FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_048.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_048.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81
Sequences flagged as poor quality0
Sequence length151
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATAATTACATAAACAAAAAAAAAACTTTATTTTTAAAAAATACAATG11.2345679012345678No Hit
ACTAAACCATGTTTGAATATTATCGGATTTTATAAAGAATATCAATAGAC11.2345679012345678No Hit
AACTTGATGATCCTTTGTCTAGTACTTTAATGGGGTTATACGAGAGAATG11.2345679012345678No Hit
ATATTATACATAGCGTGACTATTCCACCAAAAAGTTTTCTTTTAGTTCAA11.2345679012345678No Hit
GGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGT11.2345679012345678No Hit
GTAGTGCATTAATGTTAAGCCCGTTAATATTTACACTTTTCGAATGAGTG11.2345679012345678No Hit
ATTATTAATTTTCACAAAAAGTTGTTAGTAAGGGGAAAAGTGTGTTGTTG11.2345679012345678No Hit
ATCCAAATCCGTCCTGCTATATTTCATATCAATCAAAACCCGTTCCGCTA11.2345679012345678No Hit
TTAATATTATAGGCATCAAATCTAATCTACGTGGACCAACCAGTTGGAAC11.2345679012345678No Hit
GTATATCTCAATCGCGAAGAACAAAAGGTACATGATGATGATAGGTGACG11.2345679012345678No Hit
TGTTTAACTAGGCCAGAAAAATCGACGTTTTGATCACTCTGCTTTGTTCC11.2345679012345678No Hit
CAATTTTGACTTTCTGATATCCTTTGTTGAATGGCCAACTCCATAGACAT11.2345679012345678No Hit
ATATATATCAGCATGCGACATAGGAAGGTTATTCAATCGACAGAAAGAGC11.2345679012345678No Hit
TGCTCATCTTCCTCTACAACTTCTTTCTCAACAGCCACATCCTCTTGATC11.2345679012345678No Hit
CTAACAAGGAAACACTACTTAGGCTTATAAGATCAGGATGCGGTTTAAGT11.2345679012345678No Hit
GCTATGGAGAAGACACGGACGACAAGTATTGGTGTGAAGAATGCGAAAAG11.2345679012345678No Hit
ACATCTAGGTGGTTAGGATACACATGATCATCCGCACCAACCAACCGGAT11.2345679012345678No Hit
CAGTTTACAAAAATTTATTTGAAATAAAAAGAGAAAGATCAAGAGAAAAC11.2345679012345678No Hit
AAAAAAAACAGAAAAGAAAAACAAAAAAAAATAAATAATAAATAACCTAA11.2345679012345678No Hit
ATTAATCAAATATTTCTAATGTAAATCAAAAACTAATAAAATATTAATTT11.2345679012345678No Hit
ACATCGATGAAGCTACTGCGAAGGCGACGAACATAGAAATGGAGAGTAAA11.2345679012345678No Hit
AAAGAAGCATTACGTGAACAACGTTTTGATTCATATGATCGGAGGGAAGA11.2345679012345678No Hit
AAGTACTAAACATAAACCCTACATCCTAAATCCCAAACCCTAAAATCTAA11.2345679012345678No Hit
AAATATTTTTGGTTTGAAACTTAAATTAGGAACATAATTAATGTTACTCA11.2345679012345678No Hit
ATAGAGTATGGTGGGAAGAAGAGGAGATAAGTACGGGAAGACATAGGGAA11.2345679012345678No Hit
AATAAAAACAAAAACTAAAAAATATGATTTTCTCGAAATCATATATACAT11.2345679012345678No Hit
ATAGATATGATTGATTAATACATGTGAAACTTAGTCATACGACTTTTGAG11.2345679012345678No Hit
TAATTAGACGCTAATTTATTCATTCTATGTGCAAATCGTTGCCTCGTTCC11.2345679012345678No Hit
AAGGTGCATAGTGAGAAGAGTAAGTCAAGAGATAGACTTGTCCAAAAAGA11.2345679012345678No Hit
ATGTTTCTGATAAAATAGTTAATATCTTTGTATCTAAATATGTTACTGAA11.2345679012345678No Hit
GGAGCTATTACAGCGGCAATCAGCAGTGTTGTGGCATTTTCCGTTTTACC11.2345679012345678No Hit
GTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCT11.2345679012345678No Hit
TATTTCACCCGAGATGAAAGAAAAGATAGGAAATATTTCTTTTCAGAATT11.2345679012345678No Hit
GGAATGTACACATATGGTTCATATTCAATAGTCGAATCGTCTGCATCACC11.2345679012345678No Hit
TGATAAGAAGGGTGGCGAGAAGAATATCCTTGTGTTTGATCTTGGTGGTG11.2345679012345678No Hit
TCATTACACCACGCAAAAGTCTTTTACGTGTATAACCAAACGTACATGAA11.2345679012345678No Hit
GATTCATATCTGAAAGAGTTTGACAATACGTTCTTTCAAAATTGACTCTT11.2345679012345678No Hit
AGAAACAATATTGGCGGTCTAACCTCAAAAAACTTGTCAACATGCATAGG11.2345679012345678No Hit
TACCAATGTATGTGTGTATTTTTCTAGCATCTTGTGGCGCGCAAAGAGCA11.2345679012345678No Hit
CTTATATATATCCTATGAATTTAATTTCGCATCGGAAACGATTCAATCAG11.2345679012345678No Hit
GAATATATAAAAAAAAAATATTATAAAGAAAAAACGCAAAAAAAACTCAA11.2345679012345678No Hit
ATTTAATGTTGGATTTAAAATATTCTCCTACCATCCTATCAATCATAACT11.2345679012345678No Hit
AATTGATAGAGGAAGCACCGTAAAGATCAATTGGAAAGGTTTTGGACCGA11.2345679012345678No Hit
GTATGAACATCTAAACAAGATGAATTCACGCAACATCGCTATGGTTTTCG11.2345679012345678No Hit
GTACCACACGGGAAAAAGAATGTCTTGAAGCCTGCGGTTCCATCATTGAA11.2345679012345678No Hit
TAAGCGTGCTTGGGCGAGAGGAGTACTAGGATGGGTGACCTCCCGGGAAG11.2345679012345678No Hit
CTTTAACTTCTCCTGCATTTCCAATTTTTGCTGGTAGCTCATCTCCTGAG11.2345679012345678No Hit
TCTTTATTCAGATTATAAAATCGAAGGGATTCTGTTTCATTTGATGGTAT11.2345679012345678No Hit
CATTTAAACTAGAAAAAAAAATAGAACCAAAAATATAAACAAATCAATCT11.2345679012345678No Hit
GTTGTCTTCTCTAAACCAAAGTAAACCGAACCGAGATCAATTTGAATTTC11.2345679012345678No Hit
AGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATG11.2345679012345678No Hit
AGTGTGAGGAGTCAAGCTAGAGACTCTAAACAAGCTCACTTGGGAGGAAG11.2345679012345678No Hit
AATTTATACAAACTGGCCAGAAAATACAAGAAGATTAAAAAACTGTAACA11.2345679012345678No Hit
ATCAAGATGTAAAATGGTTTGAGCGTTGATTTTTACATTCATTGCCGCGC11.2345679012345678No Hit
ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAAC11.2345679012345678No Hit
ATATCAAACTTATATTGAGACTGTATGAAACTATATTGCAATGCAAAGTA11.2345679012345678No Hit
TAATAATAGAGACAACAAGAGAAAGAAAAAACAGAGTGATCTGTTTCAAA11.2345679012345678No Hit
CCTTTCATCTCTACGGCTTTACCTTTCTTTTTTTTTGTCACTCTTTACGG11.2345679012345678No Hit
GGGGCGGCTGGATCACCTCCTTTTCAGGGAGAGCTAATGCTTCTTGGGTA11.2345679012345678No Hit
GGGATACACATAGCCAGAGGAGACCCAACGATAGTGATGATGATGACGAT11.2345679012345678No Hit
ACATTAACAAATATCCAGAAAGTAATTCATTCACTGTAAAACTCTCACAT11.2345679012345678No Hit
GAATACCCTAATCTAATCCATCCTCAAGAACCCTAATCACTACTCAAGCA11.2345679012345678No Hit
GTGTAATATAACCAGCTTCATTGTTTCGAGGCGATTTTCACTGTGACAGA11.2345679012345678No Hit
ATGTGAATATGACCATTATATACACAAAGGGATACCTTGACACATAAAGT11.2345679012345678No Hit
GATTATACTTAATAATTATTACAACTACCTCCTTGTGAATCTGGTTGAAA11.2345679012345678No Hit
TCTCTTGAGACATTCCACAAAATGGTGGTTGAAAACGGAGGGAAGTTTTC11.2345679012345678No Hit
TCATCATATCTATCAGCAAGAGCTCTACTTTTAGCCATGGAAGACTCTAG11.2345679012345678No Hit
CATATAAAGAAAAAAAAATCACTGTTTAACATGATTTAATAGTGTTTATT11.2345679012345678No Hit
ATCCTAAACACTAAACCTAAACTCTACACCCTAAATCCCAAAACCTAAAA11.2345679012345678No Hit
TGTCTTTTTCATGCGAATAAAATCCATTGCTCATTAATGGTAATTTGTCA11.2345679012345678No Hit
ATCATGTAGGCTTTGTTAGTGCACCCTCTATCAGGACAGACCAGAAGGAG11.2345679012345678No Hit
ACTGTAAACATATGGTGGTGGAGGAGAGTTGTAGTCTACCTTAGGAGATG11.2345679012345678No Hit
CCATTTATTCTGGTGTGGATGGCAGGCAGGCCTATATTTCTTGGTTTCAA11.2345679012345678No Hit
CTGTGATCAAATATTACTAATTATTGCATTGATGGCTTTGAATTCGATTT11.2345679012345678No Hit
GGCTTGGCAGAATCAGCGGGGAAATAAGACCCTGTTTAGCTTGACTCTAG11.2345679012345678No Hit
GGGCATAAGGGTCTTTATGACACAATCAATAATTCGATTCATTTTCAATT11.2345679012345678No Hit
TATTCGACTCCAAAACACTAACCAACCTTCTTCTTGCTTCTCAAAGCATT11.2345679012345678No Hit
ATCAATCGAAGGACGTCCAGAATTTTGTTTAGAAAAACATTATTTGATGC11.2345679012345678No Hit
AATTAAAACCTATTCCTTACAGTACCAAATGCATTAAAAATTCTAGATAT11.2345679012345678No Hit
TAATAGAAACTACTTAGAAAACAAAATAAAACTTTAGTGAATAAACAAGA11.2345679012345678No Hit
AATAAACAATTAAACCACTAAAAAAATCACATACAATACAACAATAAATA11.2345679012345678No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)