FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_077.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_077.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTATATTTGATTATGTCAAGGTTGTGTACGTTTGCTATCTCCGGTTA32.7522935779816518No Hit
GTGTGGATTTCAGAACCTACATTTGGCGTCGTCTATGGGGACGGAAATAG21.834862385321101No Hit
GCCTTTGGTGTGCATTGGTCGGCTTGTCCCTTCGGTCGGCGATACGCTCC10.9174311926605505No Hit
CCACTCGCATGGCACAGGAGGTAGAGCGCGAGATACCGCGGGTGCGGACC10.9174311926605505No Hit
ACATCTCACTCCTCCCTTCTTCTTACCCATTGGAGGCAAACCTGAGCAAA10.9174311926605505No Hit
TCCACTCGGACTGAGTTCTCAAACCCTAGACCTTGGCAAATCCTTTGTGC10.9174311926605505No Hit
ATATAGGATTTGGAACGATTTGTATTAAAATGAAAAATCCTATATTATTC10.9174311926605505No Hit
ATAATCCTCAAAGTGTTTCTCTTCTTCTAACTTGGCTTGGTATATTTCAT10.9174311926605505No Hit
ATCTACAAGCTCTTGGTTTCTCCATTGAAGAAAAAGCTTTGACAAAACCA10.9174311926605505No Hit
GTATTCTACATTGATTGTCAGGAATACATGAAGTTCGGTCCGCCGGAGGG10.9174311926605505No Hit
AGACTATTGAGCCTGAGCATGAGTCAGAGGAACGAGTCTTCTACATAGAT10.9174311926605505No Hit
ATACACATGGCATCAAGTCATATTCGACTTTAAAACACTAACCAACCTTT10.9174311926605505No Hit
GAATAAAGAACACTTGTGAAAAAAGAAAAAAAAATTGTCACTCAGTGGAA10.9174311926605505No Hit
ACACAACCGAAGCGACAGAGTGTAGCTAATGAGTTACTGGCGCTCTTGAA10.9174311926605505No Hit
AAACTATTTATCTGACGTCAGCGTAGAAATAAATGTTCTTTGTAAAGTGT10.9174311926605505No Hit
AATAAAAACCTGATCTCAAAACTCATAAACAAAAACCTAGACCTACGAGT10.9174311926605505No Hit
TATTTATCTTTTACATTCATTTACTTTGTCTAGCTTATTTAAAAACATCA10.9174311926605505No Hit
TGTATACACAAAACCAAAACCAAAAATTCACTCATAAATCCGTGATGTTT10.9174311926605505No Hit
GAGTCTCTTTNGTGCATCAGTGTTTGTTGTTATATATCGCTTGAGTTTGT10.9174311926605505No Hit
GTCTCTCTTCTCGTCTCTCGACCTCACGCAAACCATATGAATAACTTATA10.9174311926605505No Hit
GGGACCCTACATGGCAAACTTCTATTGGTGGAGACGGAAGAGAAGGAAAA10.9174311926605505No Hit
TATAAACGCTGGTTTATCAAGAATGCGCAAGAAAAGCACTTCTAATTGTT10.9174311926605505No Hit
GGTTTGAAAACTGTAGTTTATTCGAGAAAAAAATATCATTTACAACATAA10.9174311926605505No Hit
ATATCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAAC10.9174311926605505No Hit
ACACATGATCAAACAATCAATGTATGCTTCCAAATGAGAAAACAATCAAT10.9174311926605505No Hit
ATTGTATTGTGAACAATAGGATAAATTGGATGCATACATATATATAAATA10.9174311926605505No Hit
ATGCAGATGAGGACAACAGAACACCCAATCCAACCTCTTTGCAATATAAT10.9174311926605505No Hit
GTAATAATTTTAATGAAAGTGACATTTATAATTTCATTTGTAGTGAAAGC10.9174311926605505No Hit
TGGCGTCCAGTTGGCGCTGCAGCGCATCAACCCTAACCTCTCTTATGTGG10.9174311926605505No Hit
GAGTATCTTATGGGTAACCTCAGAATCCTTTATTAATGGTGTCATCATCT10.9174311926605505No Hit
GCTTATTCCTTAGATTCCCCCTAAAAATTTTAGCCAATGCACATCACCTG10.9174311926605505No Hit
CAACAATCAAACGAAACAAAATGAAAACTGTAAGCATAATTAGCATTCAA10.9174311926605505No Hit
GGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGCACAGAGTTAG10.9174311926605505No Hit
CCTTAATGAGAGCCTCCAGAATGCTCTGTGCTTGGCCTAGATTGCGTCTA10.9174311926605505No Hit
TATCACCATCACTTCATCACAATCCACACAAAGAGACTTCAAGGGACTGN10.9174311926605505No Hit
TCCACTTCCAGCTGCTGCTTCTAAACCTTCAGAGCAATTGCAGCATTCTG10.9174311926605505No Hit
CTTATAATTTTTACGAAGATTGTAACGAGTTTTTTTTTTTTTTTTTTTTG10.9174311926605505No Hit
GGATTGAATAGTGATGATGACATAATGATAAGAGTAGTACAAATCTATGA10.9174311926605505No Hit
GTTTCCTTGTTAGAACAAACAAAGCCAAAGACTCTTACGGACTTTGGCTA10.9174311926605505No Hit
ATGTTACGACTATTTGATTTAGCGACTTTCGATTTACAACTACACAGTTT10.9174311926605505No Hit
AAAAAGGATACAACAAAATCAACAATAAAAATCAAATTAATAAAATCCAT10.9174311926605505No Hit
ATATTAGACTGGGATAATGTGTGGATTCCTCGTCAATCCCGTCTCCTAGC10.9174311926605505No Hit
CCTACAGAGTTGGAAGGATTTTGTTAGCTACTGAAAATTGATAGAATTTT10.9174311926605505No Hit
CCTTCATGCCTACTATACCTAGTTATTTCGGTTTTCTACTAGCAGCTTTA10.9174311926605505No Hit
CTTATAAGCCTAAGTAGTGTATCCTTGTTAGAAGACACAAAGCCAAAGAC10.9174311926605505No Hit
TTTATATCCAAAGACTCTAAACAATTGTAAATTTTTATTATTAAATTCCG10.9174311926605505No Hit
AGAAACGGCCTCATTTCACACTCACTAGGTGACTTCCACTCGATCTAGTA10.9174311926605505No Hit
GTGGATATTCATTGCTGAGAGATCCTCGCTACAACAAAGGACTTGCTTTC10.9174311926605505No Hit
AATCAATAGAGAAAAGAGCTAAACAACACACATTGGCCCTAAACATACAG10.9174311926605505No Hit
GGACTATACCGATCCTTTAACCACTTCTATTATTCACAAGTCTAGCCTCA10.9174311926605505No Hit
GCATAATCTCTCATTGATGTCTCCAAGACCAACCAAGAGAAAAATAGACT10.9174311926605505No Hit
CTTATAATTGATCACTCATTTTCTTTGAGCATGTGCCAATTTTGTGAAGG10.9174311926605505No Hit
GAATGATGAAATGGTTGGTAAATAAAAATGAAACTAAACTAGGTAACAGT10.9174311926605505No Hit
AAGCGGATGGGGGCCGGCGATGCGTCCTGGTCGGATGCGGTACGGTGCTT10.9174311926605505No Hit
ACTTTTTGCTTTGTTAGAACATATTGGTGTAAAAAGTGGAAAAAAGTTTC10.9174311926605505No Hit
CTCCGTAACCAGTCATCCATAATATCAGATAAATGTTTTTCGTCTATGGT10.9174311926605505No Hit
ACTCCAAAAAAAACAATCCCCAATTCTACGCAAGTGTTTCTACACTAACA10.9174311926605505No Hit
GCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTA10.9174311926605505No Hit
ATGTTCAGCTTTCTTGTCACGGCCTTCGGTGGATTGTGGATCTTTTGGTT10.9174311926605505No Hit
AAACCGATCGCCGGAAAAGTCGCCGGAAAAGTTTTCCGGCGAAAATCCCG10.9174311926605505No Hit
GTGAATATCGGCATCACTACTACAGGTGAAGCTGCAGCAACCGTCAGAGT10.9174311926605505No Hit
CAATTAATCCGATTCAACGAGATCTGGCTTACCAGTTCAGATCCCAAACG10.9174311926605505No Hit
AGTATTATCAATAAAACAAAACAAACAAAAAATAGGGACATTTGCAAATA10.9174311926605505No Hit
GTCATTATCCTATGCAAATCAATAATAATACAAAAATATCCAATAAAACT10.9174311926605505No Hit
AAGTCTAAGAGCTCATTTGGTTCAAATTTGGAAAACCCTATACTTCATCT10.9174311926605505No Hit
TGTTGGAGTGCTGCACCCATTAACTCTTCATTTAACATTAGGTATATCTC10.9174311926605505No Hit
CTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAG10.9174311926605505No Hit
GTACCAGGAGGAGAGAAAACGTCAGAGTCGATTTAATGATGTCTTTTGTT10.9174311926605505No Hit
AAAAACAAAAAAGTTCCAAAAGACAACCAGCGAAACACAGAAAATAGATA10.9174311926605505No Hit
AGATTGGTTCTTTGACGGTACATAAAAGTAATGGTTCTTTGACACACCTT10.9174311926605505No Hit
AGTATAACTAGTCATACTACACATATCTGTATAATACATGTATAATTAAT10.9174311926605505No Hit
CAATTAAGATTGGTGCGGAAAAGAGAAGAGGTCTCAACAAGTATTAACTA10.9174311926605505No Hit
ATATGATACCTTGGTGAGGAATTCATTAGGTTCGCCTAATTTGTAAAGAA10.9174311926605505No Hit
ATATTGGGTTGGATTCTGTTCGATTTAGTATTACAGTAGTTTGGTTTGGT10.9174311926605505No Hit
GCCTCCAACACCTCCCCTTGCTTCTACATCCCATGCCTCTCCTGAGCCAT10.9174311926605505No Hit
GGCGGAGAGTGTCCATGTGGACGGGTTGTTACAGGTATATTACCAACAAA10.9174311926605505No Hit
CTCCCATGCACACCACCAAAAGACAAGAAATCTAACTTCTCTCCTCTTAG10.9174311926605505No Hit
CTATCCATGGAACCAGATTCGTTAGATAGGACATGCTAAATAGATTGCAG10.9174311926605505No Hit
TATTAATGGAGAAAAGAAAAAAAAAAAGAAAAACACAAGAATAAATTAGA10.9174311926605505No Hit
AGTACTAGGTCCGGACATACAAGCATTAAGATTCAACTCAACTAGAAAGA10.9174311926605505No Hit
TTATTATATTATCTTATCGATTTTGGTTATTTTTTACATTGGTCCGATCT10.9174311926605505No Hit
CCAAAAAATTCACAATAAAAAGCTTATCCATAAAACAAAAAGAAAAAAAA10.9174311926605505No Hit
TCTCAATTGCCTCGAATCCATGCTTTGCAATATCGTTATACCTGAAAATT10.9174311926605505No Hit
GCCCCATCTCCTACATCTGCGTCTACTCCCAAAAACAACCAAGGTATGTT10.9174311926605505No Hit
AAACTAATGAGTTCAGATATTAATTAACTCTATAGAAGAGTTATCTATCG10.9174311926605505No Hit
GTTTTTTAAGTGAAAAAGCAAGCGAATCGGCTACCCTTGAACCGGATCTC10.9174311926605505No Hit
GCTCTGCGCAATGATCCTGAACCTGATCAACTAAGCAAAAACCAAGAAAT10.9174311926605505No Hit
GTGCTACATATTTATTTTTGATCCATAATCAGCTAATTTATTTATTACTC10.9174311926605505No Hit
ATGTAATGAAGTGCAAAACTCCTTAAAATGTTTTGTTTCCTTTGCAGTGG10.9174311926605505No Hit
GTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAA10.9174311926605505No Hit
GGAGATTGCACACTTACCTGAACCCTGTAAAACTGTACCTCAAGAATGTC10.9174311926605505No Hit
GGAGAAGACGCGGGTTCGATTCCCGCTATCCGCCCACATCTAAATGGATT10.9174311926605505No Hit
GCCATGGTATATTCAGATGGATGATAATAATTGTCACATATATAGCGTTA10.9174311926605505No Hit
GTCATACTTTCACTCTAGTATCCGAAGATACACTCTAACCTGAGGTTCGA10.9174311926605505No Hit
GCTTACAGATATAGCATTTCGGTTGTCTTTTCGGCTTATATATTTCTGGT10.9174311926605505No Hit
ACTATATATACAACTAAGCCATAAAAACAAAACTCTAAACTCTATCAATT10.9174311926605505No Hit
GATCAACCAGATAGCATTCATCGATCACGGCAATTCCCCGCCACATACTC10.9174311926605505No Hit
AGACAAATGGAACCTAACCATACATGTCCTCCAATTATATCTTCCAAATC10.9174311926605505No Hit
TTATTTGACTTTTAAATTGCGTAATAGTATCATTATAATTCTCTTTCTAT10.9174311926605505No Hit
AAGATAAACTGGATTACATACACGCTTAACTTAACACTACAATCCGACCT10.9174311926605505No Hit
AAGATGTCCTGTTTATAAATCACATTCAAAAGCTTTTTTCTCTACTATGC10.9174311926605505No Hit
GAGATTATTGGGATCTACTATATATCATGTGAGAAAATAATGAGTTTTCG10.9174311926605505No Hit
TCATATATCTCTCCAGAGCAAGATGTCTAGCTTTATCTCTCCCATCCTTA10.9174311926605505No Hit
GTCATATTCGACTCCAAAACACTAACCAACCTTCTTCTTNCTTCTCAAAG10.9174311926605505No Hit
AGATCATACATATCCCCAATCTACCCCGCAACTAGCGGTGGCAAATTACA10.9174311926605505No Hit
ATTTTACTTTTTTGAGATACAAATGGAAGTACGAGTTCCTATTTACCCTT10.9174311926605505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)