAAGAAAAAAACTAAAGTGGTACGACAAG10.6896551724137931No Hit
CTCATAAGACTGAAAACTGACCATGAACATCTGTTCCGTAACATTCAAAG10.6896551724137931No Hit
ATCATACATAGTATATCATAAATTTCAGAATTAAATGTATGTCCGATAAA10.6896551724137931No Hit
GTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAA10.6896551724137931No Hit
CAATCTCAAGATGACGTTAGTCACGTTACTCTACTCAAGAAACGCAAGAA10.6896551724137931No Hit
GTTAATAACTTAATACTAATAAAAATTGCATACTTTCTTCATCTCCAACC10.6896551724137931No Hit
CTTTCTTCTTTGTCTCCTTCGTCTTCTTCCTCACTACAAGACCAGTACCA10.6896551724137931No Hit
GTCTTAAATGTGAAATGAATGGCCGCCACAAGAGATTCATCATTTAATTC10.6896551724137931No Hit
CATATTGTCCTTGCCTAAAACCCGCCACATTGTAAATACAGCAGCATTAG10.6896551724137931No Hit
TCAGAGGTCAAATACTCAAATGTTGGTATAAAATTCACACCTGAACATGG10.6896551724137931No Hit
CCCGTCAATTTGGGATCCAATTCGGGATTTTCCTTGAGGGATATCTGTCT10.6896551724137931No Hit
GAATATGAGTGTGTGACTTGTTAGAATTGACCCTATGGATAGTACAGAGA10.6896551724137931No Hit
CTTATCCACCTTGCCTTGTACACCCAGCTGACTGCCATCAGCCACTGAGA10.6896551724137931No Hit
GACGATCCTGGTGCTGATAATGGGCTTCTTCTTCTTTGGTAGAGAAGGGC10.6896551724137931No Hit
ACCTTGTCAAATGTAAACCAAGGATAACCTTGCGCCAAGAACTTCAAAAA10.6896551724137931No Hit
GAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAATTGGAGGACA10.6896551724137931No Hit
GATAATCCCCAAAGAAGAGGATAAAAGAGAAGTAACTTGACCAGAAGAGG10.6896551724137931No Hit
ATACAAAGCAAAGTTCACTCAAAACATTACCTAAAGTAGCCGTCTTACTC10.6896551724137931No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)