FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_069.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_069.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGGAATCCATACTTGAGCAGATTCTTGAGAGAAACTCCAGGCTTGTTG11.5873015873015872No Hit
GGACGTTGGTTAGTGAAGTGGTTGTGGAAGCGGATAAGAAGCAGAGGTTG11.5873015873015872No Hit
GCTGTGAAGAGTTGGGTTATGGATTTGAGTAGAAGCTTACCCGCCATATC11.5873015873015872No Hit
ACATATACAATCTATTCTCTTCCAACGCCTGAAAAAAAATAGAAAAGACT11.5873015873015872No Hit
GAGCCTAAGATTGCTGAAAAGTGTTGCTCTAAATAACCTTCGGCTTCACC11.5873015873015872No Hit
GCTCGTTAATGGCCAGTAAGTAAATCCTGCGAGCAAAGTTTTTGTGTATA11.5873015873015872No Hit
CTCTCACTTTCTTCTTTTTGCGCACCTAACTATCATCTCTCTCTTTCAAA11.5873015873015872No Hit
ACCTTGATAGGAAGATGGCTTATTCCAAAATTCGTGCATAAGGGTAAGGA11.5873015873015872No Hit
CCCAGTCAAGTGCAAAAAACACAGTAGAATCACGCAACGCACGCTGCTGG11.5873015873015872No Hit
TTCTACGAGAATTCCTTTTACTCTTGATCTCTGATCTAATCATTACAATT11.5873015873015872No Hit
AAAATAAACAAAAAAAAATGATCCAAAAACAAAAAATAAACAAAATACAT11.5873015873015872No Hit
GCTTAAGACAGTGATTTCTTGTTTTCTCAGTTCCTAGGGACCCCTTTTAT11.5873015873015872No Hit
CAACCAAAGCTTAGAGAACTTAGCAGCCTCCATCAAAGCAAAATAAGAAA11.5873015873015872No Hit
GGGAAAGAGGACATACATCAGCTAACACAGTTGGCAAAGGAGGAACCACT11.5873015873015872No Hit
AAAAAATATTATTTAAATTATAGCAAAAAGGCAAAAAAGTAAAAAAACAA11.5873015873015872No Hit
AGAGTAATCGATCTGTATCAGAAGGAAATTTTGCTAGAGGAAGACAAGAA11.5873015873015872No Hit
GGATTAGGCAGTTTAGTTGCTAAACCGACTATATCCAAACTCGGAAGCTT11.5873015873015872No Hit
GTTTCGCACCGTTCTCATGTTTATTATCACACCTATTCCCAAAATATCTC11.5873015873015872No Hit
CTATTTCGTTTGGATTGTTTAGTCTAACCAAGAGACAGTATACTTTTACA11.5873015873015872No Hit
CAAGGGAAACGAGAACCAAGATTTGCTTTATCTGGTCTTAAACGCGAGCT11.5873015873015872No Hit
TACCCTAGCCTAGACCTCTTTGTATCATATAGTATATGAAAATTCTGATG11.5873015873015872No Hit
TCATTATATCAAAAGTATTTTCTAATTGTTTTTGAGCGTTTACATTATAG11.5873015873015872No Hit
AGGGTAATGAAATTATCCGTGAAGCTTGCAAATGGAGTCCTGAACTAGCT11.5873015873015872No Hit
TTACTGTGTTTAGTTTTCTTTTTTTTTGTCAAACAATAATTTCCATTCAC11.5873015873015872No Hit
GCATAATGAAAATGGTCAGAAAGAGAGACAAAACCAGAGAGCTCATGTAC11.5873015873015872No Hit
CTCTAAACTACTGTATAACACCATTTGTTTTGTTTTGTTAAGTAAGAATA11.5873015873015872No Hit
CATTTAATTTTTATCATACAGAATAATAAAATAAAACAAAACCACATAAN11.5873015873015872No Hit
TATTGTCATATCTAGGATTGACATATACAACAGATATTACTGTCAAGACT11.5873015873015872No Hit
CGCATGGAAGCATCAATAGCCTGTACAAGATTAGCGCGTAATTGGTGAAG11.5873015873015872No Hit
GATATCATTTGAAAAACCTCTTCCTTATCGCATACTACTCTTTCAATATA11.5873015873015872No Hit
GTTTCTACCCTAACAAAGCAACAGCTCCTTAACGAATTCCCAACTTTACA11.5873015873015872No Hit
GTCTTTGGCTTTGTGTCTTCTAACAAGGATACAATTCTAACGCCTTTAAG11.5873015873015872No Hit
GCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGTGTCGGCTGCTT11.5873015873015872No Hit
GATATTTTTATGGACAATATCAGCTAGGGGTGGGCGCAAGGCGAGTACTT11.5873015873015872No Hit
GTCCTATAAGCAACATCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGA11.5873015873015872No Hit
CTCTAATACTAAATGAGTACACCAGCGCGCGAACAATATTTACTCAGTCA11.5873015873015872No Hit
GTATATTACTTCTATAAATACTAGGACTCAGATCCTCCGCGATATCGCAT11.5873015873015872No Hit
ATCTCATTATTTAGGATAAATTAATATTTATACTAAAGTTTTACCGATCA11.5873015873015872No Hit
TGAGAAACCTATCATTTTTAACCTCTTTTTTTTTTTAGGATTTTAAAACC11.5873015873015872No Hit
GATTTATCTCTGATCCCTCAGTCTACTTTCAATGGTTACATTAGTAAATC11.5873015873015872No Hit
TACCAATGGTCCTATAATACATCATTACATTGTCTTGATCATGTGATCAC11.5873015873015872No Hit
AGCAAATATTGTAGAGCTACTTTTGTAAACGGTGGACCGGAAACGACCAC11.5873015873015872No Hit
GGAACTTCCATGTCCTGTCCTCACATCTCCGGTGTCGTTGGGCTTTTGAA11.5873015873015872No Hit
AGCTTGATTTGTTCAGTTGTTCATATTCATGAAGATTGTATACTCCACTT11.5873015873015872No Hit
GCCCAAGGACATAAGAGAGTCCTAGAAACTATACCCGCATTGTCCACTGG11.5873015873015872No Hit
ATTTTAATGTACTATTATTCAGCTACTATGACACCTTCACAATCCTCTCT11.5873015873015872No Hit
ACTTTGGAAANTTGTGAGAAGCAAGAAGAAGGTTGGTTGGTGTTTAGGAG11.5873015873015872No Hit
ATATTGCATTTGCGGGTAAAAGAGTAATTGAACAAACATTGAAAAAAGCC11.5873015873015872No Hit
AGTTGAAACTGTGGGTAACAAAGGTAGAAGTAAGATGGCTACAATGGGGT11.5873015873015872No Hit
GATCATCTTGCTGCAAGAAAGCTTCAGGTCATTGCTGGTTCGTATGATCC11.5873015873015872No Hit
CATTCACCAGCTTCCCTAGACCAGTCTTTGAGTGGTCTGTCCAATCTGTG11.5873015873015872No Hit
AGCCAAACCTGTACATGAAAATGTCATCACGAGGCCCAAGACTCTTCTTA11.5873015873015872No Hit
ACCCCAACAAAATAAATTATAAGAAGACAATTGATTGATTCGTTTTTGAG11.5873015873015872No Hit
ATGAAAGATTGAACCGTACAATTTTTCTTCTTTTCTTTCAGAGATTGTAA11.5873015873015872No Hit
TCCCAGGGCTCAAACCTGGACAGGCGGTGGAAACTACCAAGCTTGATTAC11.5873015873015872No Hit
AGATCATACAGTTCAAACTCAAACAACAAAGACATTCTAACAGTTGCCTC11.5873015873015872No Hit
GTCTTTGGCTTTGTGTCTTCTAACAAGGATACAATTCTTACGCCATTAAA11.5873015873015872No Hit
CATATGTTTTATAAAAAAACCATGAACTTATGACTCTATTGTTAACCACC11.5873015873015872No Hit
AAGCCAAACAGCGAGCTCGACAAAGAGGAACATGCCTTCCCCGTGCTGGC11.5873015873015872No Hit
ATATGATATTGACCCGATGAACTTGTGATTATCAGATATGCATGGTCCAT11.5873015873015872No Hit
GTGGTATTTTTTCCAGAGATGTTTAATTATATAAAAAATATATACCATTT11.5873015873015872No Hit
TTTGATACCTTATCTGATTTGCATGTATGTATGTCTACAATGACCGACGT11.5873015873015872No Hit
ACCACTCCTATTGGTTAGAAAAATACAGTTTATATATAGACATAAAAATA11.5873015873015872No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)