FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_085.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_085.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCAGATGTTCGCCTTTCTAAGCTAAGTCAAGTAATGGTGACCCGCCTA11.7857142857142856No Hit
ATAATATGGTCCTCAGTGGGGCCAATCTGAAGAAGAAGACGGCTAAGCTG11.7857142857142856No Hit
GAATCACTGTTCGCGACCCCGGATTCTATTTTATCATCAATCCAATCACC11.7857142857142856No Hit
TTCAAATCCAATTCCAATATAGTCCCTATGGGTACATAAGAAATGTATTG11.7857142857142856No Hit
AAGTAACACAATAGCATCAAAAACTAACGAGTCTATACAAAAGTAAAAAC11.7857142857142856No Hit
TCTAAAATATTAGTGGGAAGCTCAAAACTGAGCTTGGTGAAGGATTGTGA11.7857142857142856No Hit
AATTAGGGGTTAAAGAGTGCATGGTGAAATTCGGAACTATCACATCCTTG11.7857142857142856No Hit
GCCTTACATAGTGTATACTGATGCCTCAAGAGGTGGTTTGGGTTGTGTTC11.7857142857142856No Hit
CTCGCTCCACTTCATATTTCTCCCTTCCATCATTCCTCAGCTCCTCAAAT11.7857142857142856No Hit
GACATATAGTGCGACTTGTCAGATATATCGGGCTATATGGGATTTCCCCA11.7857142857142856No Hit
TACCAGTACCCCAAAATGCCCAAAATTAATTTATCCTCAATCACTTGTGT11.7857142857142856No Hit
GGAAAAAGAAATAGAGACAAAAGCTGAAAATATACACACCCTCCAATCAA11.7857142857142856No Hit
ATGTTACCATGAGGAGATCCATTGATCAAAACTGAGAAACTTACTGATTC11.7857142857142856No Hit
CGACCTATATCGCTCATTCAAAATGTGCTACTAGAGAAGATGTGTGGAAT11.7857142857142856No Hit
GCCGAAAATGGCTGATCGAACAAACCCTAGCAGCCACACCCAACAGAGAC11.7857142857142856No Hit
AGCTTGTAGTTGCAGAGATGGTGTCGACTGACACCTTCCAGTGTCGATCG11.7857142857142856No Hit
GCTGCTTATGTTGAGTGTTAATCAGCGTCTCAATGTCGTGAAGCTTAACG11.7857142857142856No Hit
TCTCTATAGTCTATAGTTGTAGAGTTGACTTTTGAGTAGCATAATTTAAT11.7857142857142856No Hit
ATATTAAATGGGTCTGACCAGACACATCATAGACATTACGGTATCTATCA11.7857142857142856No Hit
TTTTATGTACTTCTCAATTATTGCTTTTCCTTATAGGTTCCATTGCTTCT11.7857142857142856No Hit
AACTAAAGAATAACAAATCAAACAAATCTTAAATCATAAAAGTAAACATA11.7857142857142856No Hit
AGATATAGTGTGATAGTGAAGTAGCTCTGTGTGTTGTTCCCCAAATACTA11.7857142857142856No Hit
TCTCCTTTCTTTCTAATCTTCACGTCTTTCGAAAAATCTCTTTACAACTC11.7857142857142856No Hit
GATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCAACTATGTA11.7857142857142856No Hit
ATATAATACAATGGTGAAGTGAGGCGCTTACCTCAGTCGAAGAATGAACG11.7857142857142856No Hit
GTGGTGATCCTTCAATCTTCATTCCTTGATTCACAAACAGTAAGCAGGTT11.7857142857142856No Hit
ATGATTATCTAATCAAAGACGTTAAGATCAATGGTGCTCTCTCCGTCATT11.7857142857142856No Hit
GTATCTATTTAGATACGCTCGAATGACCCCTTCTCATAATGAGAATGTAT11.7857142857142856No Hit
TTCCGACATAACAGCAAAGCAAAATAATGGCATAGAAGATGATCACTTAT11.7857142857142856No Hit
GCAATAACAGTTTTGGGGTTTATAACATTCATAAGCGAACAATAATAAAA11.7857142857142856No Hit
GTACTATTGAGGTCACATTGGATCCAAATTATTCAGATTTGGGATTTGCC11.7857142857142856No Hit
GAGAAGGAGACAAGAGAAGATGCTCTGCTTCCGACTCCAAGATACTCCAT11.7857142857142856No Hit
ATGCAGTACACTTTGGTTGAACGAAGAGAAATAAGACTTAGAAAAGTAAA11.7857142857142856No Hit
GTGTTGTGCCTTCCATTTATCCTCCGACACTCAAATTATATAAAACTTGA11.7857142857142856No Hit
GTATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGAT11.7857142857142856No Hit
GAACAAAGCATCAATACATTCAACGACAAATCAAGAGTATAGAGAGAAGT11.7857142857142856No Hit
CTTTTTAAATGTACAAACATATTCTCTTTTGGTATATATTTCTAGATTTG11.7857142857142856No Hit
GTATTGGAGAAAGACATGTCAGGGCAACATTGTGCTCCAAGAGAGCCTAG11.7857142857142856No Hit
CAACCAGAAAATGCACAAGAAATCTAAGAACCCTAATATCCTGCAGACAA11.7857142857142856No Hit
GTCTCAGGCCATGCTTTCACTTCTTTCGGGCATTCACTTCAAAATTTGAT11.7857142857142856No Hit
ATCTTAATTGAATAACACTAAACTTTAAAATCTATTAAGCATGATTTACA11.7857142857142856No Hit
CATCTATACATAACGAATTGGTGTGGTATATTCATATCATAACATATGAA11.7857142857142856No Hit
GTGTGCATGCAGAGAGGTTTAAAAAATTGATATAGCCATCTATGTCACTA11.7857142857142856No Hit
CTTATTAGCTGCTCTATCTTTTTCTTATCCTTCTTCGTAAATAACTAATA11.7857142857142856No Hit
TTCTAATTATTATAGTGTTTTTTATTTATTTTGCTGTACAAAAAAACTTT11.7857142857142856No Hit
GGAACATCAAGTATCAAAAGCCTGAAGAATAAGTAAAAAAATACAAGCAA11.7857142857142856No Hit
AGCATCTACGTCTGGTGATATACTTTCTGTTCTAAGTCATGAAGGCATTT11.7857142857142856No Hit
GGTTTGACATTGAGCCCTCATCTTGTTTGTAACAAGGCTCCTCCATTGGT11.7857142857142856No Hit
CTATTAACACTCTGGTCGATGGACTTTGTCTCAACGNTAAAGAGGCTGAA11.7857142857142856No Hit
GTGTCTCCTCAGACCTTTCAATGTCTGTTGGTGCCAAGAGGGAAAAGGGC11.7857142857142856No Hit
CTCTTAGATGAAACACACAGGAAACCTGATGGGAGTTTCAGCGACAGAAA11.7857142857142856No Hit
GTTTAGAGCGGTTATTGGCTTTAACAGTCGTTTCTTATTGCCTACTTAGT11.7857142857142856No Hit
GTGCCAAAAGTTGTCATCTGTCTTTTAACCAAACTGAACTGAAGGTGGAA11.7857142857142856No Hit
TATATGCACTATCCATTCATTTAACGTATTATCTCAAGCAAAAACCAGGA11.7857142857142856No Hit
AGCATTGGTTCACTTTCTGTAACACGACGTTAAACCTTCGTCTCCAATAG11.7857142857142856No Hit
CTCAGAAACTTCTACGGAAGAAGAACAAAACAACAACAACAACAACAACA11.7857142857142856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)