FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_084.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_084.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTCAAATTTGTGGTTCTAATCAATTTACGAGATTTCATCAAAGTTAA110.0No Hit
ATTTGGAAGAGCTCATATGTATTAGATTGAAAGATGTAGATACAGAGAGA110.0No Hit
AGCCCAGCCTCTTCAAGAAAGCTTTGCTGGGTAGGCGCTGCCTACTCACT110.0No Hit
CTGTGAGACGTGAAAAGAAACAGATTTTTAGACCTTATCAGTATAGAGTA110.0No Hit
TGATTAATAACAAAAATGATTAATATTACAACTCTTAATCATTAGACATA110.0No Hit
GATCTATGGATATAATCTTGAAGTTTCGTTTGTGGTGTTTGAAGGCATCA110.0No Hit
ATATACGGAAGTATATGCTTTAGGGCCATATATATCTATGTCTGCCCATA110.0No Hit
CACCTTGGCCGACAGGCCCGGGTAATCGTTTAAATTTCATAGTGATGGGG110.0No Hit
CTGTTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGA110.0No Hit
CTAACCAACCTTCTTCTAGCTTCGCAAAGCTTTCATGGTGTCGCCAATGT110.0No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)