FastQCFastQC Report
Tue 23 Aug 2022
HNCMMDSX3_n01_chi_028.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHNCMMDSX3_n01_chi_028.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length151
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGCTATATGAATCGAGACCACTAAGGCCCACAACCACTGGAATTACAT16.25No Hit
CCATATGAGTCTTTGGCTTTGTGTCTTCTAACAAGGAAAGACTACTTAGG16.25No Hit
TTCCTGGGGCCTTTATCCAGCCGCCAAAACCGATGCTGGCCTGAGCACGG16.25No Hit
TCAAAAGAAACATATCTACATTGCATACCAAAAGAAAGCTTTGATAAGAA16.25No Hit
AGTTCTTCTTCCAAGTGCAGGATAACCCCAGGGGGTTACGGGTTTTTTTC16.25No Hit
GTGTATGTGTATGTTTATGTTTAGTGTTTGTGTTCGTGAATTGCGTTTAT16.25No Hit
ATATAAGGGTAAGTAAGGAGCTGAAAACGAGTCCTTCGGAGGGCGGAGAA16.25No Hit
CTCTATATTAACTCCACCATTATTTCAAACGAAATCATTCCTAAAATTTC16.25No Hit
ATACCAAATCGGTAAAGCCAAAGAATCTCCAGTTTAATTATGAATTTAAG16.25No Hit
ATAATAAACAAAACAAAAATTAAAAATAAAATGCAAATAAATTATAATTC16.25No Hit
AAGTTAGGGTGGCCTATGAAAGCCAATGCTGATTTCTTTTGTAAGACATC16.25No Hit
AATCCAGTCTTTATAATATAAATACGAAATTGAGATTTCTCGTTGAGCTA16.25No Hit
CTGTTGTGACATTGGAACTAACATACCTGCCACCTGGATCTTTAGGAAAA16.25No Hit
ATTCAATATACAATTTTCATTTTTTCGATTGATAATGTCAATTTAAAATT16.25No Hit
GAACATATCTCTATAATCTTCCAAAGAGTTAAATCAACCTCAAGGAAATA16.25No Hit
AAATATGACTTGATGTCATGTGTATGATTGAGTATAAGAACTTAAACCGC16.25No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)