FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_064.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_064.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACACAAAAAAAACATTAAACACCTAGTCATAAACAAGTAATTCAACAT11.36986301369863No Hit
AATATGAAAAGGTTAGGGCTAGAGATAAATTTCTAAACACGGACTGTCAG11.36986301369863No Hit
GCTCCGGATTCCCAATCATATATTCTATAGGCTATGTCATCTAAAACAAT11.36986301369863No Hit
AGATCCTTGATCTCAGTCGTTCTCTCAAGAAGCTGAGTATCGAGACTTTC11.36986301369863No Hit
CAAAAAGACTAAAACACCACTATAAGAAAATCGATCTGATTAACCTAAAT11.36986301369863No Hit
ACACTACTTAGGCTTATAAGATCGGGTNGTGGTTTAAGTTCTTATACTCA11.36986301369863No Hit
CGTATGAAAGCAATACTCTAACCACTGAGTTAAGTAGGTTATTTATCATC11.36986301369863No Hit
GTAATGGCGAATCGAGGCGGCGAAAACGGGAAATTGGATCGGAAGAAGAC11.36986301369863No Hit
CTTATAAACTTTAATAAATCAAAAAAATTTTATGATTTTAATCTCGTATT11.36986301369863No Hit
CTTTATTTTGTTTTCTCTGCTAAAGACTCTAAATTTCGATGTATTGACTA11.36986301369863No Hit
AGCATAGATTGTTGAGCTATGGGGTATCTGAAGCTGAGATACATGATCAG11.36986301369863No Hit
GAGTATAATAACTTAAACCGCAACCCGATCTGAAAAGCTTAAGTCTGTCT11.36986301369863No Hit
TTATTTATCTATACGAGGATGAAAATATAAAAAATTACGAAGAAATGGAA11.36986301369863No Hit
GTAGTGTATCCTTGTTAGAAGACACAAAGCCAAAGACTGATATGGAATTT11.36986301369863No Hit
GTACAGAAGGATTGGTTTTTCGCTTTTCCACATATCGCTTTTATGTCTGC11.36986301369863No Hit
ACTTCAAGTGGGCGATGGCATCGCTCGTATTTATGGTCTTGATGAAGTAA11.36986301369863No Hit
GTAGCCAAAGTCCATATGAGTCTTTGGCTTTGTGTCTTCTAATAATGATA11.36986301369863No Hit
CCAATAAGACTGCATCAACAAGTTAAAAAACCACGAGTAGACCCTCCTAA11.36986301369863No Hit
TCTGGTTGCTGGAGGATTGGTAAGATTTCTCATTTACTTGTCGATTATAC11.36986301369863No Hit
TTAAACCTAGNGTGGTGATCTGGTGGTAAATTCACTTAAAACAACCCGTA11.36986301369863No Hit
CAACTAAAAAATGCAAAGCTTTTTGAAACATCCACTCTATATATACCAAT11.36986301369863No Hit
GTGTGGACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCT11.36986301369863No Hit
GAATAAAATAAGGATACTGGCGCCTGAGAAANCGAACAAAATTATTCTGA11.36986301369863No Hit
GCTGCATCCAGTTCACAGCTAGCTCACGCAAGTCATCCAAGCGATTGCCG11.36986301369863No Hit
AGAGGGATAAGAAGCACGCTGTTTCATTTTCCCATAAAGAAAACGAAAGA11.36986301369863No Hit
TTTCTTTCCACGCAATGCTTCAGCGAGTTCTATTTCCAGTGCAAGAACCC11.36986301369863No Hit
CCTACTTATTGACCACTGACTCCTAGATCAGCTAACGACTCTTTTGAAAG11.36986301369863No Hit
TTCTTCTTGTTGTCGGTTTGGTTAGTTATAAATCTCTCCCCTGAGTAAAA11.36986301369863No Hit
CCCGATCTTATAAGCCTAAGTAGTATTTCCTTGTTAAAAGACACAAAGCC11.36986301369863No Hit
GTTAGCGGACAGAACCTGGCTGTTGACGGTGGTTACTCGGTGGTGAAGCC11.36986301369863No Hit
GCTCTAATGGTTACCATGAGTATTGTCCTGATTCTTTTGTTGGAAGAAAA11.36986301369863No Hit
GTATATGGTTTAAAGAAAGCTGATACCAAATTTGAAATGAAATATTCTTC11.36986301369863No Hit
GTCCTTGGGGATCCGACATTTATCCTCTCATACCTACTAATTGATGTACT11.36986301369863No Hit
GGTCGTCTAGNAATATGCTAACTAACTTACTTTCTTAAGCAATATGTTTT11.36986301369863No Hit
AGGTTGGTTTGTGTTTTGGAGTCGAATATGACTTGATCTCATGTGTATGA11.36986301369863No Hit
TTCTATAAAAACAAACAAAATAACATAAAATGTAAATATAAAAAACAAAT11.36986301369863No Hit
CTGTCTATCATTACAATCAGTTTTAAACACTAATTAACCATCTTATAAAA11.36986301369863No Hit
CATATCGACTTTGGCTACACCATGAAAGCGTTGAGAAGCAAGAAGAAGGT11.36986301369863No Hit
CATATGGACTGTGGCTAGACNATGAAGGCTTTGAAAAGCAAGNAGAAGGT11.36986301369863No Hit
TAATAGTAGAGGAAGACGCCGCGATCATACAAAATATACGTCTCAGTTTG11.36986301369863No Hit
GTCTTTGACGGCAAAGGATGACAGGAACGTTTCATCGCTTCTCTTGCAAC11.36986301369863No Hit
GGGTCGAGTTTAACTTCCGGCTCTTCGCAAATGTTAGCAGCTGCCTGTGA11.36986301369863No Hit
CACAGGTATGTATCCATCCATGGCTGGCTTATTCCATATAACTCAACTTG11.36986301369863No Hit
ATATATAGAGCAATCTATACATTTTTCCTCTATTTTAGAGTTAATTCTAT11.36986301369863No Hit
CCGCACAGCTTCAATGCTCAGTGCTAACAGAACAACTTGACGACAAAACA11.36986301369863No Hit
CACGAAAATCCCTAAAATCACCGTCGTCGGGTGAGGTTGGTAAGAAAGAC11.36986301369863No Hit
GATGAATGGGCGATGAAAATCTATCGGGTTCGAGGAATGGTCGACCAGAA11.36986301369863No Hit
GGTTTTTCATATCTGGATCTCTGTACTAATGCACAGGGTAGCAGCCTACT11.36986301369863No Hit
CTAAAAACATGTAACATGAGATCACTACTATACCGAATCTTCTTGAGATA11.36986301369863No Hit
GTTGTGCTCATTAGGCGGTTCTAGAGAGTGTTGCACGAGTTAAGCCAAAG11.36986301369863No Hit
GGATACCACATGAAATGTGTCGAGCAGTAATTCGAGACCCTCCCTGGCAG11.36986301369863No Hit
ATATATTCTTTTTTGAAGACTTGATGAACCATTCGCCGTGGGTCCCACCC11.36986301369863No Hit
ATTGTATCCTTGTTAAAAGACACAAAGCTAGAGACTCATATGGACTTTGG11.36986301369863No Hit
CATACTGTACCAGTCTCCGAAAAAATCAACTTACTTGTGTTATGGAAGAC11.36986301369863No Hit
GAGCAAAGAGAAGCGGTTGAAGAACCATGAAGATTGAGAAAACGACCAAA11.36986301369863No Hit
TCCGCCACGTATCGCCCTTCGTCTCCGCTTCCTCTCATCTTCCTCACGGT11.36986301369863No Hit
CTTTCGAAGGTCGTGTCCAGTAAAAGGCTCTACCTTCCATTTAATTACAG11.36986301369863No Hit
ATATACAAAAGAAATAACCCATCAAAAAGAATAAAAAAACAATCAGTAAG11.36986301369863No Hit
ATTATACCTTGTTATGGTATGTGGGATTCTTCATAGAAGTATGATCAAAT11.36986301369863No Hit
ATCGTTCTCTAACAAAAGAGAAAATTTTAGTTTTAGAACCCATCCCACCT11.36986301369863No Hit
CTCACCGGGTGCAGGAGAAGGAGAACCAGGAGGAGTTTCGAGAACCCTAT11.36986301369863No Hit
ACAGAAAAGTGAGCTAATCCAACCAATCTTGCTTGCACGATTGAAAGAGC11.36986301369863No Hit
AGGCAGGACTGCTTTTGTATATGGAAGGAGATTCATCTGGAAAGATAGAG11.36986301369863No Hit
GTATATGATATATTGATACAATGTATGTAGTTATATTACTTATGTATTTT11.36986301369863No Hit
AAGTAAGACCGGACCATGGCTTCAGCCAATGTGATTGCACTCAAGAAACA11.36986301369863No Hit
CAATTATGCTTACATGCCATCAAAATTCCTTACTAATTATTCATGTCCAA11.36986301369863No Hit
TATTAGAGGAGAGACAATTCTAAGATTTGTTACATTATGCCATTTATTTT11.36986301369863No Hit
CCATGAGTCAACGTATCATAGAAACCACGTGTGGTCATGATAATTAGAAC11.36986301369863No Hit
AAGCAAAAATGTGTGCCTTAGTACCTCCATTGTGTCCAAACTTTGGGTGG11.36986301369863No Hit
CAATTATAAAAAGTAAAGAAATATAAATCATTGCATTACCAAATTAAGAT11.36986301369863No Hit
CTCTTATATTAATCTTACTGAAATGGAGACAAAAATAGCCCATATGGTTG11.36986301369863No Hit
CATTGATATCTTCTTTTTCTAAAGCAAATCGACTTCGATTCTTGAATAAT11.36986301369863No Hit
CTTTTCCCTCTTGGAACCAACAGACATTGAAATGTCTGAGGAGACACCGG11.36986301369863No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)