FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_043.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_043.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTGCAGGCGTTCTATTAGCTAGAGCATTTTCCTCAACACATTCCGGGC22.4691358024691357No Hit
CTTGTACTCAATCATACACATGACTNCAAGTCATATTTTACTCCATAACA22.4691358024691357No Hit
CCATCGAACCAGCCCAACCAGCAACTAGAGCAGTATGCATTATATGAACA22.4691358024691357No Hit
TACTAACGGATGCGATCATACCAGTACTAATGCACCGGATCCCATCAGAA22.4691358024691357No Hit
GTTAGAAGACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGA22.4691358024691357No Hit
AGGTTAAGTAGTAGATGAGAAGAGGTTGCTGCTACAACCTAAAAGAGGTT22.4691358024691357No Hit
GTTCATTACAAATCTCCACGACCACCATACGCGTATAACTCTCCACCTCC22.4691358024691357No Hit
ATCTAATTGTGGGCACAGAGATAGTCAAAGCAGATCTTGCTTCAAAGACA22.4691358024691357No Hit
AAATCGAGGAGCAATGTATTGAGGTTAGTTCTCAGACTTCTGATACTTGG22.4691358024691357No Hit
GGTTGCTCTAACATGCCCATTGAATTGGGTAAATTGTGTAAAGGCCCATC11.2345679012345678No Hit
ATTTACCTGGAGCCGGCGAGCCTGCGCATGCTCACGCTGGGGTTTTCGGC11.2345679012345678No Hit
TAATAATACCGCTTACCCTAGTGAGTTTTACGGACCTACGGGGCCAGAAG11.2345679012345678No Hit
TTGTAAATCTTTGAAATTAACCCCACTTGGTTCCCAAACATCCTTCGACA11.2345679012345678No Hit
GCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT11.2345679012345678No Hit
ATATAAATGGATGGATAAAAAAACCAGTTTTCCTTATTCCAGGAAAAAAA11.2345679012345678No Hit
GTGAGTATGCTTAGACCCTTACATTATCTTTATGATACTAGCCGATAATT11.2345679012345678No Hit
ACTTAGGCTTATAAGATCAGGGTTGCGGTTTAAGTTGTTATACTCAATCA11.2345679012345678No Hit
ACACAAAGCCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTG11.2345679012345678No Hit
GAGAACAAAAAGTTAGAAAGTTGTTGTCCAATTGGACCCTATGGGTTTAT11.2345679012345678No Hit
GGGCGGGCGGCGTGAACTCTGATTCGATCCGGGTATTCAATCCCGCCGCT11.2345679012345678No Hit
GCTGAAAAGGATATTGCTATGGAAGGTGGTAGCGCAGAGAAGGTAGTTGG11.2345679012345678No Hit
CATTTTCCAAAAAGGGTACGGTTAATAATCCCGCTGGTACTGAAACCATT11.2345679012345678No Hit
GCTCATTCGCTAAGAGTTATATATGCTTTAACATCAAATTTTGCAGAGCT11.2345679012345678No Hit
AATGTACTTATATTAGTTAACAAGCTGATCGAAAAATGAATTTGATATTG11.2345679012345678No Hit
TCAAATAATAGATCCAACTACAGATCCTTATGATGGGCATATCTATTGTT11.2345679012345678No Hit
ATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTA11.2345679012345678No Hit
ATCCTGTCCAATGAATTACTAAGATTTATTTTTCAATAGAATCCTCTATA11.2345679012345678No Hit
ATGCTCTACTCGACCACACAGTCATGATTTGATACAATTATCATGTCTTA11.2345679012345678No Hit
GTATTACGCAATAACATGATCTCACTTGGTCTGTGTGTTTTTTTTCTTTT11.2345679012345678No Hit
TGGTGATTGAGTTTGGGACTAGGTTAGCTTGAGAGTCTCTGTTGCGGTGG11.2345679012345678No Hit
CGTTCGACGGGAAGAGGTACAATTGTATTCCGGCCTCATTTTAAAATTTT11.2345679012345678No Hit
CAATCATAGTATTCATTCTTATGGGAATGGGAATGAAAAACAAGAGATTC11.2345679012345678No Hit
AGTGAAGGTTCCTCCAGGTTGTGACCGTACTGTCACGTTTTCACTCTCAT11.2345679012345678No Hit
GATTAGGGTCGTATTCTATGGTTACGATTCTACCATATATGTCTTTTGCA11.2345679012345678No Hit
ATCACAAGCTCCATGGTTGATTCCAGTCATGACTGTAGTTGTTCTTCCAT11.2345679012345678No Hit
AAACTATAGTGTGTTAAATGTGAGGAGAGCTGGAGGAAGCAAAGCCTTTA11.2345679012345678No Hit
ATTTAGAACACAAGGGTTAATTATAGCACATGTCTATGATTAATCATATA11.2345679012345678No Hit
TCATCAAATAGTGCTTACGACAATTCCCTTAACACCGTTTAACTTTTGTT11.2345679012345678No Hit
AAGCAATGGTGAAGACAAACGATTTATCAAGAAAGTTGCAGTGATTACAC11.2345679012345678No Hit
GGATCTAGGGTTAGTGCGAATTAATAAGTTGGAACAACTTCGTAAGTCTT11.2345679012345678No Hit
TTCCATTCTGTGTAGTTCAGATAGCCGGGGTGGCTCAGCTAGTGGTAATC11.2345679012345678No Hit
CTCCTTGCATAATATGGATTCCAAACATTCATGATCTTGATGTGAATGAG11.2345679012345678No Hit
GGGTCATTTCGTGGCTCAGTTTGAAATGAGCATTTTCGAACCTCATGTTT11.2345679012345678No Hit
GTCATTGTTAACTATATATGAATGTTATGTCATCATGTTTCCAACGTTGG11.2345679012345678No Hit
ATGTATATATAGATATATGAATACGTAAATTTACAGGTAATGTATTTATG11.2345679012345678No Hit
TCACTGTTTTATACCATTTCTCATCATTTATCATCACTTTACATGTTTAG11.2345679012345678No Hit
GCCAAAGACTCATATGGACTTTGGCTACACCATGAAAGCTTTGAGAAGCA11.2345679012345678No Hit
ATTTACATTCCATCACATGGAATGAGTGAAATGTTAGAAGTTCACGGAGA11.2345679012345678No Hit
GCAATAACATACTTCGGTTCAGGCATTTGTTCATATAATCGCACTAAAGA11.2345679012345678No Hit
GCTTTGTGTTTCATCTAGCTCTATTCTTAATTCCAGATTGAAAACTAGAG11.2345679012345678No Hit
CACTTATTGATATGTGAATATATCTGTGTATGAAGTTATCTTAGATACTC11.2345679012345678No Hit
CCACCATCTTGATAGCTCGGTCAAGAAGGTTCATCTGTCAAGATAATTCA11.2345679012345678No Hit
ACTATATATGAAACAGTATGAAAGAAACAAGATATGAAANACAAAGGGAA11.2345679012345678No Hit
GAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAA11.2345679012345678No Hit
ATTCTTATTCTTATTCGCGCGCGCGCGTGCGGGCAAAATTCCCACTACAC11.2345679012345678No Hit
ATGAGCACAGGTTTAAATAATTTCGGCCGTATGGCCCAAAATTGGATTGT11.2345679012345678No Hit
ATTTTGTGATTCGAAATTTTAAGAATGAACATATATTAACCAATTGGCGA11.2345679012345678No Hit
ATGTATATATAGATATATGAATACGTAAATTTACAGGTAAGGTATTTATG11.2345679012345678No Hit
AGATAAATTTTATTTTGTACTTTTGCAGCTCCTATACAAAAGAAAGGAGA11.2345679012345678No Hit
GTTCTCGTGTGTTTTCATGTGAGGTACACGCACCTACGTTTGATGTGTTG11.2345679012345678No Hit
GACTTTGGCTACACCATGAAAGCTTTGAAAAGCAAGAAGAAGGTTGGTTA11.2345679012345678No Hit
CTCTCATTCAATATTATTTTTTATTATTTAAAGATATGAAAGAGTCAAAA11.2345679012345678No Hit
TTATAAATCTGAGGGTGATACGTAAGGAACTCCATTATCAAATTCTTAGG11.2345679012345678No Hit
CCTCTCAATGATGGTATCTAACGAATCATCGAGCATTGTAGAATTTTCAT11.2345679012345678No Hit
TAATATCTTATATATAGTTAATAGTCATTAATAAAGAAAAATTTTTCTTC11.2345679012345678No Hit
ATCATAGATCGAACTGCCGAATCGGAAAAATTGGGTGCTATCATATAGCT11.2345679012345678No Hit
ATGCTCTGATTGTCATTCATTTGCAAAATTTGCATCCAAAGTATACAACA11.2345679012345678No Hit
TAAACACATGACTTAGACAAACAAAAATTCCTGTAACTAAAAAGTTAATC11.2345679012345678No Hit
GGATGGGATTTTTTCAATAAACGGATAAATGGGAAATTCAAAAAAGATGC11.2345679012345678No Hit
ATATATACACGAATGATTTCTGGGTTATAACTTGAACCACCCTTTTTCTG11.2345679012345678No Hit
GTTCAAATTTTATGCATCATTGTGTTATGAGTCTGAATCAAGGTGTATCT11.2345679012345678No Hit
AGAGTACAGTGTGACTCTTCGTGTAAACTGTCCTTTTCTTTCTTTACCTT11.2345679012345678No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)