FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_049.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_049.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAATATATAGTATCGTGATTCCTTTTAATTCGACGAAATCTTAACTGCA23.225806451612903No Hit
CACATCCAACACTCGTAATCGTAACTATTGCTACCTACCCTTCTCTCTTC11.6129032258064515No Hit
TGTTTATTGTGAACAACGAGAGTTACGGAAACTAAGACGTAAGTAACAAG11.6129032258064515No Hit
GCCATATGAATCCCTAATGAGAAACCCTATTCCTAACAAGCAGACTACTC11.6129032258064515No Hit
CTGTAAGAATATAGTACAGCCATGTCAAAAATACAAATGAGGTTAATTCA11.6129032258064515No Hit
GCATATATCCAACATATATGTTTAGATCATAAAATACTCCTCATAACCCC11.6129032258064515No Hit
ATATAGGCTCATGAGTTCCTTATAGTCATGACCCAACCATTCCTCTGTTT11.6129032258064515No Hit
ACATTTAACAATCTTTCCAAAATCTCTCCCAATTAACTACACGATTAATT11.6129032258064515No Hit
AAACAGCTGCTCCTTCAAGTGGAATAATAGAAAAAAAAACAGAATCACTG11.6129032258064515No Hit
CTTTTTAGTGTTTTTTTTCTTCCCAATATATATACATAGCATATTTTGAA11.6129032258064515No Hit
CTATTTTCTCTGTATCTTCTCTTGCCCGAGCTACATAATAAACACACAAG11.6129032258064515No Hit
GTTCTGAAATAGCATTAAATACAAAGTAGCAACCTAAACCTTACTATTCG11.6129032258064515No Hit
GCCACCAGAGAGCAACAAGTGTAAATAATCCTATGTATCCAAACAGCTTT11.6129032258064515No Hit
TACCAAGAGAGACAATGTCTCATGTCAAGATCCAAGGCTACGATATTCCT11.6129032258064515No Hit
CCTGAACCTTTTCCCTTTTATAAGCTTGAATATCTATAACAAAAGACAGG11.6129032258064515No Hit
CCTCTCTATTGATACCAAAAACAACATATTAGATGAAGCTGTACACACTC11.6129032258064515No Hit
GAACTAAGTTGGATTATTGTGACAGAGTTGCTAAGAGAAGTTTCAGAGAC11.6129032258064515No Hit
GTCTTATCCTTTGTTGCAAACATGTTCTTATTCGGTACAGAGTAACTTAA11.6129032258064515No Hit
AGAAGAAGAAGAAGAAGCAGCGAAATCAGCTAAATAGTTATATAGTAAAT11.6129032258064515No Hit
GTTCAAATAGTTAATTTAGACCAACATTATCATTAGTTTTATCAAAGATA11.6129032258064515No Hit
GGCTAATCCCGCAATCCTTGCATTAATCCTTTCGCTGAAGGGACTAAACC11.6129032258064515No Hit
CTCATTCTCAACACACTCTCGAATAAAATGATATCTCTTCTTGATATGTT11.6129032258064515No Hit
GAATCACTTGGTCTTGAAAGAAGCTCATCAACGGTCTTGTATACTACTGA11.6129032258064515No Hit
GATAGACCCTTTCTTGGTGGTAGTAATTCGCTCTTGAAGAGCACCAAGAT11.6129032258064515No Hit
TCTGCATCCAACTCTCTTAACAATTCAGCTATGCTTCTTCTGCTGCTGTA11.6129032258064515No Hit
CCTGAAGAAAGAACGCCTGAAATTTATCTTTAGTTACATCTGAAATTTCG11.6129032258064515No Hit
TTACAACCGTAAAACATATTGTTGTCCATTCCATTTTTTCAAAGCTAACA11.6129032258064515No Hit
CGTTTCGGATGCTTTGGCCCAGGCACTAAAATACTTAAGAACAAAAATTC11.6129032258064515No Hit
AGGATACACTACTTAGGCTTACAAGATCGGGTTGCAGTTTAAGTTCTTAT11.6129032258064515No Hit
CCTTTAATCTCTTTTCTTCTGATTTCTACAATATTAATGTTTTCTCAGGA11.6129032258064515No Hit
AGTAGATTCTTTGCATCTAGCTAGAAATAATACATGGTCTTAATAAGCAT11.6129032258064515No Hit
ACCGAGGTGTACCTGGAACGAGACTTCGCGATCCTGACCAGCGTTCACAC11.6129032258064515No Hit
TACTTCAATATCGAGAACGATTTCACAGCAGAGGAAGAAGCTGAGATTCG11.6129032258064515No Hit
CCCAGAAGTTGACTATATAAATTTGTAGAGTCGATTGACCAACATCCAAA11.6129032258064515No Hit
CCGTTCGAAGAAGGTTCTATATCGACATTTAGAGTTGATGTATCATGGCC11.6129032258064515No Hit
GTCTTTATATAGTGTTAATGATAATCACATGATAATTAGCTTATATAGAT11.6129032258064515No Hit
AGAGAAACATGTAGCCATTGAAGGAGACTTAGTGGTGAAACCCTCAGATG11.6129032258064515No Hit
CTCACCAAGGTAAACGAACTAGGTTCCACATTTTCATCCAACGTACACCG11.6129032258064515No Hit
TCTTAGTCCCATATATAACTGAATTTTTCCTTCCCTAGTCACACTTTTAG11.6129032258064515No Hit
CTATTACGCTATATAACAAGTAACAAGAGGCTATTGTAAATATGTGTATA11.6129032258064515No Hit
AGTAATAACAACACCAGCCCAAAGAGGCAAGAAGCCACGGCTAAGAATCT11.6129032258064515No Hit
CTCTAATACTCTTTAGAAGGATGCATCAGACTGCCGTGTTGTTTCCTAAT11.6129032258064515No Hit
GTATAGTTGTATGAGTAAGATTGAANTGAAATACAGTTGTACTTCTCCAT11.6129032258064515No Hit
CTCCCGACTAGGTCCCTGGATACAAGAAAGTCTCAACTCAGGTTCAGCTC11.6129032258064515No Hit
GAAAATGAAATGTTAGTAGGCTGATGATAGCATGAGTCTCTTGTTCTTGC11.6129032258064515No Hit
GTCAGTTCCAAAATTTGTATTATAACAAAACAGTCAGTTCCAAAAGGAAG11.6129032258064515No Hit
GTATTGGGTTAGCATACGAGAAAACCGATTGGTCGGCAGCTCAGTTTGCA11.6129032258064515No Hit
ACTCTGTGTGGTGTCCAAGCTTGTGCTCTCATCTACAGTCCATTCATACC11.6129032258064515No Hit
CTCTTTTGAAAGAAGATCTTTTGTCTCGTGGTAGCCTGCTCCAGTCCCCT11.6129032258064515No Hit
TTATAGGGCTAGTTGAATCTTGTATTTATGTTTGAGACATCAAATTTATT11.6129032258064515No Hit
ATATTAGTTTGCTATACTGTCAAAGACACAAATTTATGAAAGTTGAGTAT11.6129032258064515No Hit
AAATAATAATGTTGCTATTTAGCTTATAATTTTATTTTGGCAAATGCCTA11.6129032258064515No Hit
AGCTTATTGTGTATACAATATGTTATTGGATATTTTTATATTTTATTTTA11.6129032258064515No Hit
CCAGAACCCCGTATTTCTTCTAGACAATCTCCTAATTGTTCCAGAGCAAC11.6129032258064515No Hit
ACATTCTCCTTGATTCTTCGGTGTTCCTCTCGCAGGTTCTTGGTCCAGGA11.6129032258064515No Hit
CTATTACACTCGTAGTCTCTGAAGGATGAGAACCAACTATGTAGCATCTA11.6129032258064515No Hit
GGTTAAGCTTTTTTATTTATTTATTTTTTCTATTCTTTTGACTATATGAA11.6129032258064515No Hit
GTTATGTTCAATTGTTAATAACAAAGTGGCATTTTTAATATATAGGAGGA11.6129032258064515No Hit
CAATAAAATAAGCTTCTCATTGTACATCACTTCTCTTCTGCTTTTCTTTT11.6129032258064515No Hit
CTCACTTACAGCTCAGAGTGTTAAAAAAATGGACCTTTTAGGAATAAAGA11.6129032258064515No Hit
TATGCACACTAGCACACTTGTTCTTCACCTATAGGCCAACACACTAGCAC11.6129032258064515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)