FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_079.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_079.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1079
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAACTATCATGTCTTTTAGGAAGAAGTTTGATTTCATGCAGCATTCTC40.3707136237256719No Hit
CTCCGGCGAGTGATCTCAATCCCTCCAATTTCAGAGAAGAGCCAAAGAAG40.3707136237256719No Hit
AGCTTCGCCAAACTCGAATGCACACTCGACAAATCCGAAACCAACAGTGA30.27803521779425394No Hit
ACTAAATCTTCAGTTCTATTCATTGTTTGGTATAGAAAAATTGAAGCAAA30.27803521779425394No Hit
GTTCTGCTATGGATCATTTGCTAAATATCCGGCAGACGAGTACTGTTGAT20.18535681186283595No Hit
GGACGAGACGACACATAACGGCAAGGGCAAGGGCAACAGATTTCCATGTA20.18535681186283595No Hit
GTATGATTGAGTATAAGAACTTAAACCGCAACACGATCTTGTAAGCCTAA20.18535681186283595No Hit
GTTGTAGAAAATGTTAGAAATTCAAAATAAAAATTCTACCTAATCTGATA20.18535681186283595No Hit
GTCATCCCACTATGGTTACCTGTAAGACAAGTAGAATCATGAGTAATCTA20.18535681186283595No Hit
GGGCTTGGACAGGCTCAGCCACCGGCGCGCGGAACGAACCTAGCCAGCAA20.18535681186283595No Hit
GTATAATCATTGATCTTTCTCCATGTTACCCTATTGAATGTCGTCTATCA20.18535681186283595No Hit
TTGTAACTAACCCTGACATCATTAGATCACTGTAGCATCATCGTCTCTTT20.18535681186283595No Hit
GATTCACAAAATGCATATTGTTGACAAAAAATGAATGTTGAGGTTTGTGC20.18535681186283595No Hit
GTATGTTCTTTGAGTCCTCCTTANCTGTAGTTTCTGTGTACTGAAGTTAT20.18535681186283595No Hit
GTGGGAAACCTTCCCCGAATACATGGATGCGCTGGACGCCGGCAGACGCG20.18535681186283595No Hit
GATTGACTTAAATCGGTCTTGCCATGGTTCCAGAGTCTTGTGCTGAGCCC20.18535681186283595No Hit
TGACAGACAAATCTAGCCTTGGATACTATTTATGTTGGCCTTGTACTTGT20.18535681186283595No Hit
GATAAACTCTATTATATGTCATGTTCCATTTAGATGAAAAGTAGGGGCGG20.18535681186283595No Hit
GATGCAGACAATACACGTTGTTGGTAACATAGCTAGGCCAATCGTTTCCT20.18535681186283595No Hit
GAGTGTGGCTGTCGGTACCGATGAGCATTTGACCGGGGAAGGCGTATTGC20.18535681186283595No Hit
TCCCTATCCCTCCGTGGTGACTGCAGAGGTAGAAATCATACTCATACGGG20.18535681186283595No Hit
ACTTAAAACAAATCATTGTGTTCATAGAATATTTAGATCAGTACACATGC20.18535681186283595No Hit
TCAATGGAAACAATCAGGTATGTCTTGATCGTAAACAATGCACTTGCAAG20.18535681186283595No Hit
TTCATGTTGTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTTTAA20.18535681186283595No Hit
ATGAGCATCCACTCTTTGTCCCAACAGCTTTTCAGAAGCTCTGTTTTCTT20.18535681186283595No Hit
GATTTAGTAATATCTCTTGCTACTGAGTTATGGCCTTATACATACCTGGA20.18535681186283595No Hit
CTATTACATGCTTCTTAATAACTTTGGAAATTCTAGGTTAGCAACGAAAT20.18535681186283595No Hit
GTTAATTCTAGTCAGATTTGATATATTCATTATAAAGTAGAATAGACAAA20.18535681186283595No Hit
GAATCATGGAGGGATATGTGACACATACCTTGAGTGTGGAGGGTTGGCAT20.18535681186283595No Hit
ACATTGGATCTCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTT20.18535681186283595No Hit
GTTAACAAACAACAAAATCTACCTAAGTAAAAATACCAAATCAACAAAAT20.18535681186283595No Hit
CCTTAATGTATTCAATATCATGAGACAAAAACCTTTCAGTCTCAACCCCA20.18535681186283595No Hit
CAGAATATTTAATACAACTCAAATGCAAATATTTTTCAAATATTCGTAAA20.18535681186283595No Hit
CAATAATGAAGCCAAAAAAGAGCACAACACCTGCAAGAACATATGAGCTC20.18535681186283595No Hit
TTCCTCATGTACCTGTCGCTTGTACGACAAGAAAGAAGTCACGAGACATG20.18535681186283595No Hit
GCTCAGAGAGCCATAGTTCTTAAACCCTATAAAGCTTTGCAAAAACCCAG20.18535681186283595No Hit
CTCCAGGACTTCGAAAAGGTACTTTTGGAACGCCAATAGGCATGAAATGA20.18535681186283595No Hit
GTCTTTAACTGTACAGATGACCAATAATTGACATATGAAAGGATTTTTTA20.18535681186283595No Hit
AAACAAATCTTATCGATCACCATTGAATATGCCTGGTAAAACATGTTCCA20.18535681186283595No Hit
ATCATACACATGACATCAAGTCATATTCGACTTTAAAACACTAACCAACC20.18535681186283595No Hit
CTGTAACACTTCTCTTCTTAGGAACCACATGAACTGGACTAACCCAACTG20.18535681186283595No Hit
CTTTTGATTCAAATATCAATTCTATTTTTTTCATGTATAAATCTTCTTAT20.18535681186283595No Hit
TCTAACTATAGTTTATATCTGTTCTTTTTTTATAATCTTCTTAAGGCAAC20.18535681186283595No Hit
TTATAAGCTAGTCATACCATTTCATTTCATTATATTGACAATTTAAAAAA20.18535681186283595No Hit
CCGCCACCCTGCGCGCGCAGATCGAGCAGGCCAATTACCAGTACCTGTCT20.18535681186283595No Hit
GTGGTGGAGACTTGTATTCCACTTCAGGAGCTGGTGTGTAAGTTGGTGGT20.18535681186283595No Hit
ACAGCGAGCCGATGCACGGCAGTACGATCTGTTTGAGACGCAGCAGGTCG20.18535681186283595No Hit
GAAACATGGGAATACAGATTATAGGTCAAATTGAGAGAATCAATGGTAAA20.18535681186283595No Hit
GACGAGCTCTTCGGCCGCGCGGCCGCCGAGCATGTAGGCCAGCTTGTCGA20.18535681186283595No Hit
GTACAAGCAACATGGATCAGTAGGCATTAGCGTATACACATATGGAGCTG20.18535681186283595No Hit
TGATAAAGAATTGAGCTAGTTTCATGGTGCTTTCAGCGTCCCAAATGCCA20.18535681186283595No Hit
CTTATACTCAATCATACACATGACATCAAGTCATATTCGACTCCAAAACA20.18535681186283595No Hit
ATTTTTTGCGTTTTTACGTTGCAATTTTTATTGAAATTCAGATTTCTGGA20.18535681186283595No Hit
AGGCCACCCCGTCTTTAGAAATAAAGAAGGGCGTGAACTTTTTGTACGCC20.18535681186283595No Hit
ATTATTAACTCGTTGGATTTATTCAGGACATTTTCCATTAAGTAATTTAT20.18535681186283595No Hit
ATGCATAGCTCCTTCCCTCTTCTATGAAGTTGAAGTGAAGCAAGCGAGCC20.18535681186283595No Hit
GCACAATAACAGAATTGGCAACCAAAATTTACAAGCAGTCTATGGCAGAG20.18535681186283595No Hit
TGGTAAAGTGTAGCTGTAACACTGGTTCCAAGTAATCTCAGGTCCAAGTG20.18535681186283595No Hit
CCTCAGAACTCTTTCGGCCAAGAAATTGTNCGAGTGATTTTGGTTAAAAG20.18535681186283595No Hit
CTTATAAGCCTAAGTAGTGTTTCCTTATTAGAACATACAAAGCCAGAGAC20.18535681186283595No Hit
CTCTTATATATATGGTATGAGAACATCATTATAATTCTTTTAAGAAGATT20.18535681186283595No Hit
GGAAAGTACAGTAACAATGATATCAACTTGTATATGAATATACAAAAGTT20.18535681186283595No Hit
GGCTCTTTTGGCTTTCCTCTGTACTGTTTATCTTTACTTTGCAGTCACTT20.18535681186283595No Hit
GCTTACTAACTGTCTTACAATACCGGGCAGATTTGACCGAAATCTGAGAC20.18535681186283595No Hit
TTTCTAGCCTTTTCGTTTTTTAGAAAAAAAAAAAAAGAAAAACGCTCTTA20.18535681186283595No Hit
ATACTATCTAAGAAACCCAAGGGTTCTACTCTTAAAAAAGATTCAAATCA20.18535681186283595No Hit
ATGTAAAAGTCTTGCCCATCCATTCCACAACCCATTATCGATTCACAAGG20.18535681186283595No Hit
GGAGTTACTCCACGTATTGCTTGACGTAAAACAGATAGTGGATTTGTTTC20.18535681186283595No Hit
ATATATATCATTATCAAGAGGTCCAAAGACATTTCTTTTATTAAGGGAGT20.18535681186283595No Hit
GAAAAAGTTGGGATTTGTTAAAAGAAAAAAGACAAAATAATATTAAGTCT20.18535681186283595No Hit
ATGATTTGGTGTTAGACGACCTCTACTTAAGTTGAACATCATCCATTCCA20.18535681186283595No Hit
GTTGATAGGTTCTCATCTAAACAACACTAATGCGAACATTTGTATTTAAT20.18535681186283595No Hit
GTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATTCATTTT20.18535681186283595No Hit
GGATAGATTGATTGGAAGTTTTCTGTGACACATTTCTTTTAGAGTAACTC20.18535681186283595No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)