FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_081.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_081.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCTGCGTCTCCCGCTCGNTCGGCGACAGATTGGTGCTGGACCTGTGAT21.1560693641618496No Hit
GAAAGACATTGATATTGTTCCCACATACTGAAGCAGTAACCAATAGAGTT10.5780346820809248No Hit
CAATTTAAAGGAAACGACAGATAGAGATATGAGAGAAGCAAGCTTGTGTA10.5780346820809248No Hit
CTTGACTTTTCACATTAGCCATTTGCATCAGTTCAAACAAATCAATCCAT10.5780346820809248No Hit
GATCTATGAATACTAACTGTTTGAAGAGGTAAAAGGAAGAGCAGTGAGAT10.5780346820809248No Hit
GAGCTACGGTGAGCATAATTTCTGAACCTTAAATCTTGTGTTTCCCTTGT10.5780346820809248No Hit
TGATCCTTCAGTAAAGGTAGACATAGCTTTTTTGCAGAGGACTCGAAATC10.5780346820809248No Hit
CGGTACGGGGGTCCCGCAAGTGGTGCAGACCTAACTTCGGTACAGTTGGG10.5780346820809248No Hit
CTCTTTATCTACTCACCACAACAAGAAGCAACTCGCTGGTGCTTGATTAT10.5780346820809248No Hit
CTCCACTACAGCGTCAAGGTCATCTAACGAATAGAGCCTCCGATAATACT10.5780346820809248No Hit
ACATCAAATGCATGCATTTTTTCAGATATTTTCATCGTCAGAAAAGCAAA10.5780346820809248No Hit
ATCATTATTCTAATATTAGAGTTTGGGTTTAAGAATGGTTCGATAACAAC10.5780346820809248No Hit
GTGTATAGCTTACAGAAAGCCCGTGCTCGCGCAATGCGAAAGCGTATTTT10.5780346820809248No Hit
TATGAACAGTAAGAACTAGCATTCTTATTGAGACTAGAACTCATAGGGAC10.5780346820809248No Hit
ATCCTACACCTCGCGTTAATGATATCTACATTCAACTGTGCCCCGGAGAC10.5780346820809248No Hit
ACTTAGGCTGCTAAGATCGGGTTGCGGTTTAAGTTGTTATACTAAAGCAT10.5780346820809248No Hit
GGCCTAATGAATTGGGATTTCCCTATTCGGCCGGGTCATTTCGGGGCAAG10.5780346820809248No Hit
CATTTGGAAGGAAGCATGTTAAGGGTCCTGATTTTCCTTATCCTCATATT10.5780346820809248No Hit
GTCCGTCGCTGAGGACGCTTCTCCAGCCTTCAATTCGAACGCCGAAGACG10.5780346820809248No Hit
CTTCCCAATCTCATGACTTGAGTCCCTACCTCTTTGTCTCTCACTACCCC10.5780346820809248No Hit
GAAACGTGCTAATCTTGAGAATCATATGAAGAAGAAGCTTAACGTAAAGA10.5780346820809248No Hit
TTTTAGAACTTGTTTAAAAATATCAATCATGACAATGAAAGAACATGGAA10.5780346820809248No Hit
AGGCGCAGGAATGCTTATTGGTTTGCTTGTGCAAGGGCTGGGTGTTGAAC10.5780346820809248No Hit
CATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAAGAAGAAGGT10.5780346820809248No Hit
GCTCAGGATACCCTTTTTAGCTTCTAGAATCTATTTCTTAGTTCAAGATC10.5780346820809248No Hit
CTAAAAAATACCCTGGAACTTTCAATTTCTTCTAGTATTTGAGTCATCGA10.5780346820809248No Hit
CTCGATCGGAGCGTCAGCTGTGTACTCCGCCGGAGGCGGACTCCATATCT10.5780346820809248No Hit
ATCAAAATGTGGTTACAAGCCCTATGCCTACTTCTTCTGCGAGTTCGTCC10.5780346820809248No Hit
TACTGATACTGTATTTGAAGCAGTTGTTAAAATTCCTTATGATATGCAAC10.5780346820809248No Hit
CTTTCGAGCTGGATCTTNTAGGACAGAGCCTGAAGGCTCCAACCAGCCAC10.5780346820809248No Hit
CCCATTAATACAACACCAACAGTATTGGATTCTAAATTAAGGGCAATACC10.5780346820809248No Hit
ATCATGCGGATGGGTCACTAAGACTATGAAGAGAGTGGTATAGCTAAAGG10.5780346820809248No Hit
ACATTGTATATAGTAATATATATAATTACAGATGTACATGTAATTAAGAA10.5780346820809248No Hit
CCTTTAATCATCACTCAGTAACTAGGCCTTTAAGAACCTTTGGGGGTTAC10.5780346820809248No Hit
ATTCTGGAGCTACAAAGATAGTTATTAAATCGTTAGCACCACATAAAAAC10.5780346820809248No Hit
GCTCCCTCGCTGTGATCGAATAAGAATGGATAAGAGGCTCGTGGGATTGA10.5780346820809248No Hit
CATTTAAATAGGTTTATTGTGTATTTACCATGAGGAAAAATTAAATTACC10.5780346820809248No Hit
GAAAGATAAGACTGAAAAATCAAAATGTTTCAATAGCATTAGCGTCCAGA10.5780346820809248No Hit
AGTTAGTGTTTTGGAGTCGAATATGACTTGTTGTCATGTGTTTGATTGAG10.5780346820809248No Hit
GTCTCTGAACGTGACGGCACTAGACTGTTCCACTTTTGGAAGCTCGTCGT10.5780346820809248No Hit
CTTATCAAAATTAATAAATCCTCTGCCAAGAACCAGATTTGAACTGGTGA10.5780346820809248No Hit
GATATAAGTTTGTTGGTCTCTGTGCAGTCCCCGTTCATAAACAGGTACTT10.5780346820809248No Hit
AATATAACCTTAATTTTTGTAAGTAATTACATAGGTATGCCATTAGAAAT10.5780346820809248No Hit
ATGATATAGATGCGAAACAAAGTCAATATATTTTTGTTCACTTTTAGAGG10.5780346820809248No Hit
CTAACGATAATAAGAATAGATCAAAATACATTCACTACAAAACACGAAAG10.5780346820809248No Hit
CCTTACCGTGTTAATTACCAAATTTTGGTCATTGAGATTCATTGGCAATA10.5780346820809248No Hit
CTTATGAACAAGACCACTCCATGTACTTATGCTTGGACTTAAACCTAACT10.5780346820809248No Hit
ATGCGACATCTTCCTTGTTTTTCTAGTCTATTTTTGTCGAACTCGGTGTG10.5780346820809248No Hit
AACGTAGATAATGATTTCTAGATGTTTTTCTTTAAAGTTGTCATAATGAC10.5780346820809248No Hit
GCGTAACGGGGGTTGTCATCGTACCAGAATGTGCGCTAATGTGAGCTGAG10.5780346820809248No Hit
AGCTAGGTGTACCCTTTAAGTCATTTGTATCATTATATAAAGAGAAAAAG10.5780346820809248No Hit
GAGATACTTGATGTCACCGACAAGATAACTTTCAATAACCATGTAATTAC10.5780346820809248No Hit
CACTTGTGCTTGGTTTCACTTACATCACCGATTCCACAGTCCATGAAAAG10.5780346820809248No Hit
GACACAAAGAGGCTAGCCAAAGCGTTGACATCTCTCGGACTAAGGAAAGG10.5780346820809248No Hit
GACATTTTCAAAAGGTTAGATCCGTCAACGTTTCTTAAGCAACGTTGTCA10.5780346820809248No Hit
CAGCCGGGCCTTTTTTTGTTAAAATTAAAAAGACTCATCCGATGGATTTT10.5780346820809248No Hit
GGTAAGTCCAATAACAGTTATTGTTCTTCTTCAAAATTGAGGTTTAACAT10.5780346820809248No Hit
GTCTGAAGCTTTCCTCTGTGTTTTCGCTGATCGCCTTGCGGAACGAGGGA10.5780346820809248No Hit
GTTTATGATTGTAGTTGTTGTCTTCTTTGTCTTCAAAATTTTGACATGCG10.5780346820809248No Hit
TCCCGAAAGAGATCTTGTGGGAAGAGTGTTGCCAAATTTATACTGTCCGC10.5780346820809248No Hit
ATATATTAATATATGAATTAAATTCTTAATATTTTATTATTAAGCGTGTA10.5780346820809248No Hit
TTATTGTGATTGGCTTTTCGAAATCTGACATGAGTCTTTCAAAAATTTCT10.5780346820809248No Hit
GCATATGCTTGAGCCGACATTGGCTGTACTTAGACTATTCATAAGCAAAA10.5780346820809248No Hit
CGTTATCCTAATCTTTCTCTGTTTGTTTACAGGTTGAGTTAATGGGCGGC10.5780346820809248No Hit
CTAGATAGATTTTCTATGAGGAATTACCTAAACAGTCGAGACTTCTTATC10.5780346820809248No Hit
GAAAAAAAACCGCCTTCCTGCTCCGTAAATACACCCCAGATATTACCGGC10.5780346820809248No Hit
GCCTCTCGCACAGCTGCTGCATCAAGACCCACATCCAGCTGGATTATGCA10.5780346820809248No Hit
CATTTCCACTATTTGTAAAAAAAAAAAAAATCTATAAAGTAAAAGTATCC10.5780346820809248No Hit
GAGTCTCGAGAGCAAGGCGTTGAGCGGATCGACTTTTGCTTTCCCCTAAT10.5780346820809248No Hit
CCATAAACACACAGATGTAGAGTTTACGATAGAGATTTCTCATCTGTACT10.5780346820809248No Hit
CCAATTTGATCCCAAGGTAAAGAATAACCTGTTACACCAAAAGATGCGGT10.5780346820809248No Hit
CAAGGATACAATTCTTACGTGTTTAAGATCCGGTTGCGGTTTAAGTTGTT10.5780346820809248No Hit
ATCAGGAAGTGTGATTTGTAGAGTTGCATTTGGTATCAATCTTCAAGGAA10.5780346820809248No Hit
GCGGCATTGTCATCATATCGTATTATCGTCCCATTGTTACGTTTGAGTTC10.5780346820809248No Hit
CTTTTCCTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCCCCTTCCGGGGG10.5780346820809248No Hit
TTAGGAAACTTCGTCGAAATATTCTCTATTGTGCATGACATCTAAAATGC10.5780346820809248No Hit
GCGTGAAACTACAATCATGGTGGTAGTGGCGGTTTCTATCGGGATTGGAT10.5780346820809248No Hit
TCTCTAGTCTCTCTCTACTTCTCTCTGTGTACAATATTCGGAAAGTGAGG10.5780346820809248No Hit
GCACGAACTATTCGAGAAAATGAGGAGTCATAGAGTTAATATCGACGGCA10.5780346820809248No Hit
ACTAATGTCAAATTAAAGGAGAATATCAACTATAACAAAAACAACACAAA10.5780346820809248No Hit
CTTTATCCATAATACAAATAACATATCTCTACTTGAACGAATTAGACAAT10.5780346820809248No Hit
CATATGGACTTTGGCTACACCATGAAAGCTTAAAGAAGCAAGAAGAAGGT10.5780346820809248No Hit
CTTCCAAATACTGCAAATACTAAAATAATATAGCCAAATTCAGTATTTCG10.5780346820809248No Hit
AGACTGATTACATTGTTTCAACTAAATTGTTTACTCTCAAAAAGATATTT10.5780346820809248No Hit
GTTCTTTACTAAATACTAATAGGTTACATAATTGACTTTGCCACACAAGT10.5780346820809248No Hit
GACGGTAGTTTGGAGATGGACTTACCGATGATACAACTCAAAGAGCTTTT10.5780346820809248No Hit
GTCCATATGAGTCTTTGGCTTTGTGTCTTTTAACAAGGATACAATTCTTA10.5780346820809248No Hit
GTGTATGATTGAGTATATTAACTTAAACCGCAACCGCATCTTAAAGGCGT10.5780346820809248No Hit
GCATCGCGACGAGCTTTCGCCTGACGGTTTTCTCGCCAATCATTCCGGCG10.5780346820809248No Hit
GTATTGAGGACAGCATCCCAAGGTACTGACATGACTCGACTGAAAGGAGA10.5780346820809248No Hit
CCATCCAACTTTGATTTTGTTGTTGTACTCTTTAAGGTATTGAGGAAGAA10.5780346820809248No Hit
ATATACAACATAGCTGTGGAAGAGCCTGTGAAGTTACCAGTTGAGTTTCA10.5780346820809248No Hit
GTTAATATCCATTGTTGTGTTGTGTGTGTGACGACANTTAGTCACTATAG10.5780346820809248No Hit
CTCTATATTACTTTTCATACGGCTAAGAGTCTGATCACGTACCTATTAAT10.5780346820809248No Hit
CTGTTTCTATTTCATATGGAGGATGTATAGGTGACATTCCGAGATCCAGA10.5780346820809248No Hit
ACTTAGAGCAATTTGACCTACATCAAATTCCATTGTTGTACGTGTACGGT10.5780346820809248No Hit
CGTGTTAGAAGNTACAAAGACAAAGACTCATATGGACTTCGGCTAATCCA10.5780346820809248No Hit
CTCTGCTTGTACAGTGCGGAAGAGAAACTTCCCGTCAGCAATTCGTTCAT10.5780346820809248No Hit
AAGCATTACTGTTCTTCAAAAAAAAAAAACAAATTGAGCTATTTATGTTT10.5780346820809248No Hit
TTATTGCAGTAGGATAATGGCTAGGAGGATTTGAAAGGCATTATGGCATT10.5780346820809248No Hit
ATGCCATAGTGTTTGCGAAATCGATTACTTACTGCTTTTGTTTTAAATGG10.5780346820809248No Hit
CTTCATAATCGCCAATAACGAAATTGATGTCAGCTTCCAGACCCCGGAAT10.5780346820809248No Hit
CATTAATGTAATGTGATTGAGGCTGTATAATCATTCATATGCAAGTATTT10.5780346820809248No Hit
TGACAAAACTCAGTGACCTGTTTTGCGGGATATCCACCCTTAAATGATGG10.5780346820809248No Hit
AGCGTATCTAAATAGATACTATGTTTACATAGGGATCCCTACGTCGTTAC10.5780346820809248No Hit
ACTCCCTTTTAATCAATGTTTTTAAGAACATTATCTATTCATGAGAGTTT10.5780346820809248No Hit
ATTGAAATAGTCCTTTCTGATCATAAATGGCCTGTTTTCTCCACTCTTTT10.5780346820809248No Hit
TATAAATAGGAGAGTAGTTTCTTGTTCATGTCATGTCATGTGTGTGAAAA10.5780346820809248No Hit
CCATTGAAACAATTATGAATTCCATTAAGTTTCCCATACTTGATCGAACA10.5780346820809248No Hit
ACTAGATCAGATCCAAAGCTTCCTCTTCCAGGTTCGAATCCTTGATTTCT10.5780346820809248No Hit
CCTTTACAGCATGAAAAGGCGAAGTTTTGGTGCATTTGCAGCATCCAAGC10.5780346820809248No Hit
GGAGCCTATGGGTTGGTTCGAATCAATATGGAATTATTACCCCACGCTCA10.5780346820809248No Hit
GCTTAGAACCAATAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTC10.5780346820809248No Hit
CGTTAATTCTGACTCCTGAGATAGTGCAGATGCGAAGGACGATGTCGGGG10.5780346820809248No Hit
GTTCTTATATTGGGATTGGAGATGGGATTGCCATTAGAGCTTCATTTGAT10.5780346820809248No Hit
GTATTTGTAATTACTAATTTCTCGAAGCATGTGCAATGTCCGCAAGAAGT10.5780346820809248No Hit
GGTAAACACCCTACTGGTACGCCGCTAAACACTCCAATGTGTGTAGCTAC10.5780346820809248No Hit
GCCAAAGCCCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAAACAC10.5780346820809248No Hit
ACCATGAAAGCTTTAAGAAGCAAGAAGAAGGTTGGTTAGTGTTTTGGAGT10.5780346820809248No Hit
GACATCATTGTAGAGAACATAAACGTTGACCAAAATAAAAACATGATAAC10.5780346820809248No Hit
GTGAAAGCGGAACCCTGCATATAAGTGTAGTTCGATGCTTGAAATGCTTC10.5780346820809248No Hit
GGATAAGTAATTATCTGTATGAAAAAATTATTGAAACTGATATCTAAATA10.5780346820809248No Hit
CTGTTGGATTGCTGTTAATGTTATTTCTATATCAAACCAAGGCAAGTGAT10.5780346820809248No Hit
CATTATATAGTTGCAAATTGCAATGACCACTCTTGAAACCAACGGACAAG10.5780346820809248No Hit
TCCCTATTTTTTGTCTCTATATATATAGAAAAAAATAGAGATCTTTAGAA10.5780346820809248No Hit
GTATTTTAAAAAGGTGAGACATTTATCTTCGTTCTTCAAGTTCAAGCTAA10.5780346820809248No Hit
GTTTAATTCCTGACTGAGCCGGTAGTAAATAAAATCTATATATATATATA10.5780346820809248No Hit
CTGGTGTTTCAAACGAGCTGAGCATTAATGCGCCATCAAGTGATTTTGAC10.5780346820809248No Hit
ACACTAATCAATGCTAGAAAAATAAAATAATTAGAGTTGATTATGATAGT10.5780346820809248No Hit
ATATAGCTATAAAAAAAAATGGGATCAAGCTAAAATCAGAACCTTCATGT10.5780346820809248No Hit
CCATTTCGAGCGCTGCGATCGCCATCACCGCGGCGCGCTTGTGATGGTAG10.5780346820809248No Hit
TGTAAAGAGAGACTTCACGAGTTAGTGGAAGAAGAAGCGTTGTCGGATAA10.5780346820809248No Hit
GGATTTTGTAGCAAAGGGGGGAATGATTGGTACTGCAATTGGACCGAAAG10.5780346820809248No Hit
GTTGTTGATGTGCTCTTTTAGAAGATGAGGTACTAAGTGGAAATGAGATT10.5780346820809248No Hit
TTTGTATGATGCATTTTTGAAAAAAGTACAACCAAGCACGTGTCTGAGCA10.5780346820809248No Hit
CTGCAAAATTGTTGTCTGATTTCAACTATACCAATCGATTCTATATCAAT10.5780346820809248No Hit
ATCTTGATGCTCCCCGTGACCAGTTTGTATAAATATACATGGAGACTATA10.5780346820809248No Hit
GATTTATTGGCGCTGCACTTTTTTTCTTGGCAGGAACGAGTTATGATAGA10.5780346820809248No Hit
ACATAGTTGTTAGACTAAGAAATGAAGAAGGTCGTGATGATTGGATCTAT10.5780346820809248No Hit
TACCTTCTGCGCGCCTTCCTCTTCTTTGCCGACATCTCCTGCCGACATCT10.5780346820809248No Hit
TTATATATCTTTACCTCACGGGCAAAACCTGCTTCAACCAAAGAATCATC10.5780346820809248No Hit
TATTTAACGTGGACGTAGGGAGAGAAATAGTACTCATCGAGTGAACTGGA10.5780346820809248No Hit
CATTTGTACAAATAAGAATCCCCTTCGTTACATGATTTCTTCTTCATATA10.5780346820809248No Hit
TAATCATACCGTCCTTCCTCAACTGTTCCAGATTCAGATTTCCCATATTG10.5780346820809248No Hit
CCACTAGTGCGCTTCCTCCCACGCCCGGTAGGCCTCGTGCACCACCTGCA10.5780346820809248No Hit
TGGCTATACCGATGTCCAGCCATGGTTTCATGATCCCGTCGTAGTGTATA10.5780346820809248No Hit
TATTATTACAGATCCTTCAAACAGAATATGACATCAAAATAATTAAAAGC10.5780346820809248No Hit
CACTAATAAAGATAATAATCAATACAAAATAATGGCTTGGGTCATGCATA10.5780346820809248No Hit
AACTGTAGCAGCACCATCCGCTAAAATTTGTCCCTTTTTAATGCATTTAC10.5780346820809248No Hit
GTACTAATGTGAGAAAATCTGTGTACTGTTATTATAGTATACGCGTTTTA10.5780346820809248No Hit
CTTAGGGGCTCAGAGATCGGTGGCTTGGCTACTCACAGGGGATTTTAATG10.5780346820809248No Hit
CCCGTCCTCCTCTCTTTGAAACAAGGGGCGCTTATGGTTCTGTCGGTGCT10.5780346820809248No Hit
TTATAGTACTGTTCGAGGAGTTGATAAGCTAATTCCTGTAGATGTCTATT10.5780346820809248No Hit
GTAGTTATCAGAGTATGGAAGAACCGGTCCGTAACCATTCAAAGAAATTC10.5780346820809248No Hit
AATACTAACCCTTCTTTGATCTTCGCTATATCGTTTGCAGGAACTCGTTG10.5780346820809248No Hit
CTCTGTTTTGGCATCCTGAAGAGATCCTAGGGTTTTCCCCAGTGGACCTA10.5780346820809248No Hit
GTCTAATGATGAGAAAACGCGTTTGTTCCAGAAGAAGCAAAAAAAATAGA10.5780346820809248No Hit
AAGGATAGCTATACTGATCCGGTAGACTCTAAAAATACCCTTGGTACTTT10.5780346820809248No Hit
CCCGAGGACCGGCGAATCGGCGTTGGTGTGGCACGTGTGCAGCGCGATGC10.5780346820809248No Hit
TCCTAAGCTGGTTGGAATGGGAAAGCAGCATACCTATATCGAGACGGAGA10.5780346820809248No Hit
GTAATAGTCAACAAATAGGAATTCATTTATCAACAGATTTTTTTCTGCCA10.5780346820809248No Hit
GTTATAGTATGTTCGAACGTGGAATTCATCATCCTTATTAATTTTGTCTT10.5780346820809248No Hit
CTGTTTCTTGGTAGCAAAAGCTCTTCCAGCGATTCCTTCGCCCCCGAGTA10.5780346820809248No Hit
AATGACATTCTCGCTGCTGATCTATTTTACAGTTTGGTGAATAAGCTCAG10.5780346820809248No Hit
GCCTCAACTCTCACCCCGGAGATTGGATCGAACTTGGAATCGCAGAATTT10.5780346820809248No Hit
GGACAGACATTCTGGGTTGATATCATGGATGAGATAGCTGATAAGCTTCT10.5780346820809248No Hit
CCGTGGTTTCGTGAATTAGGGGGAATTGTCTTGTCTTGTTTATGCTTCTG10.5780346820809248No Hit
CGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAAT10.5780346820809248No Hit
GTCCCATCCGACCCGTCCGACGATCGGTCTGTCCGATCCGTCTGGCCGAT10.5780346820809248No Hit
TTTCTGTAACGCATAGCTCATTCAGAAGCCTCAGACAGCTGCAACAGGTA10.5780346820809248No Hit
GTTTTGAACGCGTGTGAATAGAGCACTCCATACACCTTTCATGTAAGGTG10.5780346820809248No Hit
GACTCATATAGACTTTGGCTACACCATGAAAGCTTTGAGAAGCAATAAGA10.5780346820809248No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)