FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_037.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_037.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAGCAAGTTATAAGAAAAATAGATAGAAAATTAACAATCGCACGTT10.8130081300813009No Hit
AGACTATGCTCCAGAGGAGTAAGCAGCCTACTATGATGAAAGAATAATTG10.8130081300813009No Hit
CTATTGGATGGGTTACTTTTTATTGGCATTGGAAACACATCACATTATGG10.8130081300813009No Hit
AGTTTTTCTCAGGTTAATGCAACTACGTTNCAATTCAATAACTTGACTCA10.8130081300813009No Hit
GTAGGAGAGTTCTCGGTTTTTCAAAATCTCTACACCAGCTTTGCGTTGTT10.8130081300813009No Hit
GGCTACACTACTTAGGCTTTTAAGATCGGGTTGCGGTTTAAGTTCTTATA10.8130081300813009No Hit
GTGGCACTCTAAGTTAGTGTTCGTCTCTCGGATCAAATTTTCGAAGTACT10.8130081300813009No Hit
GGTTACATGCTGGTCAAGAAAGGCTGACGAGCCCGATATGCATGGGAGTG10.8130081300813009No Hit
ATGTAAAACCATGTTTTTTTTTCCTCCTTATTTTTTGTTTTGTTTTCGGA10.8130081300813009No Hit
ATGCCATACAAAGGAAGAGACTCTTATTAGCTTTTGGCCAAAACCATGAA10.8130081300813009No Hit
AATCACACAATCTTTTCACCCGATGCTTTCTATCCAGTAAACTGGATTAA10.8130081300813009No Hit
TATATATATANATATGTATGCCAACGTTGTTGATTTTCTTGTATGGTTGT10.8130081300813009No Hit
TCACAGTGCCATCAAAGCGGACACCCTGGCCAGACTCTTCCTCAGAGCTC10.8130081300813009No Hit
ATCTTCTATGATTATGATTCACATTTGACATTCCTTAACAAAAAAAATCC10.8130081300813009No Hit
GGATATATATATAGAATATAGTAGATTGTTGATATGTTGNACTGGAATTA10.8130081300813009No Hit
TCCCTGATATGTCTGAGTCATGGAAAGAAACATAACTGATATCAAAATAA10.8130081300813009No Hit
GGAGATATAGTCTCCGTTTCTTCTTCTTCTTTGGCTTCTTTTGGAGCTTG10.8130081300813009No Hit
CCAAGAAATATAGGCCTGCCTGCCATCCACACCAGAATAAATGGAGTTTT10.8130081300813009No Hit
ATTATAAGTTGAAGAATCTACGCTTTAATCAAAATCAGACTCCAAATTGA10.8130081300813009No Hit
ACTCTACTTAGGCTTTTAAGATCGGGTTGCGTTTTAAGTTCTAATACTCA10.8130081300813009No Hit
ATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCACTTAACCAAGCCA10.8130081300813009No Hit
AAATAAACTGGCGTGATGCATGCTTGACACAGCGTAGTCTCTTCGTAATC10.8130081300813009No Hit
CTTCAAAGCCTTCTATCCAACTTCTGTTCTTGAAACTGGACATGGTATCC10.8130081300813009No Hit
GTCCTATTGAAACCAAGAAATATATGCATTCCTTCCATCCACACCAGAAT10.8130081300813009No Hit
GACAAAGACATGGTTCGGTCTAAGCGGCAGGATCACAATTGGTAATTAAA10.8130081300813009No Hit
CCTAACTAACATCGCAACTGCATGAGTCAAATTATGGTCTTAATCTACGG10.8130081300813009No Hit
ATATTAACTCAACAAGTAGATGTAGGTAGCTTAGAGAAACGTATATAAAT10.8130081300813009No Hit
GGATGTGCCATATATGTCAGGTAATCACAAGATTCAATACCATTTGACAA10.8130081300813009No Hit
GGTTTTTGTTGTAAGATATCTAATGAAACCGTCGCTGGAATTGATATCTC10.8130081300813009No Hit
ACCAGATACATATCTTATCAGTATCTAGAGAAAAATAAAAACTTATGACT10.8130081300813009No Hit
CTTCCCCCATAGATCCATCGTCACCCTGATAATCATCATACCCATCACCA10.8130081300813009No Hit
CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCT10.8130081300813009No Hit
ATATTTAACAGTCTGCTAACTTCACTATGGTACTAAGAAATTGTTTGATA10.8130081300813009No Hit
AATCTAGACAATAGATAGATATGCCCGCCATAGGTATCTGTAGTTGGATC10.8130081300813009No Hit
GTTTCATCCCCAAAAACAGAGCACCAGTTCAGTATACTCTTCTAAAAGCA10.8130081300813009No Hit
GTCTGATCGAGTGAAGAAACCAAAGACCACCTCTTCGTAGACACCGATGC10.8130081300813009No Hit
CCTATCAATTATTCAAGTTAATATTGCCTAATACCTTTCTTCGATTTGGA10.8130081300813009No Hit
GAGGCTAATATCTTGCAGACAATCCGTTCATGGCATATGATCCAAAGGGG10.8130081300813009No Hit
CTATACACCCACGCCTTCATCTCTTTCGGAATCGAAGCATCCGCCGTGAT10.8130081300813009No Hit
CAAGAGTACTTTGACCCCCCAAAAAAAAAAAAAAAAAACTCATCAAGAGT10.8130081300813009No Hit
GACTTGATTAATTGTTCTTTGTTGCTCAAAAAGAATGGTTTCATTTTTGT10.8130081300813009No Hit
AATTAAAAAAATCTGTCAAAAGTCAAGCTTACCTTCTATAGGGACGCTGT10.8130081300813009No Hit
CACTCAAAGGAAACTAAATAAGTAAAAATTGTTTTCAGTTTACCATAATA10.8130081300813009No Hit
TCTTTCACCTTTCTTAATTCCCAATTGTTTTATTTTTCTGGGTTAAATCC10.8130081300813009No Hit
CACCTCGCTCACACTCGGGACAGCATAGGCGGATCCATGCTTTCCAACGA10.8130081300813009No Hit
AATCTGCAGAGTATGTAAGCAGTAATGAATACGAACAGCTTTGTTTTTCG10.8130081300813009No Hit
TGGCTACACCATGAAATCTTTGAGAGGCAACAAGAAGGTTGCTAAGTGTT10.8130081300813009No Hit
CCTTATCTCATCTCCATGTACCAGCTTGATAGTCCTAGTAACCGTTGCCC10.8130081300813009No Hit
GTTTTAAGATTATAATTTTTGGTTTTTGAATTTTAGATTTTGGGTTTTAG10.8130081300813009No Hit
AAAACATCAAAAAACAATAGTTAAACCAATCAAAAATAGAAAACGCAATT10.8130081300813009No Hit
TATATTTATCACATAATTAAGATATTTCGTATATGATAAAAAAATATTTG10.8130081300813009No Hit
AAATAAAACGAACCAAAGAAAATATGAACTGATTCGAGTCAGTCTACACT10.8130081300813009No Hit
ATTTTATCTCATTTGGTACAACTTGATCGGCTCTGTCGAAATGTGACAAC10.8130081300813009No Hit
GCTTTAAGAGTTCAAATTAAACAAATACAGAGAATGAAACAAGATTATCC10.8130081300813009No Hit
TCTCCACGTAAAGCTTTAGATTGATCATCTACATCTTTTTCTCTTACCGC10.8130081300813009No Hit
GTATAAATGTCTTTGTGAACATAAAATCTTTCAGCACCTGCANAGTTTTG10.8130081300813009No Hit
GCTTAGATCTTTGCTTGTCCTCAAGGAAAATAAAAATATTTATCAGGAGA10.8130081300813009No Hit
GATTTAATTTCATAAAATTAAACATAAATATATTTGATCCACTAGTCACG10.8130081300813009No Hit
TCATAATATTTGCTTATTTTTGTATCTTTTGCTGCTTTTAATTATTGGGT10.8130081300813009No Hit
ACATAAAACCAGAAATAGTTTATTTATAATAAAATTAGACAATTTTCAAN10.8130081300813009No Hit
CTGCCTGGGGGTCACAATTCGTCGTCCCTCACCATCCTTTGCTGATGCGG10.8130081300813009No Hit
GTTTCTACACTAACAAAGCAACAGCTCCTTAACGAATTCCCAACGTTACA10.8130081300813009No Hit
GGTCTTTACTCCGAGCAACCCTGCGCACATAAATCTCTCAAAATTATCAT10.8130081300813009No Hit
CTAATAAAGGTTAATAATTATAGAAGAACGTTTACAACACGAACGTTACA10.8130081300813009No Hit
ATCATAGTCTCCATAAGTTATCCAAATTTGAGAAATGCTCATCTTCATTT10.8130081300813009No Hit
GCTATTTCTATAAATAAAAAACAAAAAAAGTTTATAACGTTAAATAACTT10.8130081300813009No Hit
TTCTTTATGAGTACAAGATCGTCGGTTTCGAGTAAAGTCGAATATGATAA10.8130081300813009No Hit
GTGCTTGCCGTTGTTATTATGGGTTTTCACTTGAAAAATTAAATGCTTCT10.8130081300813009No Hit
GAGTTATTCTTTAGTTTGGAGTGCAGATTCAGAGAAAAATGGTGGTGGTT10.8130081300813009No Hit
TTCTTACGCCTTTAAGATCCGGTTGCGGTTTAAGTTCTTATACTCAATCA10.8130081300813009No Hit
CTTTTCGTCCAATGTATTCTGCAATCTGACCACTGGCAATTGCACCAACC10.8130081300813009No Hit
AGATCATTCAGCATCAACCATTAATAAAAAAAAGCTTCTAACTTTAGAAA10.8130081300813009No Hit
TCTGATCTATCATCCCCAATGCATACCACAAAATCTGGCGCTATCCCATC10.8130081300813009No Hit
TGTCTCGTCACATTTTCAGGGTCAAACGGAGTATTTTTCTCGTTTTTAGT10.8130081300813009No Hit
CTATTATGTACTATACTTTTGCACAAAAATTAAAGTATAGTACTATACTC10.8130081300813009No Hit
CTTAAAAATAATTGTAGTGGTCAATCATATCTAAAATTAATCTCAGTGAA10.8130081300813009No Hit
CTCCATAGCTGACGAAGCGCACGTAGTGCAGCTGATTCAAACCTAGGGTC10.8130081300813009No Hit
AGATTTCTGCATNTCCGCACAAATCGGTTGAGAATATCAGAATCTGATGA10.8130081300813009No Hit
TCTTTCTTCTCCTGCTGCAGATTTTGCCCTGCGCGGATTCTGGAGCTTCT10.8130081300813009No Hit
GTTTTCGCCTTTTATCCCCAAGAATTGTAGAAACGATGCATGCAGGAATC10.8130081300813009No Hit
GTCCTTAGCTCCTCCAAAAACCTCTAAGTATTTCACTGATACTTCAAGAA10.8130081300813009No Hit
TCTCATAGCAAAATAAAACATAAATATAGTGATGTGAAAAGACTTAAATG10.8130081300813009No Hit
TCAAAATCCAGAGGAACTTTTAGCACTATAAAAACGATTTAACCGTTCAA10.8130081300813009No Hit
CAAACAGAGAGGACAAACTCCAACATAATCTTCTTTTTGATGGAAATAAC10.8130081300813009No Hit
TTCATTGAGTTTTCAATATTTCAGAGATTTATTCAGTTTTCAATAGAGTG10.8130081300813009No Hit
GATATGCTGCAGAAAGTAGAGAGAATTATCGACGAAATTGGAGGTAACTG10.8130081300813009No Hit
AGCATATATCTTCTTTATATATATATGTGTATATTCGCTTGGCTTTCCGA10.8130081300813009No Hit
ATTCTCGGTTAAGACCCAATGTACAAGACAACCGGTTTCGTGTGTTCTTT10.8130081300813009No Hit
CCTTGAACGTCATCAGGAAGGAGCAGCCATGAAATTCGATCCGTCGATTG10.8130081300813009No Hit
GTACTCTTAGGAGCCACTTTAGCTCTTGCTCAAAAAGACATTAAGCGGGG10.8130081300813009No Hit
GCATTAAGAAAAGGTTTCCATACTTGCGGTACTCTGATTGTGGAACCAGT10.8130081300813009No Hit
TGACTATATCTTATTTTGCAGGATCCCAACATGATTCAGATGAAAGAGAA10.8130081300813009No Hit
CTATAGACAATTCGGTTGAGAGGTACACACAAGAAATAACCACAATAGTT10.8130081300813009No Hit
CCTTTGAACATTCTTTATCAAAGAAAGCAATCTTCTCCCTCTTAGCTAGA10.8130081300813009No Hit
GAGATCGAGACTACAATAAAACAAGGAATCTTCTGATGCAAAACACCAGA10.8130081300813009No Hit
TCTCACATCATATGTTTCTCGTTTCTTATTCAGGGACAAGTCTGAGAGGG10.8130081300813009No Hit
ATAATTTACTTTAACTTCTCTATACTACACAAGATGAGATATCCATGGAG10.8130081300813009No Hit
TCATATCACTCATTACTCAAGAATTATCTCTCCAAAACTCTATAGGTTCT10.8130081300813009No Hit
GTGTGAAAGTCATTCCAATTCCTGGGGACAGAGAAGTGTGTGGATATGCA10.8130081300813009No Hit
CTATCATGTTCGGTAAAATCTCAACTATATTAAGAAACAAATTTAAATCA10.8130081300813009No Hit
ATATCATTCATACATACTTAGGAAAACAAACAATTTTCTTACAAACTCTT10.8130081300813009No Hit
GGTTTTAGCTATTCGAAATCCTTCAGTTATGTAAAACCCATGATAAACAT10.8130081300813009No Hit
ATTTACTGCTGTACGTTTCTGCAAACCTATGACCAGCTTGTAAGACTCTC10.8130081300813009No Hit
GGTGTTTATACAACTCTACCACCCAGTCAATTCCGTTCCACTTAATCCCT10.8130081300813009No Hit
AAATTCTATTTTAGGAAGAAAATATTTGATTGTGCCCTATATTTTGGACA10.8130081300813009No Hit
ATGCTTGGCTGTTTCTCCTATTCCTGAGGAGTGGAGAACTCCCTTGGCGA10.8130081300813009No Hit
CAATTATATGGATGCTTTCCACCAGATCTCCAAGCTCACTGGCAAAAAAC10.8130081300813009No Hit
CTGAAGGAATGGCCCAAGAAATTCATATCAGGAGCATCGAATGCATCAGA10.8130081300813009No Hit
GTTATGGCTTGGTCGGTTTGGAGCAAGTAAGAGTTCAAAATTATAATTCA10.8130081300813009No Hit
AGTTTAAACAATTTGATTAGTTGAATACAGTGTGAAGAAAGAAAAAGGCA10.8130081300813009No Hit
AGGAACGACAGAGGGTGCGCCACACTAATCCCTGTCTTGAGAAAACCAAC10.8130081300813009No Hit
CATCTCCCAAGTCCATTGAGAAAGCCAGACATGAAGTGTCCAGATGTTTC10.8130081300813009No Hit
TCACCAACTAGCTAATCAGACGCGAGCCCCTCATCGGGCGGATTCCTCCT10.8130081300813009No Hit
CAAATATGCTTACCCAAGGATGTTGTTTCGGACGGATGATCAACCGAGCG10.8130081300813009No Hit
GATATAGATACCTCATAAACAGGTAGACTGCTAACCGGATTCTCTATCTT10.8130081300813009No Hit
GAAGAAAAATGGGTGTGGGGACGAGATAGCGCGTGGGTTCCAGTTGTTGG10.8130081300813009No Hit
AACGTAAATATGTATTAGGTAATTAAGGTCTACTAACGATGGATGGTATT10.8130081300813009No Hit
AAATGTGGGTATTCGGGTCGGGCTCGGAGAGGATTTTTCGGGTTCGGGTT10.8130081300813009No Hit
GTGTATGACTTAGATGATTATATACATTGACAAAAGAAAAGTACGTCAAA10.8130081300813009No Hit
GTCTATGGAGATGTATGTGTATTTATGTTAGTATATATGTATATAGCTAT10.8130081300813009No Hit
AAAATATAAAACAATACACCAATAATATAACCAAACAAAAGCCCACAAAA10.8130081300813009No Hit
TTGTTGGGCCTTGATTGTTTGGGCCTTTCAAATATTATATTTCTAATTTT10.8130081300813009No Hit
GTCACACTATGGGAGCTGGCCATGCCCGAAGTCGTTACCTTAACCGCAAG10.8130081300813009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)