FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_029.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_029.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGAATCGTGAGCAGATGTAAGAAATGTTGGCTTCACCTTTAACCTGAA10.8547008547008548No Hit
GTCTCAAATAATAGAGTAGATAAATAAATAATACTGAAACAAATATCATT10.8547008547008548No Hit
AAACAATTGTTACATATGAATTATCTACAAAATTCCGGAGGATCTTCAAG10.8547008547008548No Hit
ATCACTTGTANACCTTGACAATGGCATCATCATCCTTGATAGTTGTTGTT10.8547008547008548No Hit
CTCTCGGTAGAATCGATGACTGCATCAAAGATGCACTTGGTAGTACCTCT10.8547008547008548No Hit
GTACAAATAGTTGGATTGGTCAAAAGTTCACACCTGATAAAAATCAACAG10.8547008547008548No Hit
GTTATGAAGTTTCAATTATTCTTGCTGGAGATAAATTTTATTTACTAGGC10.8547008547008548No Hit
CATATTACACAAATCTGCGATTGTCTGTGACATTTGTGCAATCCTTTCCG10.8547008547008548No Hit
GCTATTAATGTAGGGATTTCTGTCTCGAGAGTAGGATCCGCCGCTCAAAT10.8547008547008548No Hit
GCATTTTTCAATTAAACATACAATATATTTGCATTTTTAAAGATATTTCT10.8547008547008548No Hit
TATGTAGTGGGGTGTACAAATAATTATATCCAAAAATAATAAAAAATAAA10.8547008547008548No Hit
AGATTGGTCTATCCCCCGCTCAAGAAGAGTAAGATTTCCCGCCTCTAAAT10.8547008547008548No Hit
GATTCAAAAAGAGAAAATATTCGGTATAGTTGACCGGGAAATATTGTAAT10.8547008547008548No Hit
TTCTTAGCATGGACAACTTAGAATTGTCATTTAACTGAGCCAGCAATGGC10.8547008547008548No Hit
GAGTCTATACCGCAACCAACTAAATCACCTGTTGTATAGGTGTCACTGGC10.8547008547008548No Hit
ACACAAAGCATCTAGTCATATTTGACTACAAATCCGCTACCCAAGCTTAT10.8547008547008548No Hit
ATTGAATATTGCAGATTAAGAGACCACAAGCAAAGGAATATTTCGCAGAA10.8547008547008548No Hit
CCGTAATCCGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGC10.8547008547008548No Hit
TTGTACACACCGCCCGTCGCTCCTACCGATTGAATGATCCGGTGAAGTGT10.8547008547008548No Hit
CATCTGGATGCTCCAACTCAAGCTGCCAAAACCAGAAAATTGCAGTGTAA10.8547008547008548No Hit
AGCTAACTATTTATCTCCTCAGCTTCGGGATATGTTTGCTTGGTGCTAAT10.8547008547008548No Hit
TCCTACACGTGGACGAAGGATCAACCCGCAGGAAACGAGCAAGAATATTG10.8547008547008548No Hit
CTTATAAGTACTCAAATGCATTGGATAGTGACAGATTTTGACCATAAAAA10.8547008547008548No Hit
GTATATTTATATGACTCTTTTTCTCTGGTTGTTTGTTGGATTTTACCAAT10.8547008547008548No Hit
AGAATGAGTATGGCGACGTTTTTAAGTTCAACTAGCAAAACAAATGAGAT10.8547008547008548No Hit
ATCTAAAAACTCACCAACAGGAAAATAGCGGCTCTTTATAAGTCTTGCAA10.8547008547008548No Hit
CCTCTTAAAATATTAATCTCAATTATAAATTTACAGTAATTTCAGTTATA10.8547008547008548No Hit
TGTCCAAGCCTTCATCCAACTACTTCTACCCAAGTAAAAACCGCACCTTG10.8547008547008548No Hit
GTCCCGTGCCTAGTATTTTGCTTAAAGGAAACGTATGCGCCTGTCTCTTA10.8547008547008548No Hit
CTTTTCATCACATGAGTGTATCTCTTTGGCTGCTAAGTTATATCATTCAA10.8547008547008548No Hit
ACATTAGACTCTCCAATATAGTCTCTAGAATAGGTTAAGATAGGTCCTCA10.8547008547008548No Hit
GAATTACTCTTTGTTCCTTAATAACAGGATGACCAGCTCCAAATAGCAAC10.8547008547008548No Hit
CATCTTATACAGTCGAAAAATAACACAAACAAGAAAACATTTCCTTAGAC10.8547008547008548No Hit
AACTAGAACAAATGAATGGAAAGTAAAGAAAAATAGATAAAATGATGAAA10.8547008547008548No Hit
AAAGTGTGCTGAGAAGAGATGCTTCCTTAAATCCGTGATGAGGGCATTTG10.8547008547008548No Hit
CTCGTACTAGGTTGAATTACTATCGCGACGCGGGCATCAGTAGGGTAAAA10.8547008547008548No Hit
AAGTACAGGAAGGATAATGACTCGAGCTTTTCCGAATGAAAGGCGATAGG10.8547008547008548No Hit
CAATATAATATATGCTTTCACTAAATAGTAGAATTCTAGCTTTAGATATA10.8547008547008548No Hit
GATGTGTTGACAATGTTTCAGCAAGTTGATCGGAGCAAGAGACTACACAA10.8547008547008548No Hit
ATTACAAAAAAAAAAATTAAAACTTTAAAAAAAAAAGATATATAAAAAAA10.8547008547008548No Hit
AAAAAATGCAGAGAATTGTACCAGCAAGCGAAAATATAGGCTCAACATCA10.8547008547008548No Hit
GGAACCAAATCAAAACAAAATATTTCTAACCGGTTAAGTAAATTTTTGTT10.8547008547008548No Hit
ATCCACATCTATGAATTGAAAGGTCCGAACGATCAACTCTGCAATCAGTT10.8547008547008548No Hit
ATAGGTGGTAGGTAGTTCGATGCGCGAGCATGGAGCCTACGAACACTAGC10.8547008547008548No Hit
GAGGTACCACATAGGAGCTTATGGACAAGACTTGATGCAGCCGAATTAAT10.8547008547008548No Hit
GTGTAATAATTGGTTGTCATACATATAGATATTTAGCTAGATCTCCTAAT10.8547008547008548No Hit
GCTTTAACAACCTCCTGTCCAACAATACCGCCAAACATTGCAGCCATAGG10.8547008547008548No Hit
CAATGATAAAGTAGAACCATAAATATGTTGCATTTAGCTTTTTGGAAACA10.8547008547008548No Hit
TAATATAAAGGAAGAAATCCAAGAAAGAAAATGTACTTATAGGCCAAGTA10.8547008547008548No Hit
ATATGAGTGTAAATATTAAAGGACCACTTCATCATCTAAACCCTCTACCC10.8547008547008548No Hit
AATTAAATATTAACAAATGTAATGTCAAACAAAACTCAAAAAGACTCAAA10.8547008547008548No Hit
ATATCTTTCTGGTCTGTTCACTCACATCTTGTGCAGGTAAAAGCTCATGA10.8547008547008548No Hit
CTTTGGCTACACCATGAAAGCTTTGAGAAGCAAAAAGATGGTTGGTTTGT10.8547008547008548No Hit
GTCCGTGGGAACCCCCTTTTTCGGTTGGGAATTGGGTAGAGGTCGAGGGA10.8547008547008548No Hit
TTTGGAAATAGGATGAGCCATGGAGTTGTTGGATTTGTTACTCCAATGAC10.8547008547008548No Hit
GCTCAGCTCAGAGACATCTCAACACAAGGTAATGGGCAAAGGAATTCAGC10.8547008547008548No Hit
ATCAGGCCCCTGACTGATTCTACCATAGAGGCCAACGATAGACAAGAACT10.8547008547008548No Hit
GACTACACAAGTCCAACAGAAACTGCTGTCTTCAATATTGCTTCTATTTA10.8547008547008548No Hit
CTTACCTTCCTCAGTTCCTGAATATTTGATTTTTACCCGAAAGTTTTCTG10.8547008547008548No Hit
CAGAATCAAAAGAAGCAGTAACAGACCAACAACACATCCGATCACAATCC10.8547008547008548No Hit
ATACATTAATAGTTTACTTGTAAGAGTGGAAACTTAACCTGCGAAAAACA10.8547008547008548No Hit
TTTCTTTTGCTTTATGAAAAAAGAAAAATCAAATAAAAAGATAAATTAAA10.8547008547008548No Hit
TCAAAAGTGTGACTTTAATTTCAATAATAAACGACCATGTACCGTATCAA10.8547008547008548No Hit
ATATTTGAATATGAATGGGTATCTNGCACCTATATATGGTGATGAAAGAC10.8547008547008548No Hit
ATCTAGCACAATCTAATGGGTGCTACAATGAAGACTATGATCGCACAATG10.8547008547008548No Hit
GGTTTACACGGTTAACCATTCATGGGGTAACCCCTTTCGAAATCTGAAGA10.8547008547008548No Hit
AGATATATGAGTCAAATTACATGCAAATAATGTATTAACTGAATATCGAA10.8547008547008548No Hit
GTCATAATGTCACATGTTATTTGTAATAAAAATGATATATAGAAAAAGAG10.8547008547008548No Hit
GCTTTAGGAGAACCAAAGTCCGTTACATTATCCAGCTCTGCGTTTGTTTT10.8547008547008548No Hit
GAGTCCATTAAAACCATTTAATACACTTTCATATTTTTGGTTCTCTTGAT10.8547008547008548No Hit
GGTCGGCGGTGCACCCGCGAGGGATCCCGCCAATCAGCTTCCTTGCGCCT10.8547008547008548No Hit
CTCTACAACCATCTCCATGACGTAACCATACATAGTAGTTAGTCATAAGT10.8547008547008548No Hit
CTAACGGATGCGATCATACCAGCACTAAACCACCGGATCCCATCAGAACT10.8547008547008548No Hit
ATCTCTAATTTTGTAATTTTCTGTTTGAATAAAGTTATATATATTAAGTC10.8547008547008548No Hit
GTTTGTGAGTGTACACATTATTTAGAAGGAGATGTCAAAGATGAATAGAA10.8547008547008548No Hit
CTAAAAAAAAAGATAAAACAAAAAAAATAAAACGATTAAAAACCAATATA10.8547008547008548No Hit
CCACATAAGATAGTTTTCCATCAACCAATTCAAATTCTCTACTTATCTCC10.8547008547008548No Hit
CTCTATTATAAGAATGATTCATTTTGTATTCAAACCCAAAGTTAACATGG10.8547008547008548No Hit
CACCACCACCCTCCTCGTTTCCTCAGAGATCCCCTCTCTAACTTCTAAGG10.8547008547008548No Hit
GAAGACGATCAGCTTCTCAGCCATAATCCTCGTATTCTTATTGGTTTCCA10.8547008547008548No Hit
GTTCTTACGCCTATAATGAAAGAACAAAGTCAAATTTTGGAGAGAACCAA10.8547008547008548No Hit
GTTTACTTTTATTTTTGTTCTTGGCAGCTTTTGTCTTTTTCTCTTCCCCT10.8547008547008548No Hit
ATCATATTTATATATGCCAACTAAAAACAACTTACCCAAAAGTTCCCATT10.8547008547008548No Hit
AACAATTAGTTTTCAATTCAATTTCGGTGATAGTTTTAGCCATTTCTGTC10.8547008547008548No Hit
CGTTTAAGACATCGAGTGTAGCTTCCGATGAATCAAACACTAGCGCAACG10.8547008547008548No Hit
ATCCAAAGAAGGTTTTCCTGTACGTTCATCACAAAAAATTTCTAGATCCC10.8547008547008548No Hit
ATATTACGGACCCAAAATTACTTGTTCAAGCATTGTTTTCGAATTTTTTC10.8547008547008548No Hit
GTGATACTCTAAGCAGTCCATTAATTATGTATCAACGCTCAAACAAAAAT10.8547008547008548No Hit
CGCCTGGAGCGTACCGACATGCGGTGGTGAACTTGATCCATTACATTTTA10.8547008547008548No Hit
GTAGACAATAATTGTTTCAACCAATTCAGCTCAAAGGGGAGGACGGACAT10.8547008547008548No Hit
TTTGAAGACAAATCCGCTAAACAAGCGTATTCTTGATTCTCAAAGCTTTG10.8547008547008548No Hit
CTTTAACCATTATTGTAGCTCACCATATGTATTCCATGCCCCCTTATCCA10.8547008547008548No Hit
CCTCCTTTCTTGTCTCCACCGTCATTAACAAACCTCCATACTAGCTGCAC10.8547008547008548No Hit
CTTTTAAATTGATATAATTATAAATGTGAAGAAATATTTTTATATCATAA10.8547008547008548No Hit
AATTATTTATATATCTAACTTAAAAAAATCAAATAAAAAATACCATTATA10.8547008547008548No Hit
GAGTCTTTGTGTCTTAATCCTAACCTTAACCGTTTAAATTCTTGTGTTTT10.8547008547008548No Hit
GGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGTA10.8547008547008548No Hit
GTCAAAGAGTTTTTTTCTTTTTTCTTTTTTCGTGTCAAGTCAATTCTCCC10.8547008547008548No Hit
GGTTTAAAAAACCCACGGTAGTATGAAGTGCTACTCGAAATCTTTGCCAC10.8547008547008548No Hit
GAACTAAACTGAATCTAAACAAAAATTATATATACCCAAATAGATCTTAA10.8547008547008548No Hit
GAATAGCGGAGCAAGTATTAGTAGCATAGCAAAAATGCGTTCCTCATCAT10.8547008547008548No Hit
CCAATATATAGTGTGAAAGACTAATGGCTTGCTTTGATATTTTTTCCGCG10.8547008547008548No Hit
CTCATTTGTTATCATTGGGGGTTTTCTAAAAAATGGAGTTGATTGGATAT10.8547008547008548No Hit
ATAATCAATAATAAACATTAAAACAATTAATATTAAAATAAAAAACAATA10.8547008547008548No Hit
GATATTCATGGGCCCAACTTTCTACCAGCGACTTGTCCACATGTCAGAGG10.8547008547008548No Hit
GCTTTATAGCATGGTCAAAGGTAGGAAGCTTGAATAAAAAAAAAATGTTG10.8547008547008548No Hit
CAACAGCCACGAGGTTATTTTGGTCCCCAAAGAAAAAATGAGTATCCGTC10.8547008547008548No Hit
CCCACTATGCATGTGACATCTCTGCAAATATTTCACATGCACATATCTAT10.8547008547008548No Hit
CCTAAATTGGGATCTATACCTTCTGTTTGAACCATGTTCCCTGGAGAAAA10.8547008547008548No Hit
ATATATAACATTAAAAACAAATTCTTGAGTTTCTTATGTGAAAATATTCA10.8547008547008548No Hit
GTATCTGAGCCTCTGAGGTCACTTTTTGGTTAGGTTTGATTATGTATTTT10.8547008547008548No Hit
ATATAAGATCCATCCGTATAGATATCATCATCTACATCCAGAAAGCCGTA10.8547008547008548No Hit
ATATGACACATATATTTATCACCAAAATAAAATGTCATGCATAAAGTAAG10.8547008547008548No Hit
AACTTAAACCGCAACCCGATCTTATAAGCCTAAGTAGTCTTTCCTGGTTA10.8547008547008548No Hit
GTGACAATGAAACAGAGCTTTTTCGCTGAGCTTCAAGACCGAGAAGAAGA10.8547008547008548No Hit
GACCCAAGCTAGGCTGAAGGCAGGACTCTATTAAGTACGGCTAAATGCAG10.8547008547008548No Hit
CTGCAAGTGATACCTCTTTACTCCCATTGAAAATGATATTCTTAACAAAA10.8547008547008548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)