FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_083.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_083.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATG31.8867924528301887No Hit
ACAGTAAACCCTAATATTAAACTAGAAATACTAAACCCTAAACTGTAAAC31.8867924528301887No Hit
AAATCATACACGTTGCATTAAGTCATATTCGACTCCAAAGCACTAACCAA21.257861635220126No Hit
CTCTCCGTTTGACTGTGAAACGGTAAAGGATCAGGTTTTGAAATTGCAGC21.257861635220126No Hit
AGTATGAACTTTGAAGATATATCATTATCAAAAGTTACTTTTATTATATT21.257861635220126No Hit
GCTTACACAGAGTGCATGATCTGTACTCTTGAGATGTGTGGTGAAATCTT21.257861635220126No Hit
GGCTTTGGCTTTGTGTCTTTTAACAAGGATACAATTCTTACGCCTTTCAG21.257861635220126No Hit
TCGCTAGATCTTGTCTTAACCCAAAACCAACGAGACGGCCGCTTATGAGA21.257861635220126No Hit
GAATTAAATCAAGTTTAACAAATAAAAACATTTGCTCCTGTTTATCGTAT21.257861635220126No Hit
GCTACAGGGACAAGCATCTAGCTCAATGGAAATGGCTAAGAAATTATCTG21.257861635220126No Hit
ATTTTATCTGGTCTAGTTTCTACCTTTCCAGTAATTCTTGATACAATTTT21.257861635220126No Hit
ACTTACGAGTATAACCATGAAGCGGTTGAGTAGTCCACTCCGAGTATTCC21.257861635220126No Hit
AATCATATCCATAGAATTCGATCTAGCAATAATGGAATTTCTATTCTGTT10.628930817610063No Hit
CAACAAAATAACTTCAAGAAGGCTGGAGTTAAAAGGCAAGTAAGAGAAAG10.628930817610063No Hit
ATATAAAGCGGCACTATTAAGAGTAGTAATCAGCCCCAATCGTGACAGAT10.628930817610063No Hit
TCTCTGTTCCTCTCTTAAACCTCTTTTCTAACTAAGCTCTGTAAGACTCN10.628930817610063No Hit
GTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGGT10.628930817610063No Hit
ATATGAGTCTTTGGATTTGTGTCTTCTAACAAGGATACACTACTTAGGCT10.628930817610063No Hit
TTGTATTACTTATAAAATGTAAATACATTTTGTAATAATTCTACATTTAT10.628930817610063No Hit
ATAGTAATGTCACGTCTCTTAGGCATTTCATCAAACACTTTGTATGCACA10.628930817610063No Hit
GTACTAGGATGGGTGACCTCCTGGAAAGTCCTCGTATTGCATCCCTCTTT10.628930817610063No Hit
ATCTCTATCTCTATCTCTAGAACAAACCTTAATTACGTTCTGTTTAACTG10.628930817610063No Hit
GACTTCTCCTTCCTCTAAATGATAAGGTTTAGTGGACTTCTCGCGACGTC10.628930817610063No Hit
CCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAAAGACTACTTAGG10.628930817610063No Hit
GTGTTTTGGAGTCGAATATGACTTGATGTCATGTGTATGATTGAGTATAA10.628930817610063No Hit
GTGTTTAAACTCAAATATGACTTGATGTCATGTGTATCATTGAGTATAAG10.628930817610063No Hit
AAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATTGCG10.628930817610063No Hit
GTGTATGATTGAGTATAAGAACTTAAACCGCAACCCGATCTTAAAAGCCT10.628930817610063No Hit
AGATATAATGTGTTTGTTATTGCACGATAGGCTCCAAGAAATGGCCATGA10.628930817610063No Hit
CTTTGTCTTTCTCCATTAGTCCCCATATCCATTCCACTATCCCTTCTCTT10.628930817610063No Hit
CCTCTCATTCTTCATCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTAC10.628930817610063No Hit
ATTTTGGCTTTTTTCATTGCTTATATAGCAGTAATGATACAACGAAGCAA10.628930817610063No Hit
GTTCTAATATGACTTGATGTCATGTGTATGATTGAGTATAACAACTTAAA10.628930817610063No Hit
GGGTTGTGGGAGAGCAAAAAAAGCGTCGTGCTGCTAGGCGAAGCGGTGGA10.628930817610063No Hit
TGTAACATGTTACTAGACACATAATTTGTATAGCTATTATTCAAAATTCG10.628930817610063No Hit
GAGTTAGCCCTTTACTTGAAACATTCCATCGGTCCAGCCAGGGCCTATCA10.628930817610063No Hit
CAAGAAGAAGGTTGGTTAGTGTTTTGGAGTCGAATATGACTTGATGTCAT10.628930817610063No Hit
GATACCGCCAAATCTATGCCATGGAAGGAAGTTGAGAATACTCAACTTGG10.628930817610063No Hit
CAGTTACAGAGAATAGTTATTGATTTTATTTTACCAACCAATATGAATTG10.628930817610063No Hit
CTATAGTCCTGGGGCTATTTACAACTAGCCAATTCAGAATTTTCAGATGT10.628930817610063No Hit
CGAACAAAAATAACTAACCTTCACGATATAAGCAGGAGTACCGGGTTGAG10.628930817610063No Hit
TCCCTGTCCCGGGCGGTCCAAACAAGAGATAACCGCGCTTCCATGGCTTT10.628930817610063No Hit
CGCCTAGACAATAAAATATGTTGACATGCGGAGGAACATATTTACTAGTT10.628930817610063No Hit
CCCATATCTCATATTTTCAATAGTTAATGTATTGTATTATATAGCACACA10.628930817610063No Hit
GGATGATCAATGTGAAAGGAGGAGCGGCAGTAGAAGCAAAACGCAGCGTT10.628930817610063No Hit
TCCTAAAACAGAAGGGAATCATGCATATAAACACTTAGCTAGCTAAAGAA10.628930817610063No Hit
TCCCTACAATGACATGGTTACAACTTTATTCTTAAATCAATTTGAAAATT10.628930817610063No Hit
ATACTGAATACTGAATAGATAAAGAGAAATCCGGATTACAAAAAGTCTAG10.628930817610063No Hit
GTGTAATTACAATAAGGAACAATGTCNTTTTGTGATGGGGGTCGTGGGGG10.628930817610063No Hit
GATTAGGCATACAGTCATTCCAACCTATTTTAGTGGAAGGACGCACTATT10.628930817610063No Hit
ATTTAAAACAATATTAACATATCGTTTTAATACGGGTTAAATCCTCAATT10.628930817610063No Hit
ATATACAACAACAAAATCAACAACAAGCACTCATAAATCAAAATGTACTA10.628930817610063No Hit
AAGTGGCTGAACGTGAAAATCAGAACAAAATGTGCTATTAGACTATTGCC10.628930817610063No Hit
GAGGATCATATGTGGCTGGATTTCTAATATCTACATGTGTTCCAAGAATA10.628930817610063No Hit
CTCTTCTCACTATGCACCTTCGTGAGCGTCTCCCCAAGCTTTCTCTTCCG10.628930817610063No Hit
GCTTTGTGTCTTCTAACAAGGAAACACTACTTAGGCTTATAAGATGCGGT10.628930817610063No Hit
GAAGAAGATATATCTACCAAACTGCCGCAATAGTCTATCTTCAGACAAAA10.628930817610063No Hit
ATCATACACATGAGATCAAGTCATATTAGACTCCAAAACACTAACCAACC10.628930817610063No Hit
AAATACGACTTATTTGAAATTAATTGAATGCAGATTTTTTTATAAAAAAG10.628930817610063No Hit
GAATCATGTTTTTTTTTTTGTGATCACCAAATTAAAACAATGAGCTATCT10.628930817610063No Hit
GTTATATCCGTTTAAATTTGTGTACATATAAACAACGACGTCTATAAGTT10.628930817610063No Hit
GTATATGATAACTTCAAATTTATAGTACATGTATATTAAGAACTCAAACC10.628930817610063No Hit
CTTATAAGCCTAAGTAGTGTTTCCTTGTTAGAAGACACAAAGCCAAGGAC10.628930817610063No Hit
TTCTTGGAGACTTCTTGGCGGGAAGGTTTACTGAGGTATTACTCTCTCCA10.628930817610063No Hit
ACTTAGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGAA10.628930817610063No Hit
GTCCATGAACAGCCAACCAGCGCACTGTAAAAATTGGATAGGTCCTATCT10.628930817610063No Hit
GTATGACCATCTCTGTCTGTTCTCCTCATCCCCCTATCATAACTCGGCAA10.628930817610063No Hit
ATTGGAACTCATGGATACCCTAAAATACTTGGACTTTCTTACTCATTTTA10.628930817610063No Hit
GATTACGCATTTCATTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTG10.628930817610063No Hit
GCAGAGCCTATCAAATTCATCAAGTTGGTTGAGTGGATCCTTCATTGGCA10.628930817610063No Hit
AGATTTGCTTTATCTGGTATTAAACGCGAGCTACGAGCAAATAGAACACC10.628930817610063No Hit
AATATATAAATTAAGTATCTACTATAGATCATAAAATTTACCAAAAAACC10.628930817610063No Hit
CCCCTCTTACTAAGACTACAGAATGTTCTTGTAAATTATGGCCAATACCA10.628930817610063No Hit
GATAATTATAGGCAAGTAATAATATGTCAAAAATCAATATATATTAATTT10.628930817610063No Hit
GTATATGAGTTTCTTACATTTTTAATTTGTGGAAAAAAGGAATCCATCAT10.628930817610063No Hit
CCTCCATGACATTGCCTTCATACTCATGAACCAAAACCTTAAACTTGAGG10.628930817610063No Hit
TAATTAACTTAATGTGCCCACTATGTAACTAATGTTTTGACTCCTTATTT10.628930817610063No Hit
CTGGAACGTAGCGAGAACAACGTCCTGGTGCTTTCTTTCCTAAGTCGTAA10.628930817610063No Hit
GTCCAAAGCCGTTAATTCATCATCTCTATACTTTATTTTGTCTTTTCTTT10.628930817610063No Hit
CTCTATATCACCAAGCTTAAAACTTGCACTCAGAAGCGTCGTCCATGAAT10.628930817610063No Hit
GTTTATGGTCAGATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTCT10.628930817610063No Hit
GTCTTTGTCATTCGATCCAATAGCGTTCCGTTAGATATGAACAGATTTGA10.628930817610063No Hit
AAGTTTGGCCTCACGGTCTAAAAGTTATGGAGTCATAAAGTTTTAACCAA10.628930817610063No Hit
TCAACACTCCATATTGAGGTTAAGCTGGTCTTAATGAACCTGTTTGATTT10.628930817610063No Hit
CAGCTTAACATCGCGTGTCATTTTTGATGAAATGGTTCAAGTGGACTGTG10.628930817610063No Hit
GTCAGTGACTGATAACAACAAAAAGGGTGTGTAGCTCATATGGTAGAGTG10.628930817610063No Hit
ATCATACACATGACAACAAGTCATATTCGACTCCAAAACACTAACCAACC10.628930817610063No Hit
ATTTTAAGAAGTGAACATCTTTATTAGTAGCAGGGTCTGGAGCAAGAATA10.628930817610063No Hit
GCTATATACATAGAAAGAAATCATGTACGTGATAATGCAATTATCATGTT10.628930817610063No Hit
TCTATATTGTGTACTCAGGATACTGTCTTCTTGTTCTTAAACGGAGACAG10.628930817610063No Hit
TTGTGAAACAGATTAAACCGGTGATTTTCACGGTGGTTGAGCAAGAATCG10.628930817610063No Hit
CATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGA10.628930817610063No Hit
GAACATGGCTATCTTTGTGGCACCATGGAAGCTCTAAACGTTCCCATGGC10.628930817610063No Hit
CCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGT10.628930817610063No Hit
GATTCTGATATTCTCAACCGATTTGTGCGGATATGCAGAAATATTTCTCA10.628930817610063No Hit
TTGCTTTTCTCCATGACTATAACAATTCGATTATAATCATAAAGCGTAGA10.628930817610063No Hit
GTTAAAAGTTCCAAAGCATTAAAAGATGTAGAGCCTGAGCTTGAAAAGCT10.628930817610063No Hit
GTGTAATGATTTCGAGTAAATTGTTAGATACGTCGATACAATCATGTGGT10.628930817610063No Hit
CTCTCATATCCTAACCTTCCAATAACATTTCAGAACCATCCTCGGTACAT10.628930817610063No Hit
AGCTTACCAAGACCGGCTAAGTATCTGACCGGACCTATGCTCTGTTCTAA10.628930817610063No Hit
CCATCACACTTAGATACATTAACAGCTTCATCTGCCATGCACTCATCTTC10.628930817610063No Hit
GTCGTAGTCATTTTGAATACTTATTTGGTTTATTGTATAAAAAAATCCTT10.628930817610063No Hit
ATATTATACCTTCCTTTTGTATATTTTTATTTTTTGTAATTTTCATTTAC10.628930817610063No Hit
ATCTTAACCCGTAGACCCTGGATATTTGAATCAGTAATGCCATCAAAACA10.628930817610063No Hit
CCATTAGGTTCTTCAATTTGTTCAGAAAAGAAACAAGAAACAAGAAAACA10.628930817610063No Hit
CCTTCACATTGTACATCTTCATGATGAGGTAGAACCGGTCAGCCCAGCAA10.628930817610063No Hit
TCTCCGTAGTTCACAAGTGCTACTCTCCCGATCTCAACGTACCTCTTGAA10.628930817610063No Hit
GTCTTGAAGCTGCACTAGCTCCCCATGTGTTATGAAAATTTATAAAATAA10.628930817610063No Hit
TACTTGAGCTTTATGGGCTTAAGGTATCATCGTTGCTAGATGTTCTCATT10.628930817610063No Hit
GCCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCA10.628930817610063No Hit
CCATTAAGACAAGCTAGAAACAAAGAAACATGGTTTTCTCTGTTTCTATA10.628930817610063No Hit
GTGTTATATCAATCCAAATCCGCTCCACTATATAACTTGTCTCATGATAT10.628930817610063No Hit
TCATCATCATCATCCTCATCGTTCTCCCATTCTGATTCACTGTATGACGG10.628930817610063No Hit
CCATTTGCACAGCGTGTTCCCTCTCTCTCCTTCTTCTTGTATGGTCGTAA10.628930817610063No Hit
CAACAAAAAGGAGAAGTATTGATTGAAGTCGAAAAAAGAACCAATCAACT10.628930817610063No Hit
CAATGATTTTCAATTCATGGAAAACATTAGTATAGAATAATTAATAGAAC10.628930817610063No Hit
GGGAAACATCTTCATTGTTACTCCGTGAAATCCGGGTTTTCTGGTGCGGC10.628930817610063No Hit
GACTCATATGGACATTGGTTACACCATGAAAGCTTGGAGAAGTAAGAAGA10.628930817610063No Hit
CTTCCAGTGCTCAGGTAAATGTTCCTTTCTCGGGTATAAAAAAATTATAT10.628930817610063No Hit
AAGGTAAATGCACAGGTCGATTTACGAGTTCCTCACAAACCGCGAGTATA10.628930817610063No Hit
GTTCCGATGTTATTAATTTTTCATAGGGATATTGAATAGTTACAGGTAAA10.628930817610063No Hit
GGATAGGTCCTATCTATAGTCATTGGGTCCTCCTAAAAAGATCTACTAAA10.628930817610063No Hit
GCAACCGCATCTTATAAGCCTAAGTAGTGTTTCCTTGTTAAAAGACACAA10.628930817610063No Hit
ACCTTGACCACTACAATCACTCATACACTTTCTCTCACCAATTGGCTACC10.628930817610063No Hit
TCCTAGTATTACTCTCGCCCAAGCACCCTTAACTGTTGAGTTCTGATGGG10.628930817610063No Hit
CATTAGAGTTGAGGGAACGGAAGTATCCAGTATTTTCTCACACATGGGCT10.628930817610063No Hit
GTCTAAGTCATATCATCAAATCCGGGACGAATTGGTAAGTCTTCTCTCTG10.628930817610063No Hit
GTACTAGGATGGGTGACCTCCTGGAAATTCCTCGTATTGCATCCCTCTTT10.628930817610063No Hit
TTTTAAAACTTTTTAAAGGATTTAATAGTGTTTTAAAATACTTATAAGAG10.628930817610063No Hit
TTCTTTATGTTGTCGCTCTCTTTGACCGGTTAATTAAATTATTTAATTAG10.628930817610063No Hit
GTATTAAGAATTTTATCGAAAACTTACAGCGGCTTGNCAAACAAAGGCTA10.628930817610063No Hit
GGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGG10.628930817610063No Hit
CTTAGCAGGAGATATATAATACCGATCCACTTCGGATTTTGGAACCCGCC10.628930817610063No Hit
GTGTATGATTGAGTATAACAACTTAAACCGCAACCCGATCTTAAAAGCCT10.628930817610063No Hit
ATTCTACTGAGAAGAGAGCCATCTCCACCACCAACATCAACCAAAGACTT10.628930817610063No Hit
GATATAGTCGAATGGTAAAATTTCTCCTTGCCAAGGAGAAGACGCGGGTT10.628930817610063No Hit
TACTAGGCCCTATACCTGGTCAAAACTGAGTTGGAAACAATAAAGTTGGG10.628930817610063No Hit
GATATTTATTATATTGAAAAGAAGTTTTAAGATATAAACAAAAAAAAAAA10.628930817610063No Hit
ATTAAAGACATATGAAGGATATTAAGGACCATTTTTTCTTCTTTTTTTGG10.628930817610063No Hit
GCTGATTAGATTGTATTAATCGCTTGCTCGCTTCACTTACAATCTCAACT10.628930817610063No Hit
GCTGGCACAACTGCAAGCAGCGGTCTGACGGCATCTGCAAACGCGCGCCC10.628930817610063No Hit
ACTTAGTACCGGTGCTACGGAAAGATATGTTTTTAGATCTCGCATTAGAA10.628930817610063No Hit
GAACAATCGCCAAATGATCAAGGAATTCTTCGCTCTATCACACGGCCTCA10.628930817610063No Hit
CTGTTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGAT10.628930817610063No Hit
GTATTGTTCAAAGGTTCTCCCGGCTCGAGTCCGGTGATGGCTCCTTTCGT10.628930817610063No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)